Miyakogusa Predicted Gene

chr1.CM0133.1540.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0133.1540.nc - phase: 0 
         (412 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CU013524_29.4 Metallophosphoesterase; Lariat debranching en...   628   e-180

>IMGA|CU013524_29.4 Metallophosphoesterase; Lariat debranching
           enzyme, C-terminal chr03_pseudomolecule_IMGAG_V2
           19828765-19824881 E EGN_Mt071002 20080227
          Length = 412

 Score =  628 bits (1620), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 300/390 (76%), Positives = 335/390 (85%), Gaps = 2/390 (0%)

Query: 1   MKIAVEGCMHGDLDKVYKTLQHMEKTQNTKIDLLLCCGDFQAVRNENDLKSLNVLPKYRE 60
           MKIA+EGCMHGDLD VYKTLQH+EKT NTKIDLLLCCGDFQAVRN+NDLKSLNV  K+  
Sbjct: 1   MKIAIEGCMHGDLDNVYKTLQHLEKTNNTKIDLLLCCGDFQAVRNKNDLKSLNVPDKFLS 60

Query: 61  MKSFWKYYSGLEVAPYPTIFIGGNHEASNYLWELYYGGWVAPNIYYLGAAGVVRFGNIRI 120
           M SFWKYYSGLEVAPYPTIFIGGNHEASNYLWELYYGGW APNI++LGAAGVV+FGNIRI
Sbjct: 61  MNSFWKYYSGLEVAPYPTIFIGGNHEASNYLWELYYGGWAAPNIFFLGAAGVVKFGNIRI 120

Query: 121 GGLSGIFNGRHYNLGHFERPPYDQSTIRSVYHVREYDVQKLNQVQEPIDIFLSHDWPVRI 180
           GGLSGI+    Y LGHFERPPY+ +TI+SVYHVREYDV+KL QV+EPIDIFLSHDWPVRI
Sbjct: 121 GGLSGIYKHHDYKLGHFERPPYNHNTIKSVYHVREYDVRKLIQVKEPIDIFLSHDWPVRI 180

Query: 181 TDYGDWEELVRKKSDFKQEIEEKRLGSKPAALLLERLKPHYWFSAHLHCKFSALVQHGEG 240
           TD+GDWE+LVR+K  F+QEIEEKRLGSK AA LLE+LKP YWFSAHLHC+F+ALVQHGEG
Sbjct: 181 TDHGDWEQLVRRKPYFQQEIEEKRLGSKAAAQLLEKLKPQYWFSAHLHCRFAALVQHGEG 240

Query: 241 GPLTKFLALDKCIPGRDFLQIVEIESEPGPYEILYDEEWLAITRRFNSIFPLTTKGADFR 300
           GP+TKFLALDKC+PGRDFLQ+VEIESEPGPYEI YDEEWLAITR  N +FPLT K ADFR
Sbjct: 241 GPVTKFLALDKCLPGRDFLQVVEIESEPGPYEIQYDEEWLAITRNLNYVFPLTPKAADFR 300

Query: 301 AVNLEMEDCREWVRSRLRERGCKPFEFVKTAPCYDDPSQSSSDGAFTASPRNPQTESXXX 360
            VN EMEDCR+WV+S+L+ERGCKP EFV+T PCY DPSQ+  +G  + +PRNPQTE    
Sbjct: 301 GVNFEMEDCRKWVKSKLQERGCKPPEFVRTVPCY-DPSQADVNGDSSVNPRNPQTEYLLR 359

Query: 361 XXXXXXXXDRNPEEKNLSPYPSPSIQRGPV 390
                   DRN E K++SPY S  I RGP 
Sbjct: 360 LLELPYLLDRNSEGKDVSPY-SSLIPRGPA 388