Miyakogusa Predicted Gene

chr1.CM0113.710.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0113.710.nd - phase: 0 /partial
         (277 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20760.1 | Symbols:  | calcium-binding EF hand family protein...   308   2e-84
AT1G21630.1 | Symbols:  | calcium-binding EF hand family protein...   185   2e-47

>AT1G20760.1 | Symbols:  | calcium-binding EF hand family protein |
           chr1:7209505-7214763 FORWARD
          Length = 1019

 Score =  308 bits (790), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 169/271 (62%), Positives = 191/271 (70%), Gaps = 19/271 (7%)

Query: 1   VLYKSRCDNRLNEITERASADKREAETLGKKYEEKYKQVAEIASKLTVEEAKFRDIQERK 60
           VLYKSRCDNRLNEI+ERASADKREAETL KKYEEKYKQVAEI SKLT+EEA+FR+I+ RK
Sbjct: 566 VLYKSRCDNRLNEISERASADKREAETLAKKYEEKYKQVAEIGSKLTIEEARFREIEGRK 625

Query: 61  GELQQAIVKMEQGGSADGILQVRAERIQSDLEELLKALAERCKKHGIDVKSIAMIQLPAG 120
            EL QAIV MEQGGSADG+LQVRA+RIQSDLEEL+KAL ERCKKHG++V S A++ LPAG
Sbjct: 626 MELSQAIVNMEQGGSADGLLQVRADRIQSDLEELMKALTERCKKHGLEVNSKALVDLPAG 685

Query: 121 WQPGISEDAALWDEDWDKFEDEGFANDLTFDSKDASSKTKPALVQGEQNFSDDNS-VQGS 179
           WQPGI E AALWDE+WDKFEDEGF N++TFD     SK + +  + E    DD S    S
Sbjct: 686 WQPGIQEGAALWDEEWDKFEDEGFGNEITFD----KSKEQNSSGEKENGTVDDGSGPPDS 741

Query: 180 PVTANGKQGNFA-NGDYTVGDESSYAHSEDDMARSPHDSPAGRTTVESPSHDFSNAFEKG 238
           P       G F+   D     E    HSED   RSP DSP  R   E PS D+S    K 
Sbjct: 742 PTHVEDNYGPFSETSDRHHESEYGTTHSED---RSPRDSPVSRNATEVPSPDYSQG--KN 796

Query: 239 SEADAETHRSFDESTWG-AFDNNDDVDSIWG 268
           SE        FD+S W  AFD NDDVDS+WG
Sbjct: 797 SEF-------FDDSNWASAFDTNDDVDSVWG 820


>AT1G21630.1 | Symbols:  | calcium-binding EF hand family protein |
           chr1:7581446-7587785 FORWARD
          Length = 1218

 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/162 (60%), Positives = 118/162 (72%), Gaps = 2/162 (1%)

Query: 1   VLYKSRCDNRLNEITERASADKREAETLGKKYEEKYKQVAEIASKLTVEEAKFRDIQERK 60
           VLYKSRCDNR NEI ER   DKRE E+L KKYEEKYK+   + SKLT+EEA FRDIQE+K
Sbjct: 633 VLYKSRCDNRYNEIAERVLGDKRELESLAKKYEEKYKKSGNVGSKLTIEEATFRDIQEKK 692

Query: 61  GELQQAIVKMEQGGSADGILQVRAERIQSDLEELLKALAERCKKHGIDVKSIAMIQLPAG 120
            EL QAIVK E+G   D I++ R E IQS LEEL+K L ERCK++G+  K  ++++LP G
Sbjct: 693 MELYQAIVKFEEGKLDDSIVKERTEHIQSGLEELIKNLNERCKQYGVRGKPTSLVELPFG 752

Query: 121 WQPGISEDAALWDEDWDKFEDEG--FANDLTFDSKDASSKTK 160
           WQPGI E AA WDEDWDK EDEG  F  +LT D ++  +  K
Sbjct: 753 WQPGIQEGAADWDEDWDKLEDEGFTFVKELTLDIQNVIAPPK 794