Miyakogusa Predicted Gene

chr1.CM0113.140.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0113.140.nc - phase: 0 
         (153 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g01180.1                                                        64   6e-11
Glyma12g36430.1                                                        60   7e-10
Glyma13g27120.1                                                        58   3e-09

>Glyma04g01180.1
          Length = 95

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 1  MAEAQIRDQYGNPIQLTDQFGNPVKLTDEHGNPIHL 36
          MAEAQ+RDQ+GNP+ LTDQ+GNPV LTDE GNP+ L
Sbjct: 1  MAEAQLRDQHGNPVPLTDQYGNPVILTDERGNPVQL 36


>Glyma12g36430.1
          Length = 135

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 32/36 (88%)

Query: 1  MAEAQIRDQYGNPIQLTDQFGNPVKLTDEHGNPIHL 36
          MA+ ++RD++GNP++LTD +GNPV LTDE GNP+HL
Sbjct: 1  MAQVELRDEHGNPVELTDAYGNPVWLTDEKGNPVHL 36


>Glyma13g27120.1
          Length = 139

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 31/36 (86%)

Query: 1  MAEAQIRDQYGNPIQLTDQFGNPVKLTDEHGNPIHL 36
          MA+ ++RD++GNP++LTD +GNPV LTDE G P+HL
Sbjct: 1  MAQVELRDEHGNPVELTDAYGNPVWLTDEKGKPVHL 36