Miyakogusa Predicted Gene

chr1.CM0113.140.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0113.140.nc - phase: 0 
         (153 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21490.1 | Symbols: LEA | LEA (DEHYDRIN LEA) | chr2:9213289-9...    49   2e-06
AT4G39130.1 | Symbols:  | dehydrin family protein | chr4:1822817...    43   1e-04

>AT2G21490.1 | Symbols: LEA | LEA (DEHYDRIN LEA) |
          chr2:9213289-9214120 REVERSE
          Length = 185

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 27/34 (79%), Gaps = 1/34 (2%)

Query: 4  AQIRDQYGNPIQLTDQFGNP-VKLTDEHGNPIHL 36
          A +RD+ GNPI LTD  GNP V LTDEHGNP++L
Sbjct: 2  ADLRDEKGNPIHLTDTQGNPIVDLTDEHGNPMYL 35


>AT4G39130.1 | Symbols:  | dehydrin family protein |
          chr4:18228177-18228838 REVERSE
          Length = 151

 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 4  AQIRDQYGNPIQLTDQFGNPVKLTDEHGNPIHL 36
          A ++D+ GNPI LTD  G P +L DE GN +HL
Sbjct: 2  ADLKDERGNPIYLTDAHGEPAQLMDEFGNAMHL 34