Miyakogusa Predicted Gene

chr1.CM0105.1090.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0105.1090.nc - phase: 0 
         (381 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC183502_34.4 Initiation factor 2B related chr08_pseudomole...   448   e-126
IMGA|AC183502_35.4 Initiation factor 2B related  chr08_pseudomol...    92   5e-19

>IMGA|AC183502_34.4 Initiation factor 2B related
           chr08_pseudomolecule_IMGAG_V2 6950479-6948216 E
           EGN_Mt071002 20080227
          Length = 231

 Score =  448 bits (1153), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/231 (94%), Positives = 224/231 (96%)

Query: 151 MRYVTRTAALEYEDFNSAKSRLIERADKFGEISYKARKIIAMLSQDFIFDGCTILVHGFS 210
           MRYVTRT+ALE+EDFNSAK+RLIERADKFGEISYKARKII MLSQDFIFDGCTILVHGFS
Sbjct: 1   MRYVTRTSALEFEDFNSAKARLIERADKFGEISYKARKIIGMLSQDFIFDGCTILVHGFS 60

Query: 211 RVVFEVLKLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLVIDSAVAYTMDEVD 270
           RVVFEVLKLAA NKK FRVFCTEGRPDRTGLRLSN+LAKLDVPVKLVIDSAVAYTMDEVD
Sbjct: 61  RVVFEVLKLAAHNKKRFRVFCTEGRPDRTGLRLSNDLAKLDVPVKLVIDSAVAYTMDEVD 120

Query: 271 MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDLSPALR 330
           MV VGADGVVESGGIINMMGTYQIALVA SMNKPVYVAAESYKFAR YPLDQKDL+PALR
Sbjct: 121 MVLVGADGVVESGGIINMMGTYQIALVAKSMNKPVYVAAESYKFARHYPLDQKDLAPALR 180

Query: 331 PIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 381
           P+DFGVPIPSKVEVE SARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL
Sbjct: 181 PVDFGVPIPSKVEVECSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 231


>IMGA|AC183502_35.4 Initiation factor 2B related
           chr08_pseudomolecule_IMGAG_V2 6951643-6950686 E
           EGN_Mt071002 20080227
          Length = 129

 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 62/108 (57%), Gaps = 3/108 (2%)

Query: 30  ATSKPNPNISAYYETRAAHHGVVTSDWLAQAQAAIQEPTEL---EVNDKIKQQHPFSVID 86
           A S  NP ISAYY+TR AH GVV+++WLAQAQ+A      L     N    +   FSVID
Sbjct: 5   APSMENPKISAYYQTRLAHFGVVSTEWLAQAQSATNPNPPLPSSSTNSHTDKDTNFSVID 64

Query: 87  EFNNWRKQPHXXXXXXXXXXXXXXXXSSEATTMMELEIDLHKASDSLK 134
           EFN WR  P                 +S+A+TMM+LEI+L  ASD+LK
Sbjct: 65  EFNRWRNHPDLAEAVAAIRALAAVISASKASTMMQLEIELKNASDTLK 112