Miyakogusa Predicted Gene

chr1.CM0094.310.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0094.310.nc + phase: 0 
         (990 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC139708_18.5 Tudor; Staphylococcus nuclease subtype chr03_...  1724   0.0  

>IMGA|AC139708_18.5 Tudor; Staphylococcus nuclease subtype
           chr03_pseudomolecule_IMGAG_V2 27356244-27363016 F
           EGN_Mt071002 20080227
          Length = 992

 Score = 1724 bits (4466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 832/981 (84%), Positives = 906/981 (92%), Gaps = 5/981 (0%)

Query: 1   MASAATGATGWYRGRVKAVPSGDCLVIVAVAS-SKPGPLPEKSITLSSLIAPRLARRGGV 59
           MA+ A G + WY+ +VKAVPSGDC+V+V+VA+ +K G LPEKSITLSSLIAPRLARRGGV
Sbjct: 1   MAATAAGNSAWYKAKVKAVPSGDCIVVVSVAANAKLGVLPEKSITLSSLIAPRLARRGGV 60

Query: 60  DEPFAWESREYLRKLCIGKEVTFRVDYSVASINRDFGTVFLGDKNVGVLVVSQGWAKVRE 119
           DEPFAWESRE+LRKL IGKE+TFR+DY+V SINR+FGTVFLGDKNV +LVVSQGWAKVRE
Sbjct: 61  DEPFAWESREFLRKLLIGKEITFRIDYTVPSINREFGTVFLGDKNVALLVVSQGWAKVRE 120

Query: 120 QGQQKGEVSPYLAELLRLEEQAKQEGLGRWSKVPGAAEASIRNLPPSAIGDASNFDAMGL 179
           QGQQKGE SP+LAELLRLEEQAKQEGLGRWSKVPGAAEAS+RNLPPSA+GDASNFDAMGL
Sbjct: 121 QGQQKGEASPFLAELLRLEEQAKQEGLGRWSKVPGAAEASVRNLPPSALGDASNFDAMGL 180

Query: 180 LAANKGSPMEAIVEQVRDGSTLRVYLLPEFQFVQVFVAGIQSPQMGRRAAPETVVETELT 239
           LA NKG PMEA+VEQVRDGSTLR+YLLPEFQFVQVFVAGIQ+PQMGRRAAPE+VV  E+T
Sbjct: 181 LAKNKGVPMEALVEQVRDGSTLRIYLLPEFQFVQVFVAGIQAPQMGRRAAPESVVVPEVT 240

Query: 240 VDDNGGDVPGEPRPPLTSAQRLAVTTTT-ETAADPFGPDAKFFTEMRVLNRDVRIVLEGV 298
           VD   GDVP EPR PLTSAQRLAV+ +  ET+ADPFG DAKFFTEMRVLNRDVRIVLEGV
Sbjct: 241 VDTTNGDVPAEPRAPLTSAQRLAVSASAAETSADPFGADAKFFTEMRVLNRDVRIVLEGV 300

Query: 299 DKFSNLIGSVYYPDGESAKDLALELVENGYAKYVEWSANMMEEEAKRRLKTAELEAKKSR 358
           DKFSNLIGSVYYPDGESAKDLALELVENG+AKYVEWSANMME+EAK++LK AELEAKK+R
Sbjct: 301 DKFSNLIGSVYYPDGESAKDLALELVENGFAKYVEWSANMMEDEAKKKLKAAELEAKKTR 360

Query: 359 LRMWTNYVPPASNSKAIHNQNFTGKVVEVVSGDCIIVADDSIPYGSPLAERRVNLSSIRC 418
           LR+WTNYVPP SNSKAIH+QNFTGKVVEVVSGDC+IVADDSIPYGSP AERRVNLSSIRC
Sbjct: 361 LRIWTNYVPPTSNSKAIHDQNFTGKVVEVVSGDCVIVADDSIPYGSPQAERRVNLSSIRC 420

Query: 419 PKVGNPRRDEKPAPYAREAKEFLRTRLLGRQVNVEMEYSRKIVPTDGSAVPSPAADSRVM 478
           PK+GNPRRDEKPAPYAREAKEFLRTRL+GRQVNV+MEYSRK+ P DGSAVP  A DSRVM
Sbjct: 421 PKMGNPRRDEKPAPYAREAKEFLRTRLIGRQVNVQMEYSRKVGPVDGSAVPPGAVDSRVM 480

Query: 479 DFGSVFLLSATKADSDDTPS-SVPSAGSQPTGVNVGELVVGRGFGTVIRHRDFEERSNYY 537
           DFGSVF+LS+ KAD DD PS +VP+  SQ TG+NV EL++GRGFGTVIRHRDFEERSN+Y
Sbjct: 481 DFGSVFVLSSGKADGDDAPSPAVPA--SQQTGLNVAELIIGRGFGTVIRHRDFEERSNFY 538

Query: 538 DALLTAESRALSGRKGIHSAKDPPVMHITDLTTTSAKKAKDFLPFLHRSRRVPAVVEYVL 597
           DALL AE+RA+SGRKGIHSAKDPPVMHITDL T SAKKAKDFLPFLHRSRRVPAVVEYV 
Sbjct: 539 DALLAAEARAISGRKGIHSAKDPPVMHITDLITASAKKAKDFLPFLHRSRRVPAVVEYVF 598

Query: 598 SGHRFKLLIPKETCSIAFALSGVRCPGRGEPYSEEAIALMRRKIMQRDVEIEVETVDRNG 657
           SGHRFKLLIPKETCSIAFA SGVRCPGR EPYS+EAIALMRR+IMQRDVEIEVETVDR G
Sbjct: 599 SGHRFKLLIPKETCSIAFAFSGVRCPGREEPYSDEAIALMRRRIMQRDVEIEVETVDRTG 658

Query: 658 TFLGSLWESRTNVALTLLEAGLAKLQTSFGSDRIPEFHLLDRAEQSAKKQKLKIWENFVE 717
           TFLGSLWESR N A+ LLEAGLAKLQTSFGSDRIP+ H+L++AEQSAK +KLKIWEN+VE
Sbjct: 659 TFLGSLWESRANGAVPLLEAGLAKLQTSFGSDRIPDLHVLEQAEQSAKSKKLKIWENYVE 718

Query: 718 GEEVSNGANVESKQQEVLKVIVTEVLGGGKFYVQTVGDQKIASIQQQLAALNLKEAPVLG 777
           GE V +GANVESKQQEVLKV VTEVLGGGKFYVQTVGDQKIASIQ QLA+LNLK+APV+G
Sbjct: 719 GEVVPSGANVESKQQEVLKVTVTEVLGGGKFYVQTVGDQKIASIQNQLASLNLKDAPVIG 778

Query: 778 AFSPKKGDIVLCYFHADKSWYRAMVVNTPRGPVESPEDIFEVFYIDYGNQEQVAYSQLRP 837
           AF+PKKGDIVLCYFHAD SWYRAMVVNTPRGPVES +D FEVFYIDYGNQE V YSQLRP
Sbjct: 779 AFNPKKGDIVLCYFHADSSWYRAMVVNTPRGPVESSKDAFEVFYIDYGNQEVVPYSQLRP 838

Query: 838 LDPSVSAAPGLAQLCSLAYIKSPNVEEDFGQEAAEYLCELTLNSGKEFRAQVEERDTSGG 897
           LDPSVSAAPGLAQLCSLAYIK PN+EEDFGQEAAEYL ELTL+SGKEFRA VEE+DT+GG
Sbjct: 839 LDPSVSAAPGLAQLCSLAYIKLPNLEEDFGQEAAEYLSELTLSSGKEFRAMVEEKDTTGG 898

Query: 898 KLKGQGTGTILAVTLVAVDAEISVNAAMLQEGLARMEKRNRWDRKERKVGLDSLEKFQDD 957
           K+KGQGTG I+AVTLVAVD+EISVNAAMLQEGLARMEKRNRWDR  RK  LD+LE FQ +
Sbjct: 899 KVKGQGTGPIIAVTLVAVDSEISVNAAMLQEGLARMEKRNRWDRTARKQALDNLEMFQGE 958

Query: 958 ARKERRGMWQYGDVESDDEDN 978
           AR  RRGMWQYGD++SDDED 
Sbjct: 959 ARTARRGMWQYGDIQSDDEDT 979