Miyakogusa Predicted Gene
- chr1.CM0094.140.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr1.CM0094.140.nc - phase: 0
(620 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00650.1 | Symbols: FLA, FRI | FRI (FRIGIDA) | chr4:269026-27... 197 1e-50
AT5G48385.1 | Symbols: | similar to hydroxyproline-rich glycopr... 100 3e-21
AT3G22440.1 | Symbols: | hydroxyproline-rich glycoprotein famil... 86 6e-17
AT4G14900.1 | Symbols: | hydroxyproline-rich glycoprotein famil... 70 5e-12
AT1G31814.1 | Symbols: FRL2 | FRL2 (FRIGIDA LIKE 2) | chr1:11412... 52 1e-06
AT5G27230.1 | Symbols: | similar to hydroxyproline-rich glycopr... 45 1e-04
AT5G16320.1 | Symbols: FRL1 | FRL1 (FRIGIDA LIKE 1) | chr5:53445... 42 8e-04
>AT4G00650.1 | Symbols: FLA, FRI | FRI (FRIGIDA) |
chr4:269026-270363 FORWARD
Length = 318
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/268 (39%), Positives = 167/268 (62%), Gaps = 29/268 (10%)
Query: 40 QLAKSVNELTDLATAIQAFKSRYDELQRHLNYIERTIDTRTKE----LQSRT-------- 87
Q KS++EL + A++ FK ++D+LQ+H+ IE ID++ + L +R
Sbjct: 54 QFLKSIDELAAFSVAVETFKRQFDDLQKHIESIENAIDSKLESNGVVLAARNNNFHQPML 113
Query: 88 --PKPAVEKVTVVNGDVSRAELKTKAEGDVKGEENELVSLCQTMCSRGLRRYILSHLAEV 145
P+ V T V E+ + +GE +C+ MCS+GLR+YI +++++
Sbjct: 114 SPPRNNVSVETTVTVSQPSQEIVPETSNKPEGER-----ICELMCSKGLRKYIYANISDQ 168
Query: 146 KMLGEQVPEALKSAPKPSKLVFECIGRFFLQGSKAYTKDSPMVTARLASVLVLEYYLL-- 203
L E++P ALK A +P+K V +CIG+F+LQG +A+TK+SPM +AR S+L+LE +LL
Sbjct: 169 AKLMEEIPSALKLAKEPAKFVLDCIGKFYLQGRRAFTKESPMSSARQVSLLILESFLLMP 228
Query: 204 ---SGRVDSEAQEEDPSLNKEASQAAVSWRKRLIVEGGVANACEIDARGLVLFIACYGIP 260
G+V E+ +D EA AAV+WRKRL+ EGG+A A ++DARGL+L +AC+G+P
Sbjct: 229 DRGKGKVKIESWIKD-----EAETAAVAWRKRLMTEGGLAAAEKMDARGLLLLVACFGVP 283
Query: 261 IDFLNEDVWNLVRLSNPREISKALRQSQ 288
+F + D+ +L+R+S EI+ AL++SQ
Sbjct: 284 SNFRSTDLLDLIRMSGSNEIAGALKRSQ 311
>AT5G48385.1 | Symbols: | similar to hydroxyproline-rich
glycoprotein family protein [Arabidopsis thaliana]
(TAIR:AT3G22440.1); similar to unknown [Populus
trichocarpa] (GB:ABK94872.1); contains InterPro domain
Frigida-like (InterPro:IPR012474) |
chr5:19626697-19628938 FORWARD
Length = 558
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 154/321 (47%), Gaps = 28/321 (8%)
Query: 121 ELVSLCQTMCSRGLRRYILSHLAEVKMLGEQVPEALKSAPKPSKLVFECIGRFF-LQGSK 179
+L+ LC M S GL +++ + + L E++P A ++A P+ LV + + F+ ++
Sbjct: 174 QLLKLCGDMDSTGLHKFVSDNRKNLASLKEEIPMAFRAAANPASLVLDSLEGFYPMEAPT 233
Query: 180 A-YTKDSPMVTARLASVLVLEYY--LLSGRVDSEAQEEDPSLN--KEASQAAVSWRKRL- 233
A KD+ ++ R ++++E LLSG +D S N A A W L
Sbjct: 234 ADGKKDANLLGMRRTCIMLMECLSILLSG-LDRNCLAVVLSQNVKHRAKTIAEGWNPLLE 292
Query: 234 IVEGGVANACEIDARGLVLFIACYGIPIDFLNEDVWNLVRLSNPREISKALRQSQALLMR 293
++ N ++A + +A + I DF +++ L+ + + R + L +S L +
Sbjct: 293 SLDMDACNGNSLEAHAFLQLLATFAIVADFKEDELLKLIPMVSRRRQAAELCRSLGLAEK 352
Query: 294 VTDIAEVMMKRGKVVDALDLAYTFGFEEKFSPKTTLTSFLYKSDEVWKKAKQDARDFPIL 353
+ + EV++ GK +DA++LA+ F E+FSP + L S+L ++ + + P +
Sbjct: 353 MPGVIEVLVNSGKQIDAVNLAFAFELTEQFSPVSLLKSYLIEARRSSPQGR-PGNASPAV 411
Query: 354 LKEANEKYLAALKSIVNSLEGHKVDLEELLPGWELKEKILILENDISDINKIFDDTLVNK 413
E NE+ L LK+++ +E H LEE P L ++IL LE K
Sbjct: 412 QDEFNERELIGLKTVIKCIEEH--SLEEQYPVEPLHKRILQLE----------------K 453
Query: 414 RKMDKNNSSIKMKVPEAKRTR 434
K DK ++ MK P+ KR R
Sbjct: 454 AKADKKRATEPMK-PQPKRPR 473
>AT3G22440.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr3:7959861-7961893 FORWARD
Length = 532
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 123/493 (24%), Positives = 207/493 (41%), Gaps = 69/493 (13%)
Query: 46 NELTDLATAI-QAFKSRYDELQRHLNYIERTIDTRTKELQSR--TPKPAVEKVTVVNGDV 102
EL+D T++ Q + + L++ + ++ T + L+ R T +VE V G+
Sbjct: 36 QELSDHFTSLEQNLMKKSEALKQMIETLDNQTQTSLESLKRREVTIDHSVEIVAGKVGER 95
Query: 103 SRAELKT--KAE-----------GDVKGEE---NELVSLCQTMCSRGLRRYILSHLAEVK 146
+RA L++ KA GDV EE + L SLC M +RG ++ + E++
Sbjct: 96 ARAALESLEKARDGCGDGSNDDSGDVDDEEGLLSALKSLCLKMDARGFWNFVTARKKELE 155
Query: 147 MLGEQVPEALKSAPKPSKLVFECIGRFFLQGSKAYTKDSPMVTARLASVLVLEYY---LL 203
L ++P AL P+ LV E I F ++ D A V++LE ++
Sbjct: 156 NLRSKIPAALVDCVDPAMLVLEAISEVFPVDTRG---DKVSNDYGWACVVILESLTPVIV 212
Query: 204 SGRVDSEAQEEDPSLNKEASQAAVSWRKRLIVEGGVANACEIDARGLVLFIACYGIPIDF 263
+ PS+ ++A + A +W+K L G + N D + + +GI
Sbjct: 213 DPVIGKSRLLVTPSVKEKAKEIAETWKKSLEERGRIENVKTPDVHTFLQHLVTFGI---V 269
Query: 264 LNEDVW---NLVRLSNPREISKALRQSQALLMRVTDIAEVMMKRGKVVDALDLAYTFGFE 320
+ED+ LV S R+ L S L ++ D+ E ++ RG+ +DA+ Y G
Sbjct: 270 KSEDLALYRKLVVGSAWRKQMPKLAVSVGLGDQMPDMIEELISRGQQLDAVHFTYEVGLV 329
Query: 321 EKFSPKTTLTSFLYKSDEVWKKAKQDARDFPILLKEANEKYLAALKSIVNSLEGHKVDLE 380
+KF P L ++L + + +D+ + K +ALK+++ +E +K LE
Sbjct: 330 DKFPPVPLLKAYLRDAKKSAASIMEDSSNTGRATHLVARKEQSALKAVLKCIEEYK--LE 387
Query: 381 ELLPGWELKEKILILENDISDINKIFDDTLVNKRKMDKNNSSIKMKVPEAKRTRF----- 435
E P LK+++ LE T KRK VP KRTR
Sbjct: 388 EEFPPENLKKRLDQLEK-----------TKTEKRK--------PAAVPANKRTRASYNGP 428
Query: 436 --PVKDQPVTSPSLARLHEQRFASHMDGSLTPNFVDGRLYGHPNYPSAAYAHHIGSVSGS 493
P K +T+ ++ R SH +P + Y P+ P+ Y++ S
Sbjct: 429 MPPAKAGRITNAYVSSFPFIRSPSH-----SPQYASPAAY--PSPPTTVYSNRSPPYPYS 481
Query: 494 ---LPESYHGSAV 503
+P SY GS +
Sbjct: 482 PEIIPGSYQGSPI 494
>AT4G14900.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr4:8521754-8523602 REVERSE
Length = 532
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 100/410 (24%), Positives = 166/410 (40%), Gaps = 60/410 (14%)
Query: 114 DVKGEENELVSLCQTMCSRGLRRYILSHLAEVKMLGEQVPEALKSAPKPSKLVFECIGRF 173
D G + L SLC M +RG ++++ E++ L Q+P AL P KLV E +
Sbjct: 119 DGDGLLSALKSLCLKMDARGFWGFVIARKKELENLRSQIPVALVDCVDPPKLVLEAVSEV 178
Query: 174 F----LQGSKAYTKDSPMVTARLASVLVLEYYLLSGRVDSEAQEE----DPSLNKEASQA 225
F G + + D A V++LE L+ VD + PS+ ++A +
Sbjct: 179 FPVDKRGGGEKVSND-----FGWACVVILE-SLIPVMVDPVMGKSRLLVTPSVKEKAKEI 232
Query: 226 AVSWRKRLIVEGGVANACEIDARGLVLFIACYGIPIDFLNEDVWNLVRL----SNPREIS 281
A +W+ L GG+ N D + + +GI + +D L R S R+
Sbjct: 233 AETWKASLEERGGIENVKTPDVHTFLQHLVTFGI----VKKDDLALYRKLVVGSAWRKQM 288
Query: 282 KALRQSQALLMRVTDIAEVMMKRGKVVDALDLAYTFGFEEKFSPKTTLTSFLYKSDEVWK 341
L S L ++ D+ E ++ RG+ +DA+ + G F P L ++L + +
Sbjct: 289 PKLAVSVGLGDQMPDMIEELIIRGQQLDAVHFTFEVGLVHLFPPVPLLKAYLRDAKKATA 348
Query: 342 KAKQDARDFPILLKEANEKYLAALKSIVNSLEGHKVDLEELLPGWELKEKILILENDISD 401
D+ + K +AL++++ +E +K LEE P LK+++ LE
Sbjct: 349 LITDDSNNSGRSAHLVARKEQSALRAVLKCIEEYK--LEEEFPPENLKKRLDQLE----- 401
Query: 402 INKIFDDTLVNKRKMDKNNSSIKMKVPEAKRTRF-------PVKDQPVTSPSLARLHEQR 454
K K +K ++ +P KRTR P K +T+ ++
Sbjct: 402 -----------KTKTEKRKPAV---IPANKRTRASYSGPMPPAKAGRITNAYVSSFPPPP 447
Query: 455 FASHMDGSLTPNFVDGRLYGHPNY---PSAAYAHHIGSVSGSLPESYHGS 501
S +P YG P Y P Y++ S PE+ HGS
Sbjct: 448 PTFIRSQSHSPQ------YGVPAYTTSPPTIYSNRSPPYQYS-PEAVHGS 490
>AT1G31814.1 | Symbols: FRL2 | FRL2 (FRIGIDA LIKE 2) |
chr1:11412966-11414387 REVERSE
Length = 473
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/402 (19%), Positives = 165/402 (41%), Gaps = 41/402 (10%)
Query: 41 LAKSVNELTDLATAIQAFKSRYDELQRH-------LNYIERTIDTRTKELQSRTPKPAVE 93
+A S+N++ + Q K +D+LQ H N ID+ LQS
Sbjct: 7 IAASINQIDEKK---QKLKKAFDDLQAHRSLLSPSFNLSWSEIDSHFSSLQSSLFNRLQS 63
Query: 94 KVTVVN-GDVSRAELKTKAEGDVKGEENELVSLCQTMCSRGLRRYILSHLAEVKMLGEQV 152
VT N G++ E T + EL C+ +GL Y++ + + + E++
Sbjct: 64 AVTSSNSGNI---ETPTAVTTETPVLWPELRKFCEKNDGKGLGNYMIENSRKRLSINEEL 120
Query: 153 PEALKSAPKPSKLVFECIGRFFLQGSKAYTKDSPMVTARLASVLVLEYYLLSGRVDSEAQ 212
P A++ + P+ LV + I +GS + S +AR V + LL ++ A
Sbjct: 121 PNAIRCSENPAPLVLDAI-----EGSYHCSSPSSSSSARAIDVKRIFVLLLEALIEINAN 175
Query: 213 EEDPSLNKEASQAAVSWRKRLIVEGGVANACEIDARGLVLFIACYGIPIDFLNEDVWNLV 272
+ L + A A W+ + G + +A G + +A + + F E++ + +
Sbjct: 176 LTN-DLRERARTIAYDWKPNI---GNKPS----EALGFLHLVAAFELGSLFSTEEICDYI 227
Query: 273 RL-SNPREISKALRQSQALLMRVTDIAEVMMKRGKVVDALDLAYTFGFEEKFSPKTTLTS 331
L S ++ + ++ R+ + + + G+++ A+ Y +F P + L +
Sbjct: 228 FLISKYKQATTICKKIGLDRNRIGVLVQKFLDTGRLLVAIRFIYENEMVGEFEPVSILKT 287
Query: 332 FLYKSDEVWKKAKQDARDFPILLKEANEKYLAALKSIVNSLEGHKVDLEELLPGWELKEK 391
L S E K+ + + EA +K L+AL++++ ++ ++ E
Sbjct: 288 SLKNSREAAKRVCAEGNYSLKVQNEATDKELSALRAVIKVVKEKNIESE----------- 336
Query: 392 ILILENDISDINKIFDDTLVNKRKMDKNNSSIKMKVPEAKRT 433
+E + + K +D +++ K NS + P+ ++
Sbjct: 337 --FMEEKLEECVKELEDQKAQRKRATKFNSPANPQQPQEQKV 376
>AT5G27230.1 | Symbols: | similar to hydroxyproline-rich
glycoprotein family protein [Arabidopsis thaliana]
(TAIR:AT3G22440.1); similar to unknown [Picea
sitchensis] (GB:ABK24390.1); contains InterPro domain
Frigida-like (InterPro:IPR012474) | chr5:9584258-9587841
FORWARD
Length = 948
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 79/161 (49%), Gaps = 5/161 (3%)
Query: 221 EASQAAVSWRKRLIVEGGVANACEIDARGLVLFIACYGIPIDFLNEDVWNLVRLSNPREI 280
+A + AV W+ ++ + +++ + F+ +GI +F +D+ L+ S + +
Sbjct: 630 DAKKLAVYWKDKI----AKSKRDQLEVICFLQFLGIFGIVSEFKADDLLGLLDNSYWQTV 685
Query: 281 SKALRQSQALLMRVTDIAEVMMKRGKVVDALDLAYTFGFEEKFSPKTTLTS-FLYKSDEV 339
S L Q L + + ++K G + A+D Y+FG +F P + + + L + E
Sbjct: 686 SPDLCQFLGLDDAIPGFIQNLIKTGHRIKAIDYIYSFGMVHRFQPVSAIINDSLRITKES 745
Query: 340 WKKAKQDARDFPILLKEANEKYLAALKSIVNSLEGHKVDLE 380
+K+ ++A++ A ++ + AL++ + + HK++ E
Sbjct: 746 AEKSYREAKNESTTQVAAIDRQVRALRAAIKCISCHKLESE 786
>AT5G16320.1 | Symbols: FRL1 | FRL1 (FRIGIDA LIKE 1) |
chr5:5344510-5345922 FORWARD
Length = 470
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 127/281 (45%), Gaps = 20/281 (7%)
Query: 119 ENELVSLCQTMCSRGLRRYILSHLAEVKMLGEQVPEALKSAPKPSKLVFECIGRFFLQGS 178
E EL +LC+ + GL +Y++ + L ++V A++ +P + +V + I +GS
Sbjct: 98 EPELRALCEKIDGIGLIKYLIRIWDDETPLNQEVSAAIRYSPDTASMVLDAI-----EGS 152
Query: 179 KAYTKDSPMVTARLASVLVLEYYLLSGRVDSEAQEEDPSLNKEASQAAVSWRKRLIVEGG 238
YT S + + V VL L+ ++ A + N+ A + A W+ ++ V+
Sbjct: 153 N-YTPSSSGRSFDVRRVFVL---LMEVLIEINANITVDTRNR-AKKLAYHWKSKVGVK-- 205
Query: 239 VANACEIDARGLVLFIACYGIPIDFLNEDVWNLV-RLSNPREISKALRQSQALLMRVTDI 297
+A + +A + + +F E++ + V ++ ++ + + RV +
Sbjct: 206 -----PFEALVFLHLVAAFELGSEFDTEELSDYVFMIAKYKQATLVCNKIGVDRKRVGKL 260
Query: 298 AEVMMKRGKVVDALDLAYTFGFEEKFSPKTTLTSFLYKSDEVWKKAKQDARDFPILLKEA 357
+ ++ GK + A+ Y G ++F P L S++ E + + EA
Sbjct: 261 IKTLLDSGKPILAVKFMYECGMTDEFEPIPVLKSYIKDCREAALRVCVEDNYSLKSQNEA 320
Query: 358 NEKYLAALKSIVNSLEGHKVDLEELLPGWELKEKILILEND 398
++K ++ALK ++ ++ +LE +++E++ LE +
Sbjct: 321 SDKEVSALKPLIKIIKDQ--NLESEFTQEKVEERVEELEKN 359