Miyakogusa Predicted Gene

chr1.CM0088.100.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0088.100.nd + phase: 0 /partial
         (261 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g45670.1                                                       433   e-122

>Glyma01g45670.1
          Length = 1135

 Score =  433 bits (1114), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/263 (77%), Positives = 232/263 (88%), Gaps = 5/263 (1%)

Query: 1    MSCITHAKKASQLVLPDDYIFFAHLLLCRVYAMKGDRLNFQKEYIRCFELKTDCHIGWIC 60
            M+CITHAKKAS+LVLPDDY+FFAHLLLCRVYAMKGD L+FQKEYIRC ELKTD HIGWIC
Sbjct: 871  MTCITHAKKASELVLPDDYLFFAHLLLCRVYAMKGDHLSFQKEYIRCLELKTDYHIGWIC 930

Query: 61   LKLMECQYEMLINSNFMDLSIEECIEKGG---NRWMAVYNLVKGMVSLQRRDLLSAEEFM 117
            LKLMECQYE+ I+SN +DL+ EEC+++ G   N WMAVYNLV+GM+SLQ+RDL+SAE+FM
Sbjct: 931  LKLMECQYELQIDSNTIDLNFEECVKRSGKLCNMWMAVYNLVRGMISLQKRDLVSAEDFM 990

Query: 118  AQACSLVGFDSSVFLCHGAICMELVRQCGGPQFLSQAVKSLTKVYELSLAPLPFTSILVA 177
            AQACSL GF+S +FLCHGAICMELVRQC G QFLS+A+ SLTKV+E SL PLPF S+LVA
Sbjct: 991  AQACSLAGFESCLFLCHGAICMELVRQCHGSQFLSRAINSLTKVHEHSLIPLPFVSVLVA 1050

Query: 178  QAEGSLGSKERWDRNLHLEWCTWPSEMRPAELYFHMHLLARQLKVGLRTTSNVESYQSPL 237
            QAEGS GSKERW+RNL LEW  WP EMRPAELYF MH+LARQLKVG    +++ES QSP 
Sbjct: 1051 QAEGSHGSKERWNRNLRLEWYNWPPEMRPAELYFQMHMLARQLKVG--PNASIESTQSPH 1108

Query: 238  RWVIRAIHINPSCMRYWRILQKL 260
            RWVIRAIH+NPSCMRYWRILQKL
Sbjct: 1109 RWVIRAIHMNPSCMRYWRILQKL 1131