Miyakogusa Predicted Gene

chr1.CM0088.100.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0088.100.nd + phase: 0 /partial
         (261 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC151525_48.4 tetratricopeptide repeat  chr05_pseudomolecul...   405   e-113

>IMGA|AC151525_48.4 tetratricopeptide repeat
           chr05_pseudomolecule_IMGAG_V2 37039182-37027961 E
           EGN_Mt071002 20080227
          Length = 668

 Score =  405 bits (1040), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/263 (74%), Positives = 226/263 (85%), Gaps = 4/263 (1%)

Query: 1   MSCITHAKKASQLVLPDDYIFFAHLLLCRVYAMKGDRLNFQKEYIRCFELKTDCHIGWIC 60
           MSCIT AKKASQLVLPDDY+FFAHLLLCR+YA+KGDRLNF+KEY +C EL+TDCHIGWIC
Sbjct: 405 MSCITDAKKASQLVLPDDYLFFAHLLLCRLYALKGDRLNFRKEYAKCLELRTDCHIGWIC 464

Query: 61  LKLMECQYEMLINSNFMDLSIEECIEKGGNRW---MAVYNLVKGMVSLQRRDLLSAEEFM 117
           LKLMECQYE+ I+SN +DL+ EECI++  N W   MA YNL + M  +Q+RDL+SAEEF+
Sbjct: 465 LKLMECQYELEIDSNAIDLNFEECIKRDENSWNVWMAAYNLARAMNLMQKRDLVSAEEFV 524

Query: 118 AQACSLVGFDSSVFLCHGAICMELVRQCGGPQFLSQAVKSLTKVYELSLAPLPFTSILVA 177
           AQACSL GF+S +FLCHGAICMELVRQ   P FLS+A+ SLTKV+ELSL PLPF SIL+A
Sbjct: 525 AQACSLAGFESCLFLCHGAICMELVRQHNSPHFLSRAINSLTKVHELSLIPLPFASILLA 584

Query: 178 QAEGSLGSKERWDRNLHLEWCTWPSEMRPAELYFHMHLLARQLKVGLRTTSNVESYQSPL 237
           QAEGSLGSKERWDRNL LEW  W SEMRPAE+YF MHL+ARQLKVG  ++ + ES QSP 
Sbjct: 585 QAEGSLGSKERWDRNLRLEWYNWSSEMRPAEVYFQMHLVARQLKVG-PSSISRESSQSPE 643

Query: 238 RWVIRAIHINPSCMRYWRILQKL 260
           RWVIRAIH+NPSCMRYWR+LQKL
Sbjct: 644 RWVIRAIHMNPSCMRYWRVLQKL 666