Miyakogusa Predicted Gene

chr1.CM0088.100.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0088.100.nd + phase: 0 /partial
         (261 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76630.1 | Symbols:  | tetratricopeptide repeat (TPR)-contain...   218   4e-57

>AT1G76630.1 | Symbols:  | tetratricopeptide repeat (TPR)-containing
            protein | chr1:28764593-28769680 FORWARD
          Length = 1064

 Score =  218 bits (554), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 112/201 (55%), Positives = 141/201 (70%), Gaps = 3/201 (1%)

Query: 4    ITHAKKASQLVLPDDYIFFAHLLLCRVYAMKGDRLNFQKEYIRCFELKTDCHIGWICLKL 63
            I HA+KAS L LP  Y+F  HL LCR YA  G   N Q+EY  C ELKTD +IGWICLKL
Sbjct: 856  INHARKASSLSLPSSYLFLGHLQLCRAYAANGSTKNMQEEYRACLELKTDSNIGWICLKL 915

Query: 64   MECQYEMLINSNFMDLSIEECIEKGGN---RWMAVYNLVKGMVSLQRRDLLSAEEFMAQA 120
            +E QY +  ++N +++S++EC  +  N    WMAVY+L +G+ S  ++D  SAEEF+AQA
Sbjct: 916  IESQYNLEPDANLLEMSLQECSSQKKNSWKEWMAVYSLARGLDSTGKKDFFSAEEFLAQA 975

Query: 121  CSLVGFDSSVFLCHGAICMELVRQCGGPQFLSQAVKSLTKVYELSLAPLPFTSILVAQAE 180
            CSL+  +S + LCHGA+CMEL RQ    QFLS AVKSL+KV   SL PLP    L+AQA 
Sbjct: 976  CSLLNSESCLLLCHGAVCMELARQSNDSQFLSLAVKSLSKVQASSLFPLPIVYTLLAQAH 1035

Query: 181  GSLGSKERWDRNLHLEWCTWP 201
            GSLGSKE+W++NL LEW  WP
Sbjct: 1036 GSLGSKEKWEKNLRLEWFCWP 1056