Miyakogusa Predicted Gene

chr1.CM0064.590.nc

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0064.590.nc - phase: 0 
         (423 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC138464_33.5 Proteasome component region PCI chr06_pseudom...   670   0.0  
IMGA|CU013532_1.4 Proteasome component region PCI chr03_pseudomo...    50   1e-06
IMGA|AC202491_16.3 Proteasome component region PCI chr01_pseudom...    50   2e-06

>IMGA|AC138464_33.5 Proteasome component region PCI
           chr06_pseudomolecule_IMGAG_V2 3823304-3814482 E
           EGN_Mt071002 20080227
          Length = 425

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/425 (74%), Positives = 366/425 (86%), Gaps = 2/425 (0%)

Query: 1   MDPLEALAAQIQGLSSTSGDIARLHIILKQADDSLRSESTRLSPLFSQLHPSHHTLGFLY 60
           MDPLE L AQIQGLSS+S DIARLH ILK +D++LRS+S+RL P+   + PS H+LGFLY
Sbjct: 1   MDPLEPLIAQIQGLSSSSADIARLHTILKHSDETLRSDSSRLYPILQLIDPSIHSLGFLY 60

Query: 61  VLEAFTSNSIS-KEQAETVIPVITGFVAACSVEQIRLAPEKFILVCKRLKDLVMLLEAPI 119
           +L+AF++ S+S ++QAE  +P+I  F+ ACSVEQIRLAPEKF+ VCKRLKDLV LLEAPI
Sbjct: 61  LLDAFSAASVSNQQQAEEAVPIIARFINACSVEQIRLAPEKFVSVCKRLKDLVTLLEAPI 120

Query: 120 RGVGPLLTAVRKLQLSPAHLTPLHSEFLQLCLLAKCYKTGFSILEDGVSEIEQPRDVFLY 179
           RGV P+ TA+RKLQ+S  HLTPLH+EFL LCLLAKCYKTG SIL+D V E++ PRD++LY
Sbjct: 121 RGVAPMFTALRKLQVSAEHLTPLHAEFLMLCLLAKCYKTGLSILDDDVFEVDHPRDLYLY 180

Query: 180 CYYGGMICVGLKRFRKALDLLHNVVTAPMTCMNAIAVEAYKKYILVSLIHHGQLASSLPK 239
           CYYGGMIC+G KRF+KALDLLHNVVTAPMT MNAI +EAYKKYILVSLI HGQ ++SLPK
Sbjct: 181 CYYGGMICIGQKRFQKALDLLHNVVTAPMTMMNAIVIEAYKKYILVSLIRHGQFSTSLPK 240

Query: 240 YTSSVAQRNLKHFCQ-PYIELATTYGTAKIAELEAYVNTNTETFVNDNNLGLVNQVVSSM 298
           Y S +AQRNLK FCQ P IELA TY   K+AE+EA+VN N   F  DNNLGL  QVVSSM
Sbjct: 241 YASPLAQRNLKLFCQNPCIELAQTYNNGKVAEVEAFVNANAGRFEADNNLGLAKQVVSSM 300

Query: 299 YKRNIQRLTQTYLTLSLQDIASTVQLNTSKEAEMHVLQMIQDGEIHATINQRDGMVRFLE 358
           YKRNIQRLTQTYLTLSL+DIA+TV LN++KEAEMHVLQMIQDGEI+ATINQ+DGMVRFLE
Sbjct: 301 YKRNIQRLTQTYLTLSLEDIANTVHLNSAKEAEMHVLQMIQDGEIYATINQKDGMVRFLE 360

Query: 359 DPEQYKTCEMIEHIDSSIQRIMELSRKLSTMDEQISCDQLYLSKAGRERPRYDSDDFDVP 418
           DPEQYKTCEMIEHIDSSIQRIM LS+KL+  DEQISCDQLYLSK GRER RYD DD+DVP
Sbjct: 361 DPEQYKTCEMIEHIDSSIQRIMALSKKLTATDEQISCDQLYLSKVGRERQRYDFDDYDVP 420

Query: 419 AKFNI 423
            +FNI
Sbjct: 421 TRFNI 425


>IMGA|CU013532_1.4 Proteasome component region PCI
           chr03_pseudomolecule_IMGAG_V2 13965333-13960373 F
           EGN_Mt071002 20080227
          Length = 490

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 17/196 (8%)

Query: 179 YCYYGGMI-CVGLKRFRKALDLLHNVVTAPMTCMNAIAVEAYKKYILVSLIHHGQLASSL 237
           Y +Y G I  + L+       LL     AP+       ++  K  I+V L     L   +
Sbjct: 244 YLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA-RGFRIQCNKWAIIVRL-----LLGEI 297

Query: 238 PKYTSSVAQRNLKHFCQPYIELATTYGTAKIAELEAYVNTNTE---TFVNDNNLGLVNQV 294
           P+ T  + Q+ ++   +PY EL       +I +LE + N   +   TF  D    L+ ++
Sbjct: 298 PERTVFM-QKGMEKALRPYFELT---NAVRIGDLELFRNIADKFATTFSADGTHNLIVRL 353

Query: 295 VSSMYKRNIQRLTQTYLTLSLQDIASTVQL---NTSKEAEMHVLQMIQDGEIHATINQRD 351
             ++ +  ++ ++ +Y  +SL D+A  ++L   N   +AE  V + I+DG I AT++  +
Sbjct: 354 RHNVIRTGLRNISISYSRISLADVAKKLRLDSPNPVADAESIVSKAIRDGAIDATLDHAN 413

Query: 352 GMVRFLEDPEQYKTCE 367
           G +   E  + Y T E
Sbjct: 414 GWMVSKETGDIYSTNE 429


>IMGA|AC202491_16.3 Proteasome component region PCI
           chr01_pseudomolecule_IMGAG_V2 8557221-8552014 E
           EGN_Mt071002 20080227
          Length = 483

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 93/196 (47%), Gaps = 17/196 (8%)

Query: 179 YCYYGGMI-CVGLKRFRKALDLLHNVVTAPMTCMNAIAVEAYKKYILVSLIHHGQLASSL 237
           Y +Y G I  + L+       LL     AP+       ++  K  I+V L     L   +
Sbjct: 236 YLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA-QGFRIQCNKWAIIVRL-----LLGEI 289

Query: 238 PKYTSSVAQRNLKHFCQPYIELATTYGTAKIAELEAYVNTNTE---TFVNDNNLGLVNQV 294
           P+ T  V Q+ ++   +PY EL       +I +LE + N   +   TF  D    L+ ++
Sbjct: 290 PERTIFV-QKGMEKALRPYFELT---NAVRIGDLELFRNVAEKYATTFNTDGTNNLIVRL 345

Query: 295 VSSMYKRNIQRLTQTYLTLSLQDIASTVQLNTSK---EAEMHVLQMIQDGEIHATINQRD 351
             ++ +  ++ ++ +Y  +SL D+A  ++L+++    +AE  + + I+DG I AT++  +
Sbjct: 346 RHNVIRTGLRNISISYSRISLADVAQKLRLSSADPIADAESIISKAIRDGAIDATLDHAN 405

Query: 352 GMVRFLEDPEQYKTCE 367
           G +   E  + Y T E
Sbjct: 406 GWMVSKEIGDIYSTNE 421