Miyakogusa Predicted Gene

chr1.CM0064.590.nc

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0064.590.nc - phase: 0 
         (423 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14250.1 | Symbols: CSN3, FUS11, COP13 | COP13 (CONSTITUTIVE ...   521   e-148
AT5G14250.2 | Symbols: CSN3, FUS11, COP13 | COP13 (CONSTITUTIVE ...   398   e-111
AT1G75990.1 | Symbols:  | 26S proteasome regulatory subunit S3, ...    57   2e-08
AT1G20200.1 | Symbols: EMB2719 | EMB2719 (EMBRYO DEFECTIVE 2719)...    56   5e-08

>AT5G14250.1 | Symbols: CSN3, FUS11, COP13 | COP13 (CONSTITUTIVE
           PHOTOMORPHOGENIC 13) | chr5:4597973-4600564 FORWARD
          Length = 429

 Score =  521 bits (1341), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 261/425 (61%), Positives = 313/425 (73%), Gaps = 2/425 (0%)

Query: 1   MDPLEALAAQIQGLSSTSGDIARLHIILKQADDSLRSESTRLSPLFSQLHPSHHTLGFLY 60
           ++ +EA+   IQGLS +  D++ LH +L+ A DSLR+E         QL  S H+LG+LY
Sbjct: 5   VNSVEAVITSIQGLSGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLGYLY 64

Query: 61  VLEAFTSNSISKEQAETVIPVITGFVAACSVEQIRLAPEKFILVCKRLKDLVMLLEAPIR 120
            LE  T   +SKE+A   IP+I  F+ +C   QIRLA  KF+ +CK LKD V+ L  P+R
Sbjct: 65  FLEVLTCGPVSKEKAAYEIPIIARFINSCDAGQIRLASYKFVSLCKILKDHVIALGDPLR 124

Query: 121 GVGPLLTAVRKLQLSPAHLTPLHSEFLQLCLLAKCYKTGFSILEDGVSEIEQPRDVFLYC 180
           GVGPLL AV+KLQ+S   LT LH + LQLCL AK YK+GFSIL D + EI+QPRD FLY 
Sbjct: 125 GVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSGFSILSDDIVEIDQPRDFFLYS 184

Query: 181 YYGGMICVGLKRFRKALDLLHNVVTAPMTCMNAIAVEAYKKYILVSLIHHGQLASSLPKY 240
           YYGGMIC+GLKRF+KAL+LL+NVVTAPM  +NAIA+EAYKKYILVSLIH+GQ  ++LPK 
Sbjct: 185 YYGGMICIGLKRFQKALELLYNVVTAPMHQVNAIALEAYKKYILVSLIHNGQFTNTLPKC 244

Query: 241 TSSVAQRNLKHFCQPYIELATTYGTAKIAELEAYVNTNTETFVNDNNLGLVNQVVSSMYK 300
            S+ AQR+ K++  PYIEL   Y   KI ELEA V      F  D NLGLV Q VSS+YK
Sbjct: 245 ASTAAQRSFKNYTGPYIELGNCYNDGKIGELEALVVARNAEFEEDKNLGLVKQAVSSLYK 304

Query: 301 RNIQRLTQTYLTLSLQDIASTVQLNTSKEAEMHVLQMIQDGEIHATINQRDGMVRFLEDP 360
           RNI RLTQ YLTLSLQDIA+ VQL  +KEAEMHVLQMIQDG+IHA INQ+DGMVRFLEDP
Sbjct: 305 RNILRLTQKYLTLSLQDIANMVQLGNAKEAEMHVLQMIQDGQIHALINQKDGMVRFLEDP 364

Query: 361 EQYKTCEMIEHIDSSIQRIMELSRKLSTMDEQISCDQLYLSKAGRERPRYD-SDDFD-VP 418
           EQYK+ EMIE +DS IQR + LS+ L  MDE +SCD LYL K GRER RYD  DDFD VP
Sbjct: 365 EQYKSSEMIEIMDSVIQRTIGLSKNLLAMDESLSCDPLYLGKVGRERQRYDFGDDFDTVP 424

Query: 419 AKFNI 423
            KF++
Sbjct: 425 QKFSM 429


>AT5G14250.2 | Symbols: CSN3, FUS11, COP13 | COP13 (CONSTITUTIVE
           PHOTOMORPHOGENIC 13) | chr5:4597973-4599989 FORWARD
          Length = 356

 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/338 (59%), Positives = 244/338 (72%)

Query: 1   MDPLEALAAQIQGLSSTSGDIARLHIILKQADDSLRSESTRLSPLFSQLHPSHHTLGFLY 60
           ++ +EA+   IQGLS +  D++ LH +L+ A DSLR+E         QL  S H+LG+LY
Sbjct: 5   VNSVEAVITSIQGLSGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLGYLY 64

Query: 61  VLEAFTSNSISKEQAETVIPVITGFVAACSVEQIRLAPEKFILVCKRLKDLVMLLEAPIR 120
            LE  T   +SKE+A   IP+I  F+ +C   QIRLA  KF+ +CK LKD V+ L  P+R
Sbjct: 65  FLEVLTCGPVSKEKAAYEIPIIARFINSCDAGQIRLASYKFVSLCKILKDHVIALGDPLR 124

Query: 121 GVGPLLTAVRKLQLSPAHLTPLHSEFLQLCLLAKCYKTGFSILEDGVSEIEQPRDVFLYC 180
           GVGPLL AV+KLQ+S   LT LH + LQLCL AK YK+GFSIL D + EI+QPRD FLY 
Sbjct: 125 GVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSGFSILSDDIVEIDQPRDFFLYS 184

Query: 181 YYGGMICVGLKRFRKALDLLHNVVTAPMTCMNAIAVEAYKKYILVSLIHHGQLASSLPKY 240
           YYGGMIC+GLKRF+KAL+LL+NVVTAPM  +NAIA+EAYKKYILVSLIH+GQ  ++LPK 
Sbjct: 185 YYGGMICIGLKRFQKALELLYNVVTAPMHQVNAIALEAYKKYILVSLIHNGQFTNTLPKC 244

Query: 241 TSSVAQRNLKHFCQPYIELATTYGTAKIAELEAYVNTNTETFVNDNNLGLVNQVVSSMYK 300
            S+ AQR+ K++  PYIEL   Y   KI ELEA V      F  D NLGLV Q VSS+YK
Sbjct: 245 ASTAAQRSFKNYTGPYIELGNCYNDGKIGELEALVVARNAEFEEDKNLGLVKQAVSSLYK 304

Query: 301 RNIQRLTQTYLTLSLQDIASTVQLNTSKEAEMHVLQMI 338
           RNI RLTQ YLTLSLQDIA+ VQL  +KEAEMHVLQM+
Sbjct: 305 RNILRLTQKYLTLSLQDIANMVQLGNAKEAEMHVLQMV 342


>AT1G75990.1 | Symbols:  | 26S proteasome regulatory subunit S3,
           putative (RPN3) | chr1:28528284-28530379 REVERSE
          Length = 487

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 17/205 (8%)

Query: 179 YCYYGGMI-CVGLKRFRKALDLLHNVVTAPMTCMNAIAVEAYKKYILVSLIHHGQLASSL 237
           Y +Y G I  + L+       LL     AP+  +    ++  K  I+V L     L   +
Sbjct: 241 YLFYLGKIRTIQLEYTDAKESLLQAARKAPVASL-GFRIQCNKWAIIVRL-----LLGEI 294

Query: 238 PKYTSSVAQRNLKHFCQPYIELATTYGTAKIAELEAYVNTN---TETFVNDNNLGLVNQV 294
           P+  S   Q+ ++   +PY EL       +I +LE +        +TF  D    L+ ++
Sbjct: 295 PE-RSIFTQKGMEKTLRPYFELT---NAVRIGDLELFGKIQEKFAKTFAEDRTHNLIVRL 350

Query: 295 VSSMYKRNIQRLTQTYLTLSLQDIASTVQLNTSK---EAEMHVLQMIQDGEIHATINQRD 351
             ++ +  ++ ++ +Y  +SLQD+A  ++LN++    +AE  V + I+DG I ATI+ ++
Sbjct: 351 RHNVIRTGLRNISISYSRISLQDVAQKLRLNSANPVADAESIVAKAIRDGAIDATIDHKN 410

Query: 352 GMVRFLEDPEQYKTCEMIEHIDSSI 376
           G +   E  + Y T E     +S I
Sbjct: 411 GCMVSKETGDIYSTNEPQTAFNSRI 435


>AT1G20200.1 | Symbols: EMB2719 | EMB2719 (EMBRYO DEFECTIVE 2719) |
           chr1:7001400-7004145 REVERSE
          Length = 488

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 17/205 (8%)

Query: 179 YCYYGGMI-CVGLKRFRKALDLLHNVVTAPMTCMNAIAVEAYKKYILVSLIHHGQLASSL 237
           Y +Y G I  + L+       LL     AP+  +    ++  K  ILV L     L   +
Sbjct: 242 YLFYLGKIRTIQLEYTDAKESLLQAARKAPIAAL-GFRIQCNKWAILVRL-----LLGEI 295

Query: 238 PKYTSSVAQRNLKHFCQPYIELATTYGTAKIAELEAYVNTNT---ETFVNDNNLGLVNQV 294
           P+  S   Q+ ++   +PY EL       +I +LE +        +TF  D    L+ ++
Sbjct: 296 PE-RSIFTQKGMEKALRPYFELT---NAVRIGDLELFRTVQEKFLDTFAQDRTHNLIVRL 351

Query: 295 VSSMYKRNIQRLTQTYLTLSLQDIASTVQLNTSK---EAEMHVLQMIQDGEIHATINQRD 351
             ++ +  ++ ++ +Y  +SL D+A  ++LN+     +AE  V + I+DG I ATI+ ++
Sbjct: 352 RHNVIRTGLRNISISYSRISLPDVAKKLRLNSENPVADAESIVAKAIRDGAIDATIDHKN 411

Query: 352 GMVRFLEDPEQYKTCEMIEHIDSSI 376
           G +   E  + Y T E     +S I
Sbjct: 412 GCMVSKETGDIYSTNEPQTAFNSRI 436