Miyakogusa Predicted Gene

chr1.CM0051.150.nc
Show Alignment: 

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr1.CM0051.150.nc - phase: 0 
         (3144 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC016683A_C01 KMC016683A_c01                                         117   7e-26

>KMC016683A_C01 KMC016683A_c01
          Length = 517

 Score =  117 bits (59), Expect = 7e-26
 Identities = 169/205 (82%), Gaps = 3/205 (1%)
 Strand = Plus / Minus

                                                                        
Query: 2916 tcaggagcatacgctgccaattatgggtcctgaaaggctacaagaaataggatcatatct 2975
            ||||||||| ||  |||| ||||||||||| || || || ||||||||||||||||||||
Sbjct: 517  tcaggagcacacattgcctattatgggtccagagagactgcaagaaataggatcatatct 458

                                                                        
Query: 2976 cacattgaaaaagatggagaagatggttcgtccatttgctatgcctgcagaagattttcc 3035
             ||| |  |||  |||||||| ||| ||||  ||||||| |||||||||||||| |||  
Sbjct: 457  aacactagaaactatggagaaaatgattcgctcatttgccatgcctgcagaagacttt-- 400

                                                                        
Query: 3036 cccaccatcaacacctgcgggattctctggctatttctcaaagagtgtgctcgagcgtct 3095
             |||||| |||||||||| ||||| |||||||||||||||||  | || || ||||||||
Sbjct: 399  -ccaccagcaacacctgcaggattttctggctatttctcaaaaggcgttcttgagcgtct 341

                                     
Query: 3096 agtaaatctgtggccttttcataag 3120
             || || || |||||||| ||||||
Sbjct: 340  ggtcaacctttggcctttccataag 316


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,686
Number of Sequences: 8469
Number of extensions: 12686
Number of successful extensions: 3719
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3717
Number of HSP's gapped (non-prelim): 1
length of query: 3144
length of database: 5,164,774
effective HSP length: 17
effective length of query: 3127
effective length of database: 5,020,801
effective search space: 15700044727
effective search space used: 15700044727
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)