Miyakogusa Predicted Gene
- chr1.CM0051.150.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0051.150.nc - phase: 0
(3144 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC016683A_C01 KMC016683A_c01 117 7e-26
>KMC016683A_C01 KMC016683A_c01
Length = 517
Score = 117 bits (59), Expect = 7e-26
Identities = 169/205 (82%), Gaps = 3/205 (1%)
Strand = Plus / Minus
Query: 2916 tcaggagcatacgctgccaattatgggtcctgaaaggctacaagaaataggatcatatct 2975
||||||||| || |||| ||||||||||| || || || ||||||||||||||||||||
Sbjct: 517 tcaggagcacacattgcctattatgggtccagagagactgcaagaaataggatcatatct 458
Query: 2976 cacattgaaaaagatggagaagatggttcgtccatttgctatgcctgcagaagattttcc 3035
||| | ||| |||||||| ||| |||| ||||||| |||||||||||||| |||
Sbjct: 457 aacactagaaactatggagaaaatgattcgctcatttgccatgcctgcagaagacttt-- 400
Query: 3036 cccaccatcaacacctgcgggattctctggctatttctcaaagagtgtgctcgagcgtct 3095
|||||| |||||||||| ||||| ||||||||||||||||| | || || ||||||||
Sbjct: 399 -ccaccagcaacacctgcaggattttctggctatttctcaaaaggcgttcttgagcgtct 341
Query: 3096 agtaaatctgtggccttttcataag 3120
|| || || |||||||| ||||||
Sbjct: 340 ggtcaacctttggcctttccataag 316
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,686
Number of Sequences: 8469
Number of extensions: 12686
Number of successful extensions: 3719
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3717
Number of HSP's gapped (non-prelim): 1
length of query: 3144
length of database: 5,164,774
effective HSP length: 17
effective length of query: 3127
effective length of database: 5,020,801
effective search space: 15700044727
effective search space used: 15700044727
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)