Miyakogusa Predicted Gene
- chr1.CM0029.320.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr1.CM0029.320.nd - phase: 1 /partial
(373 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC137602_12.5 Proteasome component region PCI; Eukaryotic t... 514 e-146
IMGA|AC140549_5.5 Proteasome component region PCI; Eukaryotic tr... 511 e-145
IMGA|AC163385_33.5 Eukaryotic translation initiation factor 3 su... 252 2e-67
IMGA|AC137553_31.4 Eukaryotic translation initiation factor 3 su... 207 7e-54
IMGA|AC155290_13.4 Eukaryotic translation initiation factor 3 su... 100 1e-21
IMGA|AC160957_16.4 Eukaryotic translation initiation factor 3 su... 100 2e-21
IMGA|AC163385_32.5 Proteasome component region PCI chr02_pseudom... 93 2e-19
IMGA|AC136141_83.4 Eukaryotic translation initiation factor 3 su... 78 6e-15
>IMGA|AC137602_12.5 Proteasome component region PCI; Eukaryotic
translation initiation factor 3 subunit 8, C-terminal;
Eukaryotic translation initiation factor 3 subunit 8,
N-terminal chr07_pseudomolecule_IMGAG_V2
32350180-32354375 E EGN_Mt071002 20080227
Length = 936
Score = 514 bits (1325), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/375 (69%), Positives = 283/375 (75%), Gaps = 12/375 (3%)
Query: 1 LCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHI 60
LCAFRVGL+SEAHGCLSELYSGGRVKELLAQGVSQ+RYHEKTPEQERLERRRQMPYHMHI
Sbjct: 571 LCAFRVGLVSEAHGCLSELYSGGRVKELLAQGVSQNRYHEKTPEQERLERRRQMPYHMHI 630
Query: 61 NLELLEAVHLISAMLLEVPNMAANVHDAKRKVISKTFRRLLEVNDKQTFVGPPENVRDHV 120
NLELLE+VHL SAMLLEVPNMAANVHDAKRK+ISK FRRLLEV++KQTF GPPE VRDHV
Sbjct: 631 NLELLESVHLTSAMLLEVPNMAANVHDAKRKIISKNFRRLLEVSEKQTFTGPPETVRDHV 690
Query: 121 MAATRVLSKGDYNKAFEIIVSLDVWKFVKNRDTVLEMLKDKIKEEALRTYLFTFSSSYDS 180
MAATRVL GD+ KAF+II SL+VWKFVKNRDTVLEMLKDKIKEEALRTYLFTFSSSYDS
Sbjct: 691 MAATRVLINGDFQKAFDIIASLEVWKFVKNRDTVLEMLKDKIKEEALRTYLFTFSSSYDS 750
Query: 181 LSVDQLTKIFDLSVPRIHSIVSKMMVNEELHASWDQPSGCIVFQNVELSRLQALTFQLTE 240
LSVDQLT FDLS+PR HSIVS+MM+NEELHASWDQP+GCI+F+NVELSR+QAL FQLTE
Sbjct: 751 LSVDQLTNFFDLSLPRAHSIVSRMMINEELHASWDQPTGCIIFRNVELSRVQALAFQLTE 810
Query: 241 KLSIFAESNERAAEARIXXXXXXXXXXXXXXQDY--XXXXXXXXXXXXXRWQDLSLSQPR 298
KLSI AESNERA+EAR+ QDY RWQDLS SQ R
Sbjct: 811 KLSILAESNERASEARLGGGGLDLPPRRRDGQDYAAAAAGGGGGTSSGGRWQDLSYSQTR 870
Query: 299 QXXXXXXXXXXXXXPFAFNQAAXXXXXXXXXXXXXXXXXXXXXXXXXXRAHQGGSALRGH 358
Q +FNQA QGGSALRG
Sbjct: 871 QGSGRAGYGGRA---LSFNQAGGSGGYSRGRGMGGGGYQNSSRT-------QGGSALRGP 920
Query: 359 HGDGSSRMVSLKGAR 373
HGD S+RMVSL+G R
Sbjct: 921 HGDVSTRMVSLRGVR 935
>IMGA|AC140549_5.5 Proteasome component region PCI; Eukaryotic
translation initiation factor 3 subunit 8, C-terminal;
Eukaryotic translation initiation factor 3 subunit 8,
N-terminal chr02_pseudomolecule_IMGAG_V2 238185-232821 E
EGN_Mt071002 20080227
Length = 935
Score = 511 bits (1317), Expect = e-145, Method: Compositional matrix adjust.
Identities = 260/375 (69%), Positives = 281/375 (74%), Gaps = 11/375 (2%)
Query: 1 LCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHI 60
LCAFRVGL+SEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHI
Sbjct: 569 LCAFRVGLVSEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHI 628
Query: 61 NLELLEAVHLISAMLLEVPNMAANVHDAKRKVISKTFRRLLEVNDKQTFVGPPENVRDHV 120
NLELLE+VHL SAMLLEVPNMAANVHDAKRK+ISK FRRLLEV++KQTF GPPE VRDHV
Sbjct: 629 NLELLESVHLTSAMLLEVPNMAANVHDAKRKIISKNFRRLLEVSEKQTFTGPPETVRDHV 688
Query: 121 MAATRVLSKGDYNKAFEIIVSLDVWKFVKNRDTVLEMLKDKIKEEALRTYLFTFSSSYDS 180
MAATRVL GD+ KAF+II SL+VWKFVKNRDTVLEMLKDKIKEEALRTYLFTFSSSYDS
Sbjct: 689 MAATRVLINGDFQKAFDIIASLEVWKFVKNRDTVLEMLKDKIKEEALRTYLFTFSSSYDS 748
Query: 181 LSVDQLTKIFDLSVPRIHSIVSKMMVNEELHASWDQPSGCIVFQNVELSRLQALTFQLTE 240
LSVDQLT FDLS+PR+HSIVS+MM+NEELHASWDQP+GCI+F+NVE SR+QAL FQLTE
Sbjct: 749 LSVDQLTNFFDLSLPRVHSIVSRMMINEELHASWDQPTGCIIFRNVEHSRVQALAFQLTE 808
Query: 241 KLSIFAESNERAAEARIXXXXXXXXXXXXXXQDY--XXXXXXXXXXXXXRWQDLSLSQPR 298
KLSI AESNERA EAR+ QDY RWQDLS SQ R
Sbjct: 809 KLSILAESNERATEARLGGGGLDLPPRRRDGQDYAAAAAGGGSGTSSGGRWQDLSYSQTR 868
Query: 299 QXXXXXXXXXXXXXPFAFNQAAXXXXXXXXXXXXXXXXXXXXXXXXXXRAHQGGSALRGH 358
Q +F+QA QGGS LRG
Sbjct: 869 QGSGRTGYGGGRA--LSFSQAGGSGGYSRGRGTGGGGYQNSGRT-------QGGSTLRGP 919
Query: 359 HGDGSSRMVSLKGAR 373
HGD S+RMVSL+G R
Sbjct: 920 HGDTSTRMVSLRGVR 934
>IMGA|AC163385_33.5 Eukaryotic translation initiation factor 3
subunit 8, N-terminal chr02_pseudomolecule_IMGAG_V2
13210328-13212077 E EGN_Mt071002 20080227
Length = 209
Score = 252 bits (643), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 118/150 (78%), Positives = 133/150 (88%)
Query: 1 LCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHI 60
LCAFR GLISEAH CLSELY GGRV+ELLAQGV++S YHEKTPEQE LER R MPYHMHI
Sbjct: 60 LCAFRAGLISEAHECLSELYPGGRVRELLAQGVARSCYHEKTPEQELLERSRLMPYHMHI 119
Query: 61 NLELLEAVHLISAMLLEVPNMAANVHDAKRKVISKTFRRLLEVNDKQTFVGPPENVRDHV 120
NLELLE+V+LISAM+LEVPNMAAN+HD KRK+ISK F RLLE++DK+TF GPPENVRDHV
Sbjct: 120 NLELLESVYLISAMVLEVPNMAANIHDTKRKIISKNFHRLLEISDKRTFNGPPENVRDHV 179
Query: 121 MAATRVLSKGDYNKAFEIIVSLDVWKFVKN 150
MA TR+L GD+ KAF+ I SLDVWKFVK+
Sbjct: 180 MAVTRLLINGDFLKAFDNIASLDVWKFVKH 209
>IMGA|AC137553_31.4 Eukaryotic translation initiation factor 3
subunit 8, N-terminal chr06_pseudomolecule_IMGAG_V2
8257322-8259063 H EGN_Mt071002 20080227
Length = 375
Score = 207 bits (526), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 124/256 (48%), Positives = 151/256 (58%), Gaps = 43/256 (16%)
Query: 1 LCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHI 60
LCAF GL+SEAH CLSELY GGR+KELLAQGV++SRYH+KT EQ + + Y H
Sbjct: 109 LCAFPAGLVSEAHDCLSELYFGGRLKELLAQGVARSRYHKKTSEQVGKKPTDAISY-AHK 167
Query: 61 NLELLEAVHLISAMLLEVPNMAANVHDAKRKVISKTFRRLLEVNDKQTFVGPPENVRDHV 120
+L NV D KRK+ISK F LLE++DK+ P+ +
Sbjct: 168 SL----------------ATGITNVPDVKRKIISKNFSHLLEISDKKHSTVLPKMLWIMS 211
Query: 121 MAATRVLSKGDYNKAFEIIVSLDVWKFVKNRDTVLEMLKDKIKEEAL-RTYLFTFSSSYD 179
+ LS + ++ DVWKFVKN+D VLEMLKDK KEEAL TYL TFSSS
Sbjct: 212 WLSQCFLSMETSTRLVTLLHLFDVWKFVKNQDAVLEMLKDKTKEEALITTYLITFSSS-- 269
Query: 180 SLSVDQLTKIFDLSVPRIHSIVSKMMVNEELHASWDQPSGCIVFQNVELSRLQALTFQLT 239
+ ++N+E HA WDQPSGCIVF+NVELS +QAL F+LT
Sbjct: 270 -----------------------RSVMNDEHHARWDQPSGCIVFRNVELSMVQALAFELT 306
Query: 240 EKLSIFAESNERAAEA 255
EKLSI A+SNERA EA
Sbjct: 307 EKLSILAKSNERATEA 322
>IMGA|AC155290_13.4 Eukaryotic translation initiation factor 3
subunit 8, N-terminal chr06_pseudomolecule_IMGAG_V2
7838291-7839133 H EGN_Mt071002 20080227
Length = 130
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 67/102 (65%), Gaps = 20/102 (19%)
Query: 157 MLKDKIKEEAL-RTYLFTFSSSYDSLSVDQLTKIFDLSVPRIHSIVSKMMVNEELHASWD 215
MLKDK KEEAL RTYL TFSSSY+S + ++N E HA WD
Sbjct: 1 MLKDKTKEEALIRTYLITFSSSYESE-------------------CGRSVMNYEHHARWD 41
Query: 216 QPSGCIVFQNVELSRLQALTFQLTEKLSIFAESNERAAEARI 257
QPSGCIVF+NVE S +QAL F+LTEKLSI A+S+ERA EA +
Sbjct: 42 QPSGCIVFRNVEPSMVQALAFELTEKLSILAKSSERATEAWL 83
>IMGA|AC160957_16.4 Eukaryotic translation initiation factor 3
subunit 8, N-terminal chr06_pseudomolecule_IMGAG_V2
7989616-7989150 H EGN_Mt071002 20080227
Length = 134
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 67/102 (65%), Gaps = 20/102 (19%)
Query: 157 MLKDKIKEEAL-RTYLFTFSSSYDSLSVDQLTKIFDLSVPRIHSIVSKMMVNEELHASWD 215
MLKDK KEEAL RTYL TFSSSY+S + ++N E HA WD
Sbjct: 1 MLKDKTKEEALIRTYLITFSSSYESE-------------------CGRSVMNYEHHARWD 41
Query: 216 QPSGCIVFQNVELSRLQALTFQLTEKLSIFAESNERAAEARI 257
QPSGCIVF+NVE S +QAL F+LTEKLSI A+S+ERA EA +
Sbjct: 42 QPSGCIVFRNVEPSMVQALAFELTEKLSILAKSSERATEAWL 83
>IMGA|AC163385_32.5 Proteasome component region PCI
chr02_pseudomolecule_IMGAG_V2 13212079-13212539 H
EGN_Mt071002 20080227
Length = 130
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 50/59 (84%)
Query: 183 VDQLTKIFDLSVPRIHSIVSKMMVNEELHASWDQPSGCIVFQNVELSRLQALTFQLTEK 241
+DQL K FDLS+PRIH IV+K ++N ELHA WDQPSGCIVF+NVE SR+QAL F+LT K
Sbjct: 1 MDQLAKNFDLSLPRIHRIVTKSVMNGELHAGWDQPSGCIVFRNVEHSRVQALAFELTNK 59
>IMGA|AC136141_83.4 Eukaryotic translation initiation factor 3
subunit 8 chr06_pseudomolecule_IMGAG_V2 8361771-8361489
H EGN_Mt071002 20080227
Length = 68
Score = 77.8 bits (190), Expect = 6e-15, Method: Composition-based stats.
Identities = 35/52 (67%), Positives = 42/52 (80%)
Query: 110 VGPPENVRDHVMAATRVLSKGDYNKAFEIIVSLDVWKFVKNRDTVLEMLKDK 161
+G PENV+DHVM TR+L GD +KAF+ I SLDVWKFVK RD++LEMLK K
Sbjct: 11 IGLPENVKDHVMVVTRLLMNGDLHKAFDNIASLDVWKFVKKRDSLLEMLKGK 62