Miyakogusa Predicted Gene

chr1.CM0029.320.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0029.320.nd - phase: 1 /partial
         (373 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56150.1 | Symbols: ATEIF3C-1, EIF3C-1, ATTIF3C1, TIF3C1, EIF...   417   e-117
AT3G22860.1 | Symbols: ATEIF3C-2, EIF3C-2, ATTIF3C2, TIF3C2 | TI...   351   4e-97

>AT3G56150.1 | Symbols: ATEIF3C-1, EIF3C-1, ATTIF3C1, TIF3C1, EIF3C
           | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3) |
           chr3:20844769-20847799 REVERSE
          Length = 900

 Score =  417 bits (1073), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/256 (77%), Positives = 234/256 (91%)

Query: 1   LCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHI 60
           LCAFR G+I+E+H CLSELYSG RV+ELLAQGVSQSRYHEKTPEQER+ERRRQMPYHMH+
Sbjct: 549 LCAFRAGMITESHSCLSELYSGQRVRELLAQGVSQSRYHEKTPEQERMERRRQMPYHMHL 608

Query: 61  NLELLEAVHLISAMLLEVPNMAANVHDAKRKVISKTFRRLLEVNDKQTFVGPPENVRDHV 120
           NLELLEAVHLI AMLLEVPNMAAN HDAKR+VISK FRRLLE++++Q F  PPENVRDHV
Sbjct: 609 NLELLEAVHLICAMLLEVPNMAANSHDAKRRVISKNFRRLLEISERQAFTAPPENVRDHV 668

Query: 121 MAATRVLSKGDYNKAFEIIVSLDVWKFVKNRDTVLEMLKDKIKEEALRTYLFTFSSSYDS 180
           MAATR L+KGD+ KAFE++ SL+VW+ +KNRD++L+M+KD+IKEEALRTYLFT+SSSY+S
Sbjct: 669 MAATRALTKGDFQKAFEVLNSLEVWRLLKNRDSILDMVKDRIKEEALRTYLFTYSSSYES 728

Query: 181 LSVDQLTKIFDLSVPRIHSIVSKMMVNEELHASWDQPSGCIVFQNVELSRLQALTFQLTE 240
           LS+DQL K+FD+S P++HSIVSKMM+NEELHASWDQP+ CIVF  V+ SRLQ+L FQLTE
Sbjct: 729 LSLDQLAKMFDVSEPQVHSIVSKMMINEELHASWDQPTRCIVFHEVQHSRLQSLAFQLTE 788

Query: 241 KLSIFAESNERAAEAR 256
           KLSI AESNERA E+R
Sbjct: 789 KLSILAESNERAMESR 804


>AT3G22860.1 | Symbols: ATEIF3C-2, EIF3C-2, ATTIF3C2, TIF3C2 |
           TIF3C2 (eukaryotic translation initiation factor 3
           subunit C2); translation initiation factor |
           chr3:8090661-8093146 REVERSE
          Length = 800

 Score =  351 bits (901), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 166/257 (64%), Positives = 209/257 (81%), Gaps = 1/257 (0%)

Query: 1   LCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHI 60
           LCAFRVG+I+E+H CLSELYSG RV+ELL QGVSQSR HEKT EQ  +ERR Q+PYHM+I
Sbjct: 502 LCAFRVGMITESHSCLSELYSGNRVRELLGQGVSQSRDHEKTTEQMLMERRTQIPYHMNI 561

Query: 61  NLELLEAVHLISAMLLEVPNMAANVHDAKRKVISKTFRRLLEVNDKQTFVGPPENVRDHV 120
           NLELLEAV+L  AMLLEVPNMAAN HD+K K ISK  +RLLE ++KQ F  PPENVR HV
Sbjct: 562 NLELLEAVYLTCAMLLEVPNMAANSHDSKHKPISKNIQRLLEKSEKQAFTAPPENVRVHV 621

Query: 121 MAATRVLSKGDYNKAFEIIVSLDVWKFVKNRDTVLEMLKDKIKEEALRTYLFTFSSS-YD 179
           +AATR L KG++ +AF ++ SLD+W+  KNRD++L+M+K  I E ALRTYLFT+SSS Y 
Sbjct: 622 IAATRALIKGNFQEAFSVLNSLDIWRLFKNRDSILDMVKASISEVALRTYLFTYSSSCYK 681

Query: 180 SLSVDQLTKIFDLSVPRIHSIVSKMMVNEELHASWDQPSGCIVFQNVELSRLQALTFQLT 239
           SLS+ +L K+FD+S   ++SIVSKMM+N+EL+A+WDQP+ CIVF  V+ +R Q+L FQ+T
Sbjct: 682 SLSLAELAKMFDISESHVYSIVSKMMINKELNATWDQPTQCIVFHEVQHNRAQSLAFQIT 741

Query: 240 EKLSIFAESNERAAEAR 256
           EKL+  AESNE A E++
Sbjct: 742 EKLATLAESNESAMESK 758