Miyakogusa Predicted Gene

chr1.LjT04O06.50.nc
Show Alignment:  

BLASTN 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr1.LjT04O06.50.nc
         (6768 letters)

Database: lotus_EST_unigene 
           20,423 sequences; 9,996,863 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC001310A_C01 KMC001310A_c01                                          60   6e-08
AV776400  MPD098d04_f                                                  50   6e-05
BP051237  SPD090h09_f                                                  48   2e-04
BP064495  GENLf041c01                                                  46   9e-04

>KMC001310A_C01 KMC001310A_c01;
          Length = 714

 Score = 60.0 bits (30), Expect = 6e-08
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 6684 ataggcttaaatactctggaggtccccgaaattgtctcccgtacgaaaataagt 6737
            |||||||||||||||||   |||||| ||||||||  |||||||||||||||||
Sbjct: 110  ataggcttaaatactctaagggtccctgaaattgtgccccgtacgaaaataagt 57


>AV776400  MPD098d04_f;
          Length = 543

 Score = 50.1 bits (25), Expect = 6e-05
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1329 ttagtggatgcttggaaattcttttacaattgatttgagcgagaatcaattatggggaga 1388
            |||||| ||| ||| ||||||||||||||||||||| |  |  ||||||||||| ||| |
Sbjct: 189  ttagtgcatgattgaaaattcttttacaattgattttaaagtcaatcaattatgaggaaa 248

                 
Query: 1389 aactt 1393
            |||||
Sbjct: 249  aactt 253


>BP051237  SPD090h09_f;
          Length = 481

 Score = 48.1 bits (24), Expect = 2e-04
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                
Query: 6686 aggcttaaatactctggaggtccccgaaattgtctcccgtacgaaaataagt 6737
            |||||||||||||||||||||| | | |||||| |  ||||| |||||||||
Sbjct: 110  aggcttaaatactctggaggtctctggaattgtatgacgtacaaaaataagt 161


>BP064495  GENLf041c01;
          Length = 516

 Score = 46.1 bits (23), Expect = 9e-04
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 2528 gagaagataatgattctcatagatacttggcaagaagcttttggagg 2574
            ||||||||| ||||| | || ||||| ||||||||||| ||||||||
Sbjct: 380  gagaagatactgattttaattgatacatggcaagaagcgtttggagg 426