Miyakogusa Predicted Gene

chr3.CM0111.570.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0111.570.nd + phase: 0 
         (109 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g28550.1                                                       118   1e-27
Glyma10g03310.1                                                       118   2e-27
Glyma10g39270.1                                                       114   3e-26
Glyma10g30090.1                                                        82   9e-17
Glyma10g39260.1                                                        62   1e-10

>Glyma20g28550.1
          Length = 256

 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 81/113 (71%), Gaps = 5/113 (4%)

Query: 1   MSQEQPRRGE-REAIKYGDVFNVSGELASKPVMPRDAAMMQSAEDQVLGQIQKGGPAAVM 59
           MSQEQPRR + +  IKYGDVF VSG+LA KPV P DAAMMQSAE +VLGQ Q GG A+VM
Sbjct: 1   MSQEQPRRPKGQNPIKYGDVFVVSGDLAQKPVAPEDAAMMQSAETRVLGQTQPGGAASVM 60

Query: 60  ESAAAKNERAGHVNHQAATKFARNQGVYVSQTD----NGVTETLGGQVIDWFF 108
           +SAA +NE+AG V H+  T    ++GV V++T       +TE +GGQV++ + 
Sbjct: 61  QSAATRNEQAGLVGHRDVTDVTGDRGVTVTETKVPGRRIITEAVGGQVVEQYV 113


>Glyma10g03310.1
          Length = 262

 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/114 (55%), Positives = 81/114 (71%), Gaps = 6/114 (5%)

Query: 1   MSQEQPRR--GEREAIKYGDVFNVSGELASKPVMPRDAAMMQSAEDQVLGQIQKGGPAAV 58
           MSQEQ ++  GE++ IKYGDVF VS ELA KP+ PRDAA+MQ+ E+Q LGQ QKGGPA+V
Sbjct: 1   MSQEQLKKPQGEQDPIKYGDVFKVSDELAFKPIAPRDAALMQATENQALGQTQKGGPASV 60

Query: 59  MESAAAKNERAGHVNHQAATKFARNQGVYVSQTDNG----VTETLGGQVIDWFF 108
           M+SAA +N RAG V  Q  +  ARN+GV V++T  G    +TE +G  V+  F 
Sbjct: 61  MQSAATENLRAGVVGRQDISDVARNEGVSVTETKVGCHRVITEFVGRHVVGQFV 114


>Glyma10g39270.1
          Length = 256

 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 82/113 (72%), Gaps = 5/113 (4%)

Query: 1   MSQEQPRRGE-REAIKYGDVFNVSGELASKPVMPRDAAMMQSAEDQVLGQIQKGGPAAVM 59
           MSQEQPRR + ++ IKYGDVF+V G+LA  P+ P DAAMMQSAE +VLG+ Q GG ++VM
Sbjct: 1   MSQEQPRRPQGQDPIKYGDVFDVYGDLAQMPIAPEDAAMMQSAEARVLGKTQPGGASSVM 60

Query: 60  ESAAAKNERAGHVNHQAATKFARNQGVYVSQTD-NG---VTETLGGQVIDWFF 108
           +SAA +NE+AG V HQ  T    + GV V++T  +G   +TE +GGQV++ + 
Sbjct: 61  QSAATRNEQAGLVGHQDVTDITGDHGVTVTETTFHGRRIITEAVGGQVVEQYV 113


>Glyma10g30090.1
          Length = 284

 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 71/115 (61%), Gaps = 10/115 (8%)

Query: 1   MSQEQPRR--GEREAIKYGDVFNVSGELASKPVMPRDAAMMQSAEDQVLGQIQKGGPAAV 58
           MSQEQP++   E E IKYGDVFNV GE+ SKP  P DA MMQ AE +  G+ QK    A 
Sbjct: 1   MSQEQPQKENHEEEGIKYGDVFNVKGEMKSKPEAPVDAGMMQKAETETTGKTQKA--GAA 58

Query: 59  MESAAAKNERAGHVNHQAATKFARNQGVYVSQTD------NGVTETLGGQVIDWF 107
           M+SAAAKNER G   H+     A + GV V++T+        ++E++ GQV++  
Sbjct: 59  MQSAAAKNERGGMAGHKDKNNVAADGGVSVTETEAHLSGSQVISESVAGQVVNRL 113


>Glyma10g39260.1
          Length = 113

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 38/55 (69%), Gaps = 1/55 (1%)

Query: 1  MSQEQPR-RGEREAIKYGDVFNVSGELASKPVMPRDAAMMQSAEDQVLGQIQKGG 54
          MSQEQPR   +++ IKYGDVF+VSG LA KPV P DAAMMQ    Q + Q   GG
Sbjct: 1  MSQEQPRCPKDQDPIKYGDVFHVSGNLAKKPVAPEDAAMMQRVLAQAVDQSDAGG 55