Miyakogusa Predicted Gene
- chr6.LjT16B20.40.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr6.LjT16B20.40.nc - phase: 0
(478 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC148526_13.4 RNA-binding region RNP-1 (RNA recognition mot... 704 0.0
IMGA|CR955006_36.5 RNA-binding region RNP-1 (RNA recognition mot... 465 e-131
IMGA|AC121232_18.4 RNA-binding region RNP-1 (RNA recognition mot... 451 e-127
IMGA|AC157981_22.5 RNA-binding region RNP-1 (RNA recognition mot... 427 e-120
IMGA|CT030180_20.5 RNA-binding region RNP-1 (RNA recognition mot... 160 1e-39
IMGA|AC144431_42.4 RNA-binding region RNP-1 (RNA recognition mot... 137 1e-32
IMGA|AC131026_44.4 RNA-binding region RNP-1 (RNA recognition mot... 87 1e-17
IMGA|CU459035_17.3 RNA-binding region RNP-1 (RNA recognition mot... 86 5e-17
IMGA|AC145289_29.5 RNA-binding region RNP-1 (RNA recognition mot... 83 2e-16
IMGA|CT009540_36.5 RNA-binding region RNP-1 (RNA recognition mot... 82 7e-16
IMGA|AC150977_25.5 RNA-binding region RNP-1 (RNA recognition mot... 73 3e-13
IMGA|AC149134_50.5 RNA-binding region RNP-1 (RNA recognition mot... 72 6e-13
IMGA|AC146705_26.5 RNA-binding region RNP-1 (RNA recognition mot... 72 7e-13
IMGA|CU024864_17.4 RNA-binding region RNP-1 (RNA recognition mot... 68 1e-11
IMGA|AC150443_40.5 RNA-binding region RNP-1 (RNA recognition mot... 67 2e-11
IMGA|AC134242_17.5 RNA-binding region RNP-1 (RNA recognition mot... 67 2e-11
IMGA|AC134242_14.5 RNA-binding region RNP-1 (RNA recognition mot... 66 3e-11
IMGA|AC135100_25.5 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis... 66 3e-11
IMGA|AC174143_20.4 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis... 66 3e-11
IMGA|AC134242_43.5 RNA-binding region RNP-1 (RNA recognition mot... 65 5e-11
IMGA|AC202362_16.3 RNA-binding region RNP-1 (RNA recognition mot... 63 2e-10
IMGA|AC146330_10.5 RNA-binding region RNP-1 (RNA recognition mot... 62 5e-10
IMGA|AC148486_23.5 Ribosomal protein S2; Polyadenylate binding p... 62 6e-10
IMGA|CU457783_12.3 RNA-binding region RNP-1 (RNA recognition mot... 62 6e-10
IMGA|AC139882_12.5 RNA-binding region RNP-1 (RNA recognition mot... 60 2e-09
IMGA|AC202500_12.4 RNA-binding region RNP-1 (RNA recognition mot... 60 2e-09
IMGA|AC152402_23.4 RNA-binding region RNP-1 (RNA recognition mot... 60 2e-09
IMGA|AC136449_16.5 RNA-binding region RNP-1 (RNA recognition mot... 59 6e-09
IMGA|AC202518_12.3 RNA-binding region RNP-1 (RNA recognition mot... 58 7e-09
IMGA|AC125368_8.5 RNA-binding region RNP-1 (RNA recognition moti... 58 1e-08
IMGA|AC139854_19.4 RNA-binding region RNP-1 (RNA recognition mot... 57 2e-08
IMGA|AC174312_11.5 RNA-binding region RNP-1 (RNA recognition mot... 57 2e-08
IMGA|AC127168_20.5 RNA-binding region RNP-1 (RNA recognition mot... 57 2e-08
IMGA|AC139707_45.4 RNA-binding region RNP-1 (RNA recognition mot... 56 3e-08
IMGA|AC149546_31.4 RNA-binding region RNP-1 (RNA recognition mot... 56 3e-08
IMGA|AC122162_7.4 RNA-binding region RNP-1 (RNA recognition moti... 56 4e-08
IMGA|CU041253_29.4 RNA-binding region RNP-1 (RNA recognition mot... 55 6e-08
IMGA|CT868696_6.4 RNA-binding region RNP-1 (RNA recognition moti... 55 9e-08
IMGA|AC174301_43.4 Polyadenylate binding protein, human types 1,... 54 1e-07
IMGA|AC137522_14.4 RNA-binding region RNP-1 (RNA recognition mot... 54 1e-07
IMGA|CU062643_11.3 RNA-binding region RNP-1 (RNA recognition mot... 54 2e-07
IMGA|AC122728_50.4 Polyadenylate binding protein, human types 1,... 53 2e-07
IMGA|AC157373_30.4 RNA-binding region RNP-1 (RNA recognition mot... 52 4e-07
IMGA|AC140027_27.5 RNA-binding region RNP-1 (RNA recognition mot... 51 9e-07
IMGA|AC146760_9.5 RNA-binding region RNP-1 (RNA recognition moti... 51 1e-06
IMGA|AC149129_30.4 RNA-binding region RNP-1 (RNA recognition mot... 50 2e-06
IMGA|AC129091_32.5 RNA-binding region RNP-1 (RNA recognition mot... 50 2e-06
IMGA|CR962128_15.4 RNA-binding region RNP-1 (RNA recognition mot... 49 4e-06
IMGA|CT963115_17.5 RNA-binding region RNP-1 (RNA recognition mot... 49 4e-06
IMGA|CR962130_8.4 RNA-binding region RNP-1 (RNA recognition moti... 49 6e-06
IMGA|AC135465_37.4 RNA-binding region RNP-1 (RNA recognition mot... 49 7e-06
IMGA|AC161788_24.4 RNA-binding region RNP-1 (RNA recognition mot... 48 8e-06
IMGA|AC124956_60.4 RNA-binding region RNP-1 (RNA recognition mot... 48 8e-06
IMGA|AC126781_4.5 RNA-binding region RNP-1 (RNA recognition moti... 47 2e-05
IMGA|AC150443_41.5 RNA-binding region RNP-1 (RNA recognition mot... 47 2e-05
IMGA|CU234149_15.3 RNA-binding region RNP-1 (RNA recognition mot... 47 2e-05
IMGA|CT010464_26.5 RNA-binding region RNP-1 (RNA recognition mot... 47 2e-05
IMGA|AC187356_26.4 RNA-binding region RNP-1 (RNA recognition mot... 46 3e-05
IMGA|CT033766_5.5 U2 auxiliary factor small subunit chr05_pseudo... 45 8e-05
IMGA|AC121245_41.5 RNA-binding region RNP-1 (RNA recognition mot... 44 1e-04
IMGA|AC202373_19.4 RNA-binding region RNP-1 (RNA recognition mot... 44 1e-04
IMGA|CT961058_24.4 U2 auxiliary factor small subunit chr03_pseud... 44 1e-04
IMGA|AC146704_27.4 RNA-binding region RNP-1 (RNA recognition mot... 44 1e-04
IMGA|AC144459_24.5 RNA-binding region RNP-1 (RNA recognition mot... 44 2e-04
IMGA|CR954196_42.5 Histone-fold; U2 auxiliary factor small subun... 44 2e-04
IMGA|AC203561_5.4 Histone-fold; U2 auxiliary factor small subuni... 43 3e-04
IMGA|CT963106_6.5 Rhodopsin-like GPCR superfamily; RNA-binding r... 43 3e-04
IMGA|AC137701_36.4 RNA-binding region RNP-1 (RNA recognition mot... 43 3e-04
IMGA|AC144483_30.5 RNA-binding region RNP-1 (RNA recognition mot... 43 4e-04
IMGA|AC119413_25.4 RNA-binding region RNP-1 (RNA recognition mot... 42 5e-04
IMGA|AC203559_11.4 RNA-binding region RNP-1 (RNA recognition mot... 42 6e-04
IMGA|AC202369_17.3 RNA-binding region RNP-1 (RNA recognition mot... 42 6e-04
>IMGA|AC148526_13.4 RNA-binding region RNP-1 (RNA recognition motif)
chr02_pseudomolecule_IMGAG_V2 6339165-6343189 E
EGN_Mt071002 20080227
Length = 522
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/483 (74%), Positives = 397/483 (82%), Gaps = 7/483 (1%)
Query: 1 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
MDPGKLFIGGISWDTNE+RLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER
Sbjct: 42 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 101
Query: 61 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
VVMEKHVIDGRTVEAKKAVPRDDQN RTKKIFVGGL ST+TES
Sbjct: 102 VVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTES 161
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 180
DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT+DSEE VEKVL+KTFHELNGKMVEVKR
Sbjct: 162 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKR 221
Query: 181 AVPKELSPSPSRGQLGGYSY-AMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGR 239
AVPK+LSPSPSRGQLGG+SY MSRVGSF+NGF QGYNP ++GGHGLR+DGRLSP VGR
Sbjct: 222 AVPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGR 281
Query: 240 SGYPLLSPNYGSELNFELPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGY-AGSS 298
SGY L SP+YG+ LNFE PL+QNE+ NFTSNF++GRAL+S Y+ SPSRYNNAM Y AGS+
Sbjct: 282 SGYSLFSPSYGTGLNFEPPLNQNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGSN 341
Query: 299 IGNNATISSSSINQNLWGNGNLYGATNPATSNAFVGYGSENXXX-XXXXXXXXXXXXXXX 357
+GN++ ISS+ NQ+LWGNGNL A NPA+S+AF+GYGSEN
Sbjct: 342 VGNSSAISST--NQSLWGNGNLNYANNPASSDAFLGYGSENSSIGSFGNIGSLWSTSVGA 399
Query: 358 NNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSSESTVASAPLYTLSNGNYDEAFKDT 417
NQAGTIGSGYGK SL+YR GDVILGSK V YG++SES V S Y SNG+Y EA+K T
Sbjct: 400 ANQAGTIGSGYGKSSLNYRLGDVILGSKAVGYGKNSESNVESDSSYAFSNGSYGEAYKST 459
Query: 418 YEAGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSK-GSGGHIGAY-AVASRQSNRG 475
+EAGPFY+D TWR + SEL+DSG L G ENAVSDLM K S GHIGAY AVA+RQSNRG
Sbjct: 460 FEAGPFYQDHTWRPTTSELEDSGPLSFGLENAVSDLMRKSSSSGHIGAYAAVANRQSNRG 519
Query: 476 IAA 478
IAA
Sbjct: 520 IAA 522
>IMGA|CR955006_36.5 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 36065353-36070155 E
EGN_Mt071002 20080227
Length = 479
Score = 465 bits (1196), Expect = e-131, Method: Compositional matrix adjust.
Identities = 270/478 (56%), Positives = 313/478 (65%), Gaps = 7/478 (1%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
D GKLFIGGISWDTNEERLR+YF +G+V EAVIMKDRTTGRARGFGFVVF DP+VA+ V
Sbjct: 4 DSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIV 63
Query: 62 VMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 121
V EKH IDGR VEAKKAVPRDDQN RT+KIFVGGL ST+TESD
Sbjct: 64 VQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPG--RTRKIFVGGLASTVTESD 121
Query: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 181
FK YFDQFGTITDVVVMYDHNTQRPRGFGFIT+DSEE V++VL KTFHELNGKMVEVKRA
Sbjct: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRA 181
Query: 182 VPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGRSG 241
VPKELSP P+R L GY+Y +SRV SF NGF Q Y+P VGG+GLR+DGR SPV GR+
Sbjct: 182 VPKELSPGPARSPLSGYNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGGRNA 241
Query: 242 YPLLSPNYGSELNFELPLSQ--NESANFTSNFVIGRALNSSYNGSPSRYNNAMGYAGSSI 299
Y YG +NFE LS +A+F N GR LN + G +R+ + +GY +
Sbjct: 242 YAPFGSGYGMGMNFEPGLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYESGNG 301
Query: 300 GNNATISSSSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXXXXXXXXXXXXNN 359
G+N+ SS+ +NLWGNG+L T+ A SNA++G GS N +
Sbjct: 302 GSNSFF--SSVTRNLWGNGSLNYGTSSANSNAYIGSGSGNVGGNAFGNTGVNWSSSPISG 359
Query: 360 QAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSSESTVASAPLYTLSN-GNYDEAFKDTY 418
G G G+L Y G+ G T YGRSS ST+A Y+ SN G D AF D Y
Sbjct: 360 HGGGNNVSQGSGNLGYGGGNNGYGLGTEGYGRSSGSTLAPTSSYSTSNGGGVDGAFADFY 419
Query: 419 EAGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSKGSGGHIGAYAVASRQSNRGI 476
Y D TWRSS SE D SG G G A SD+ +K S G++G Y V RQ NRGI
Sbjct: 420 NNNSVYGDTTWRSSNSERDGSGPFGYGLGGAPSDVSAKTSPGYVGGYTVNKRQPNRGI 477
>IMGA|AC121232_18.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 12513934-12509664 E
EGN_Mt071002 20080227
Length = 506
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 261/484 (53%), Positives = 321/484 (66%), Gaps = 13/484 (2%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
D GKLFIGGISWDT+EERL++YF +G+V+EAVIM+DR TGRARGFGFVVF+DP+VAERV
Sbjct: 29 DLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERV 88
Query: 62 VMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 121
+++KH+IDGRTVEAKKAVPRDDQ RTKKIFVGGLPSTITESD
Sbjct: 89 IIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPG--RTKKIFVGGLPSTITESD 146
Query: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 181
FK YFDQFGTITDVVVMYDHNTQRPRGFGFIT+DSEE V++VLYKTFHELNGKMVEVKRA
Sbjct: 147 FKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRA 206
Query: 182 VPKELSPSPSRGQLGGY-SYAM-SRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGR 239
VPKELSP P+R L GY +Y++ SR S+ N + QGY+ +GG G+R+DGR SP+T GR
Sbjct: 207 VPKELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQGYSMSPIGGFGVRMDGRFSPLTGGR 266
Query: 240 SGY-PLLSPNYGSELNFELPLSQN--ESANFTSNFVIGRALNSSYNGSPSRYNNAMGYAG 296
+G+ P + YG +N E LS N ++NF +N GR + Y+G+ SRY +GY G
Sbjct: 267 TGFTPFGNTGYGMGMNLESGLSPNFGGNSNFGNNLGYGRIFSPFYSGNSSRYATPIGYNG 326
Query: 297 SSIGNNATISSSSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXXXXXXXXXXX 356
+ ++ ++S+S +N+WGNG L A NP + AF+G G
Sbjct: 327 GNGRGDSLMNSTS--RNVWGNGGLSNANNPVSPGAFLGSGG--GAFGVSIGNSGTNWGAA 382
Query: 357 XNNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSSESTVASAPLYTLSNGNYDEAFKD 416
Q G SGY G+ Y GD G V YGR+S + + + S G YD ++ D
Sbjct: 383 IQGQGGGAASGYATGNNVYEGGDSSFGLGGVGYGRNSNAVANPSSTFNASAGGYDGSYGD 442
Query: 417 TYE--AGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSKGSGGHIGAYAVASRQSNR 474
Y +G Y D WRS+ SE+D SGS G SD K S G+IG+Y VASRQ NR
Sbjct: 443 LYRSGSGSVYNDSAWRSATSEIDGSGSFSYGLGGIASDDPVKTSEGYIGSYNVASRQPNR 502
Query: 475 GIAA 478
GIAA
Sbjct: 503 GIAA 506
>IMGA|AC157981_22.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 38680301-38682192 E
EGN_Mt071002 20080227
Length = 476
Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust.
Identities = 252/462 (54%), Positives = 297/462 (64%), Gaps = 7/462 (1%)
Query: 17 EERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAK 76
++ LR+YF +G+V EAVIMKDRTTGRARGFGFVVF DP+VA+ VV EKH IDGR VEAK
Sbjct: 2 KDGLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEKHNIDGRMVEAK 61
Query: 77 KAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNYFDQFGTITDVV 136
KAVPRDDQN RT+KIFVGGL ST+TESDFK YFDQFGTITDVV
Sbjct: 62 KAVPRDDQNVLSRTSGSIHGSPGPG--RTRKIFVGGLASTVTESDFKKYFDQFGTITDVV 119
Query: 137 VMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAVPKELSPSPSRGQLG 196
VMYDHNTQRPRGFGFIT+DSEE V++VL KTFHELNGKMVEVKRAVPKELSP P+R L
Sbjct: 120 VMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPARSPLS 179
Query: 197 GYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGRSGYPLLSPNYGSELNFE 256
GY+Y +SRV SF NGF Q Y+P VGG+GLR+DGR SPV GR+ Y YG +NFE
Sbjct: 180 GYNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGGRNAYAPFGSGYGMGMNFE 239
Query: 257 LPLSQ--NESANFTSNFVIGRALNSSYNGSPSRYNNAMGYAGSSIGNNATISSSSINQNL 314
LS +A+F N GR LN + G +R+ + +GY + G+N+ SS+ +NL
Sbjct: 240 PGLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYESGNGGSNSFF--SSVTRNL 297
Query: 315 WGNGNLYGATNPATSNAFVGYGSENXXXXXXXXXXXXXXXXXXNNQAGTIGSGYGKGSLS 374
WGNG+L T+ A SNA++G GS N + G G G+L
Sbjct: 298 WGNGSLNYGTSSANSNAYIGSGSGNVGGNAFGNTGVNWSSSPISGHGGGNNVSQGSGNLG 357
Query: 375 YRSGDVILGSKTVDYGRSSESTVASAPLYTLSN-GNYDEAFKDTYEAGPFYRDQTWRSSA 433
Y G+ G T YGRSS ST+A Y+ SN G D AF D Y Y D TWRSS
Sbjct: 358 YGGGNNGYGLGTEGYGRSSGSTLAPTSSYSTSNGGGVDGAFADFYNNNSVYGDTTWRSSN 417
Query: 434 SELDDSGSLGLGFENAVSDLMSKGSGGHIGAYAVASRQSNRG 475
SE D SG G G A SD+ +K S G++G Y V RQ NRG
Sbjct: 418 SERDGSGPFGYGLGGAPSDVSAKTSPGYVGGYTVNKRQPNRG 459
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++ E ++YF FG + + V+M D T R RGFGF+ + ++V+++
Sbjct: 90 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLK 149
Query: 65 K-HVIDGRTVEAKKAVPRD 82
H ++G+ VE K+AVP++
Sbjct: 150 TFHELNGKMVEVKRAVPKE 168
>IMGA|CT030180_20.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 22195567-22197506 E
EGN_Mt071002 20080227
Length = 352
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 134/224 (59%), Gaps = 16/224 (7%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
PGK+FIGG++ DT E +YF+ +G++ ++VIMKDR TGR RGFGF+ +AD SV ++V+
Sbjct: 17 PGKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVI 76
Query: 63 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 122
E H+I+ + VE K+ +P+ +TKKIFVGG+P+T++E +
Sbjct: 77 QENHIINDKQVEIKRTIPK--------------GASQTNDFKTKKIFVGGIPATVSEDEL 122
Query: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK-TFHELNGKMVEVKRA 181
K +F + G + + ++ DH T+R RGFGF+ FDS++ V+ +L +++ VE+K+A
Sbjct: 123 KIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKA 182
Query: 182 VPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHG 225
PK+ S S S G S A S G F GF Y GG+G
Sbjct: 183 EPKKSSNSSSFPSFGSDSRARSYNGGFG-GFDDSYGSFPGGGYG 225
>IMGA|AC144431_42.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 6167334-6172171 E
EGN_Mt071002 20080227
Length = 399
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 117/202 (57%), Gaps = 19/202 (9%)
Query: 1 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
M+ KL + GI WD + E L++Y +G++ + ++MK+R+TGR+RGFG+V FA A+
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 61 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
V+ +HV+ R +E K A P+++ + +IFV +P ++TE
Sbjct: 61 VLSGEHVLGDRMLEVKVATPKEEMR--------------APAKKVTRIFVARIPPSVTEE 106
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 180
F+++F+++G ITD+ + D ++ RG GFITF + E VE ++ +T HEL G V V R
Sbjct: 107 TFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDR 165
Query: 181 AVPK----ELSPSPSRGQLGGY 198
A PK ++ P+ Q GGY
Sbjct: 166 ATPKAREDDVKPTGRMSQGGGY 187
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 86/212 (40%), Gaps = 34/212 (16%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
++F+ I EE R +F+ +GD+ + + KD+ + RG GF+ F + E ++ E
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 65 KH-------VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXR------------- 104
H V+D T +A++ + R
Sbjct: 153 THELGGSAVVVDRATPKAREDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHP 212
Query: 105 -------------TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 151
+KKIFVG LP D + YF +FG I DV + D RGFGF
Sbjct: 213 GPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGF 272
Query: 152 ITFDSEEGVEKVLYKTFHELNGKMVEVKRAVP 183
+TF ++EGV + HE+ G V + A P
Sbjct: 273 VTF-ADEGVADRVSLRPHEICGHEVAIDSATP 303
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 44/79 (55%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+G + + N E LRQYF FG + + I +D RGFGFV FAD VA+RV +
Sbjct: 228 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 287
Query: 65 KHVIDGRTVEAKKAVPRDD 83
H I G V A P DD
Sbjct: 288 PHEICGHEVAIDSATPVDD 306
>IMGA|AC131026_44.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 32295786-32291333 E
EGN_Mt071002 20080227
Length = 281
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++W+T E +R+YF+ FGD++EAV++ D+ TGR++G+GFV F DP A R +
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 65 K-HVIDGRTVEAKKA 78
VIDGR A
Sbjct: 90 PSPVIDGRRANCNLA 104
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 27/134 (20%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+TF E +
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 167 TFHELNGKMV------------------EVKRAVPKELSPSPSRGQ-LGGYSYAMSRVGS 207
++G+ V+ A P S P+RG +GGY Y
Sbjct: 90 PSPVIDGRRANCNLASHGRPRGPPISYGRVRPASPYVGSLQPARGAYVGGYGYQQP---- 145
Query: 208 FANGFTQGYNPGMV 221
+ GY GMV
Sbjct: 146 ----LSYGYQQGMV 155
>IMGA|CU459035_17.3 RNA-binding region RNP-1 (RNA recognition
motif) chr05_pseudomolecule_IMGAG_V2 21553444-21558849
F EGN_Mt071002 20080227
Length = 283
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++W+T + +R YF+ FGD++EAVI+ D+ TG+++G+GFV F DP A R +
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAD 76
Query: 65 KH-VIDGR 71
+ VIDGR
Sbjct: 77 PNPVIDGR 84
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
K+FVGGL + + YF+QFG I + V++ D NT + +G+GF+TF E +
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRAC 74
>IMGA|AC145289_29.5 RNA-binding region RNP-1 (RNA recognition
motif) chr04_pseudomolecule_IMGAG_V2 13200806-13192265
E EGN_Mt071002 20080227
Length = 272
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++W+T +E +++YF+ FG+++EAV++ D+ TGR++G+GFV F +P A R ++
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 65 -KHVIDGRTVEAKKA 78
+IDGR A
Sbjct: 77 AAPIIDGRRANCNLA 91
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K+FVGGL + K YF+QFG I + VV+ D T R +G+GF+TF + +
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 167 TFHELNGKMVEVKRAVPKELSPSPSRGQLGGYSYAMSRVGSFANGF 212
++G+ A PS + GG + +GSF GF
Sbjct: 77 AAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNIRVMGSFQTGF 122
>IMGA|CT009540_36.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 33868874-33866998 H
EGN_Mt071002 20080227
Length = 251
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++W+T + L++YF FGD++EAV++ DRTTG+++G+GFV F DP+ A
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 65 KH-VIDGRTVEAKKAVPRDD 83
+ +IDGR A + D
Sbjct: 87 PNPMIDGRRANCNLAYQKPD 106
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF 154
KIFVGGL K YFDQFG I + VV+ D T + +G+GF+TF
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF 74
>IMGA|AC150977_25.5 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 14333004-14330524 F
EGN_Mt071002 20080227
Length = 280
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF--ADPSVAERVV 62
+LF+G + + + +L + F+N GDV ++ D++TGR+RGFGFV A A
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 63 MEKHVIDGRTVEAKKAVP--------RDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLP 114
+ +V+DGR + P R +N ++ VG L
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLA 204
Query: 115 STITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFH--ELN 172
+ ++ F + G + + V+YD + R RGFGF+TF S + V+ + +T +LN
Sbjct: 205 WGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI-RTLDGADLN 263
Query: 173 GKMVEVKRA 181
G+ + V A
Sbjct: 264 GRAIRVSPA 272
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 106 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF 154
+++FVG LP ++ + F+ G + V V+YD +T R RGFGF+T
Sbjct: 84 QRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTM 132
>IMGA|AC149134_50.5 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 23568765-23563374 E
EGN_Mt071002 20080227
Length = 486
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 1/179 (0%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+ G+ WDT L F +G++ + + D+ +G+++G+GF++F S A + E
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 65 -KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
+ I R + A Q +KI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAV 182
+F +FG I + + D T +P+GF + S E + L + E G ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 106 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY 165
+KIFV GL T + N F Q+G I D + D + + +G+GFI F G L
Sbjct: 127 RKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALK 186
Query: 166 KTFHELNGKMVEVKRA 181
+ ++ +M + A
Sbjct: 187 EPQKKIGNRMTACQLA 202
>IMGA|AC146705_26.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 23207650-23209533 F
EGN_Mt071002 20080227
Length = 146
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 1 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF-ADPSVAE 59
M KLFIGG+S++ +++ LR F +GDVVEA ++ DR TGR+RGFGFV F ++ S
Sbjct: 33 MSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATS 92
Query: 60 RVVMEKHVIDGRTVEAKKAVPR 81
+ M+ ++GR + A R
Sbjct: 93 ALSMDGQDLNGRNIRVSYANDR 114
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+ K+F+GGL + + ++ F +G + + V+ D T R RGFGF+ F SEE L
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
Query: 165 YKTFHELNGKMVEVKRAVPKE 185
+LNG+ + V A ++
Sbjct: 95 SMDGQDLNGRNIRVSYANDRQ 115
>IMGA|CU024864_17.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 25794794-25795821 H
EGN_Mt071002 20080227
Length = 135
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
KLF+GG+SW +E+ L+ F +FGDV E I+ D+ +GRARGFGFV+F++ A+
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSA--- 93
Query: 65 KHVIDGRTV 73
K +DG+ +
Sbjct: 94 KDAMDGKAL 102
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVE 161
K+FVGGL ++ E K+ F FG +T+V ++YD ++ R RGFGF+ F +E+ +
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAK 91
>IMGA|AC150443_40.5 RNA-binding region RNP-1 (RNA recognition
motif); Calcium-binding EF-hand
chr07_pseudomolecule_IMGAG_V2 32027929-32025407 E
EGN_Mt071002 20080227
Length = 284
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 30/155 (19%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
++FIGG+ DT+++ +R+ + GD+VE ++KDR TG ++G+ FV + VA++ + +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 65 KH--VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTK-KIFVGGLPSTITESD 121
H G+T+ TK ++F+G +P T TE +
Sbjct: 165 IHNKEFKGKTLRC-------------------------LLSETKHRLFIGNIPKTWTEDE 199
Query: 122 FKNYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITF 154
F+ + G + + ++ D N R RGF F+ +
Sbjct: 200 FRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>IMGA|AC134242_17.5 RNA-binding region RNP-1 (RNA recognition
motif) chr04_pseudomolecule_IMGAG_V2 19467865-19466799
F EGN_Mt071002 20080227
Length = 164
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
+ F+GG++W T+ E L + F +G+++++ I+ DR TGR+RGFGFV FAD +
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 63 MEKHVIDGRTVEAKKA 78
M +DGR + +A
Sbjct: 69 MNGQDMDGRNITVNEA 84
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY- 165
+ FVGGL + F Q+G I D ++ D T R RGFGF+TF E+ + +
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 166 KTFHELNGKMVEVKRA 181
+++G+ + V A
Sbjct: 69 MNGQDMDGRNITVNEA 84
>IMGA|AC134242_14.5 RNA-binding region RNP-1 (RNA recognition
motif) chr04_pseudomolecule_IMGAG_V2 19485092-19483974
E EGN_Mt071002 20080227
Length = 190
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
+ F+GG++W T+ + L Q F FG++ ++ ++ DR TGR+RGFGFV FA+ +
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 63 MEKHVIDGRTVEAKKA 78
M IDGR + +A
Sbjct: 69 MNGQDIDGRNITVNEA 84
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
+ FVGGL + F +FG ITD V+ D T R RGFGF+TF EK +
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTF----AEEKSMRD 64
Query: 167 TFHELNGKMVE 177
E+NG+ ++
Sbjct: 65 AIEEMNGQDID 75
>IMGA|AC135100_25.5 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis
antigen chr08_pseudomolecule_IMGAG_V2 29868882-29857777
E EGN_Mt071002 20080227
Length = 735
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE---RV 61
KLF+G + EE +R F+ G+VVE ++KDR TG+ +G F+ +A A+ R
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 148
Query: 62 VMEKHVIDGRT--VEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 119
+ +H + G ++ + A D + K+FVG L +
Sbjct: 149 LHNRHTLPGGVGPIQVRYA---DGERERLGAVEY-------------KLFVGSLNKQASV 192
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF 154
+ + F ++G I DV +M D Q RG GF+ +
Sbjct: 193 KEVEEVFSKYGRIEDVYLMRDDQKQS-RGCGFVKY 226
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
K+FVG +P T TE D + F++ G + +V ++ D T + +G FI + + E ++ +
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAI 146
>IMGA|AC174143_20.4 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis
antigen chr08_pseudomolecule_IMGAG_V2 29672130-29683222
E EGN_Mt071002 20080227
Length = 735
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE---RV 61
KLF+G + EE +R F+ G+VVE ++KDR TG+ +G F+ +A A+ R
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 148
Query: 62 VMEKHVIDGRT--VEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 119
+ +H + G ++ + A D + K+FVG L +
Sbjct: 149 LHNRHTLPGGVGPIQVRYA---DGERERLGAVEY-------------KLFVGSLNKQASV 192
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF 154
+ + F ++G I DV +M D Q RG GF+ +
Sbjct: 193 KEVEEVFSKYGRIEDVYLMRDDQKQS-RGCGFVKY 226
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
K+FVG +P T TE D + F++ G + +V ++ D T + +G FI + + E ++ +
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAI 146
>IMGA|AC134242_43.5 RNA-binding region RNP-1 (RNA recognition
motif) chr04_pseudomolecule_IMGAG_V2 19512181-19511124
F EGN_Mt071002 20080227
Length = 161
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
+ F+GG++W T+ E L + F +G++V++ I+ DR TGR+RGFGFV FA+ +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 63 MEKHVIDGRTVEAKKA 78
M +DGR + +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
+ FVGGL + F Q+G I D ++ D T R RGFGF+TF +E+ + +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 167 TF-HELNGKMVEVKRA 181
+L+G+ + V +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>IMGA|AC202362_16.3 RNA-binding region RNP-1 (RNA recognition
motif); Calcium-binding EF-hand
chr01_pseudomolecule_IMGAG_V2 218619-221289 E
EGN_Mt071002 20080227
Length = 311
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 4/179 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+LF+G + + + +L Q F G+VV I+ D T R+RGF FV + AE +
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAI-- 166
Query: 65 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 124
+ DG TV + + KI+ G L +T +
Sbjct: 167 -RMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTF-HELNGKMVEVKRAV 182
F + + V+Y+ N + RG+GF++F++ E VE L E+ G+ + +K AV
Sbjct: 226 AFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAV 284
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 104 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV 163
+++++FVG LP +++ S F + G + V ++YD T R RGF F+T + E E+
Sbjct: 106 QSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEA 165
Query: 164 L 164
+
Sbjct: 166 I 166
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
P K++ G + WD + LR+ F ++ A ++ +R G++RG+GFV F E +
Sbjct: 206 PHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVAL 265
Query: 63 --MEKHVIDGRTVEAKKAV 79
M + GR + K AV
Sbjct: 266 SAMNGVEVQGRPLRLKLAV 284
>IMGA|AC146330_10.5 RNA-binding region RNP-1 (RNA recognition motif)
chr02_pseudomolecule_IMGAG_V2 23524883-23519252 F
EGN_Mt071002 20080227
Length = 428
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 19/188 (10%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
L+IG + + +E L F + G+V+ I++++ TG+ G+GF+ F S AERV+
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVL--- 73
Query: 66 HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNY 125
+G +P +Q IFVG L +T+ +
Sbjct: 74 QTYNG------TQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQET 127
Query: 126 F-DQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNG-----KMVEVK 179
F +G++ V+ D NT R +G+GF+ F E + + E+NG + + +
Sbjct: 128 FRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAM----SEMNGVYCSTRPMRIS 183
Query: 180 RAVPKELS 187
A PK+ +
Sbjct: 184 AATPKKTT 191
>IMGA|AC148486_23.5 Ribosomal protein S2; Polyadenylate binding
protein, human types 1, 2, 3, 4
chr01_pseudomolecule_IMGAG_V2 6658115-6663331 F
EGN_Mt071002 20080227
Length = 647
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 15/180 (8%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
+++ +S E+ L+ F +G + AV+M+D GR++ FGFV F + A + V
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGFVNFENAEDAAKAV--- 268
Query: 66 HVIDGRTVEAK-----KAVPRDDQNXXXX-XXXXXXXXXXXXXXRTKKIFVGGLPSTITE 119
++G+ V+ K KA + ++ + +++ L +IT+
Sbjct: 269 EALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITD 328
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 179
K F +FGTIT +M D N RG GF+ F + E + L E+NGKM+ K
Sbjct: 329 EKLKEMFSEFGTITSYKIMRDPNGVS-RGSGFVAFSTPEEASRAL----GEMNGKMIVSK 383
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
+FI + + + L F +FG ++ I D +G+++G+GFV F A+ + +
Sbjct: 122 IFIKNLDKTIDHKALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 64 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
+I+ + V + + D++ + ++V L + TE D K
Sbjct: 181 NGMLINDKQVFVGHFLRKQDRDNVLSKT------------KFNNVYVKNLSESFTEDDLK 228
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 179
N F +GTIT V+M D + R + FGF+ F++ E K + LNGK V+ K
Sbjct: 229 NEFGAYGTITSAVLMRDADG-RSKCFGFVNFENAEDAAKAV----EALNGKKVDDK 279
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 19/176 (10%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
L++G + + N+ +L F G VV + +D T R+ G+G+V F +P A
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDA------- 86
Query: 66 HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNY 125
R ++ P ++++ T IF+ L TI +
Sbjct: 87 ----ARALDVLNFTPMNNKSIRVMYSHRDPSSRKSG---TANIFIKNLDKTIDHKALHDT 139
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 181
F FG I + D + Q +G+GF+ F++E+ + + K LNG ++ K+
Sbjct: 140 FSSFGQIMSCKIATDGSGQS-KGYGFVQFEAEDSAQNAIDK----LNGMLINDKQV 190
>IMGA|CU457783_12.3 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 29353518-29349911 E
EGN_Mt071002 20080227
Length = 420
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 94/248 (37%), Gaps = 26/248 (10%)
Query: 6 LFIGGISWDTNEERLRQYFQN-FGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+F+G ++ D + L + F + + V A ++ D TGR++G+GFV F D + + E
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 65 KH--VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 122
+ R + A PR IFVGGL + T D
Sbjct: 249 MNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAEDL 308
Query: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAV 182
+ F Q+G I V + +G GF+ F + E+ L K LNG V K+ V
Sbjct: 309 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTVG-KQTV 357
Query: 183 PKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGRSGY 242
+P+ Q S GS NG P GG G P +S Y
Sbjct: 358 RLSWGRNPANKQF------RSEFGSPWNG------PAYYGGPAYDGYGYAMPHPYDQSMY 405
Query: 243 PLLSPNYG 250
P YG
Sbjct: 406 AAAYPMYG 413
>IMGA|AC139882_12.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 15467244-15472639 E
EGN_Mt071002 20080227
Length = 379
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 7 FIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKH 66
++G + +EE L + F G VV + KDR T + +G+GFV F A+ + +
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 67 VID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 124
+I G+ + KA +D ++ +F+G L + E +
Sbjct: 88 MIKLYGKPIRVNKAS-QDKKSLDVGA----------------NLFIGNLDPDVDEKLLYD 130
Query: 125 YFDQFGTI-TDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
F FG I T+ +M D +T RGFGFI++DS E + +
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 171
>IMGA|AC202500_12.4 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 34397955-34393689 F
EGN_Mt071002 20080227
Length = 411
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 19/178 (10%)
Query: 6 LFIGGISWDTNEERLRQYFQN-FGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+F+G ++ D ++ L + F+ + V A ++ DRTTGR +G+GFV FAD S R + E
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 65 KH--VIDGRTVEAKKAVPRD--DQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
+ R + A ++ Q IFVG L +T+
Sbjct: 229 MQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDE 288
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRG--FGFITFDSEEGVEKVLYKTFHELNGKMV 176
K F Q+G + V + P G GF+ F E+ L LNG ++
Sbjct: 289 HLKQVFTQYGELVHVKI--------PSGKRCGFVQFADRSSAEEAL----RVLNGTLL 334
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 82/188 (43%), Gaps = 17/188 (9%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
L+IG + + +E L F + G+V +++++ T ++ G+GF+ F + AERV+
Sbjct: 76 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVL--- 132
Query: 66 HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNY 125
+G +P QN IFVG L + +++
Sbjct: 133 QTFNG------TIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEV 186
Query: 126 F-DQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAVPK 184
F ++ ++ V+ D T R +G+GF+ F E E++ + E+ G + + P
Sbjct: 187 FRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADES--EQM--RAMTEMQGVLCSTR---PM 239
Query: 185 ELSPSPSR 192
+ P+ ++
Sbjct: 240 RIGPASNK 247
>IMGA|AC152402_23.4 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 34279564-34283829 F
EGN_Mt071002 20080227
Length = 411
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 19/178 (10%)
Query: 6 LFIGGISWDTNEERLRQYFQN-FGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+F+G ++ D ++ L + F+ + V A ++ DRTTGR +G+GFV FAD S R + E
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 65 KH--VIDGRTVEAKKAVPRD--DQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
+ R + A ++ Q IFVG L +T+
Sbjct: 229 MQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDE 288
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRG--FGFITFDSEEGVEKVLYKTFHELNGKMV 176
K F Q+G + V + P G GF+ F E+ L LNG ++
Sbjct: 289 HLKQVFTQYGELVHVKI--------PSGKRCGFVQFADRSSAEEAL----RVLNGTLL 334
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 82/188 (43%), Gaps = 17/188 (9%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
L+IG + + +E L F + G+V +++++ T ++ G+GF+ F + AERV+
Sbjct: 76 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVL--- 132
Query: 66 HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNY 125
+G +P QN IFVG L + +++
Sbjct: 133 QTFNG------TIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEV 186
Query: 126 F-DQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAVPK 184
F ++ ++ V+ D T R +G+GF+ F E E++ + E+ G + + P
Sbjct: 187 FRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADES--EQM--RAMTEMQGVLCSTR---PM 239
Query: 185 ELSPSPSR 192
+ P+ ++
Sbjct: 240 RIGPASNK 247
>IMGA|AC136449_16.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 29317773-29312110 F
EGN_Mt071002 20080227
Length = 654
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 23/178 (12%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV--VM 63
L++G + + + +L F G VV + +D TT R+ G+G+V +++P A R V+
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 64 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
++ R + + RD IF+ L I
Sbjct: 96 NFTPLNNRPIRIMYSH-RD---------------PSIRKSGQGNIFIKNLDKAIDHKALH 139
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 181
+ F FG I V D + Q +G+GF+ FD+EE +K + K LNG ++ K+
Sbjct: 140 DTFSSFGNILSCKVAVDGSGQS-KGYGFVQFDTEEAAQKAIEK----LNGMLLNDKQV 192
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 16/176 (9%)
Query: 4 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 63
G +FI + + + L F +FG+++ + D +G+++G+GFV F A++ +
Sbjct: 122 GNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAI- 179
Query: 64 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
EK ++G + D Q + +FV L + T+ + K
Sbjct: 180 EK--LNGMLLN-------DKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELK 230
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 179
F +FGTIT VVM D + + + FGF+ F+S + + + LNGK ++ K
Sbjct: 231 KTFGEFGTITSAVVMRDGDG-KSKCFGFVNFESTDDAARAV----EALNGKKIDDK 281
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
L++ + +E+L++ F ++G + +M+D G +RG GFV F+ P A R ++E
Sbjct: 318 LYVKNLDDSIADEKLKELFSSYGTITSCKVMRD-PNGVSRGSGFVAFSTPEEASRALLE- 375
Query: 66 HVIDGRTVEAK 76
++G+ V +K
Sbjct: 376 --MNGKMVASK 384
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
T ++VG L +T+S + F+Q G + V V D T+R G+G++ + + + + L
Sbjct: 33 TTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARAL 92
Query: 165 -YKTFHELNGKMVEV 178
F LN + + +
Sbjct: 93 DVLNFTPLNNRPIRI 107
>IMGA|AC202518_12.3 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 16448553-16449568 E
EGN_Mt071002 20080227
Length = 112
Score = 58.2 bits (139), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
KLFI G+S++TNE LR F+ G ++E ++ + TG ++G+GFV F + A E
Sbjct: 34 KLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKE 93
Query: 65 KH--VIDGRTVEAKKA 78
H ++DGR + A
Sbjct: 94 LHGQIVDGRRIRVGYA 109
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+ K+F+ GL E+ ++ F+Q G I +V V+ +H T +G+GF+ F+SE
Sbjct: 32 STKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATAR 91
Query: 165 YKTFHELNGKMVEVKR 180
EL+G++V+ +R
Sbjct: 92 ----KELHGQIVDGRR 103
>IMGA|AC125368_8.5 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 26182639-26180185 F
EGN_Mt071002 20080227
Length = 141
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
KLFI G+S T +E+L + F FG ++EA ++ DR +GR++GF FV ++ AE+
Sbjct: 36 KLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREG 95
Query: 63 MEKHVIDGRTVEAKKAVPRDDQ 84
M +DG + A PR+ +
Sbjct: 96 MNAKFLDGWVIFVDPAKPREPR 117
>IMGA|AC139854_19.4 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 28119974-28114016 F
EGN_Mt071002 20080227
Length = 477
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 21/187 (11%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGD-VVEAVIMKD-RTTGRARGFGFVVFADPSVAE--- 59
+LFIG + + E +++ G V+ ++KD +++ R RGF F+ + + + AE
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 60 -RVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 118
++ +D A PR+ + K ++V LP IT
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRN--------------SESSSSSQVKAVYVKNLPENIT 284
Query: 119 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT-FHELNGKMVE 177
++ K F+ G IT V + Q +GF+ F K L T +E+NG+ +E
Sbjct: 285 QNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLE 344
Query: 178 VKRAVPK 184
A P+
Sbjct: 345 CSLAKPQ 351
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 31/161 (19%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+++IGGI +T+E+ LR + Q+ G+V E +MK + A+G+ FV F +A + + E
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKE 158
Query: 65 KH--VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 122
+ GR + K P ++ ++F+G +P T D
Sbjct: 159 LNNSEFKGRKI---KCSPSQVKH---------------------RLFIGSVPKEWTVEDM 194
Query: 123 KNYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITFDSEEGVE 161
K + G + V ++ D ++ R RGF FI + + E
Sbjct: 195 KKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAE 235
>IMGA|AC174312_11.5 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 11950732-11953538 F
EGN_Mt071002 20080227
Length = 285
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 22/183 (12%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
KL+ G + + + L + +G ++ DR TG++RGF FV + V+
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 173
Query: 63 MEKHVIDGRTVE---AKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 119
++ GRT+ + K P++ K+FVG L T+T
Sbjct: 174 LDGKEFMGRTLRVNFSDKPKPKEPLYPETEY----------------KLFVGNLAWTVTS 217
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFH-ELNGKMVEV 178
F + GT+ V++D T + RG+GF+++ ++ ++ L + EL G+ + V
Sbjct: 218 ESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRV 277
Query: 179 KRA 181
A
Sbjct: 278 SLA 280
>IMGA|AC127168_20.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 28623498-28619047 F
EGN_Mt071002 20080227
Length = 454
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 24/198 (12%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
+++G + +E L F + G+V A +++++ TG++ G+GFV F ++AE+V+
Sbjct: 118 IWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQN- 176
Query: 66 HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTK-----KIFVGGLPSTITES 120
+G +P DQ ++ +FVG L +T++
Sbjct: 177 --FNG------TMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDA 228
Query: 121 DFKNYF-DQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNG-----K 174
+ F +F +I V+ D NT R +G+GF+ F G E + E+NG +
Sbjct: 229 MLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRF----GDESERTRAMTEMNGVYCSSR 284
Query: 175 MVEVKRAVPKELSPSPSR 192
+ V A PK+ +P +
Sbjct: 285 PMRVGVATPKKTYGNPQQ 302
>IMGA|AC139707_45.4 RNA-binding region RNP-1 (RNA recognition
motif); von Willebrand factor, type A
chr02_pseudomolecule_IMGAG_V2 27085036-27087059 H
EGN_Mt071002 20080227
Length = 98
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV--- 163
K+FV L T+ ++ F FG +T+ ++ D NTQRP+GFGF+++ SE EK
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKA 67
Query: 164 -------LYKTFHELNGKMVEVKRAVPKE 185
+ ++G+++ V+ A PK+
Sbjct: 68 LNGRYSNISYMVQIVDGRLIFVEHAKPKD 96
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER---- 60
KLF+ +S+ T +++L F FG + EA ++ D+ T R +GFGFV + AE+
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKA 67
Query: 61 -------VVMEKHVIDGRTVEAKKAVPRD 82
+ ++DGR + + A P+D
Sbjct: 68 LNGRYSNISYMVQIVDGRLIFVEHAKPKD 96
>IMGA|AC149546_31.4 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 17368014-17360795 E
EGN_Mt071002 20080227
Length = 971
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
++F+GG+ DT EE L++ FQ G+V+E + K+ +T + RG+ V FA+ A++ +
Sbjct: 391 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 450
Query: 63 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 122
M+ VI G+ P +D + +F+G + +T T+
Sbjct: 451 MKNPVIRGKRC---GTSPSEDNDT---------------------LFLGNICNTWTKEAV 486
Query: 123 KNYFDQFGT--ITDVVVMYD-HNTQRPRGFGFITF 154
K +G + ++ ++ D + RGF F+ F
Sbjct: 487 KQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEF 521
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAV----IMKD-RTTGRARGFGFVVF---ADPSV 57
LF+G I +E ++Q +++G VE V ++ D + G +RGF F+ F AD +
Sbjct: 472 LFLGNICNTWTKEAVKQKLKDYG--VEGVENITLVPDVQHEGLSRGFAFLEFSCHADAML 529
Query: 58 AERVVMEKHVIDG---RTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLP 114
A + + + VI G RT + A P + + + K +F+ GLP
Sbjct: 530 AYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEIMA-------------QVKSVFINGLP 576
Query: 115 STITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGV 160
E + + +G I +V+ +T + + GF+ F + E
Sbjct: 577 LHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAA 622
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 104 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV 163
+ +IFVGGL TE D K F + G + +V + + +T + RG+ + F ++E +K
Sbjct: 388 KEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKA 447
Query: 164 LYKTFHELNGKMVEVKRA 181
L E+ ++ KR
Sbjct: 448 LS----EMKNPVIRGKRC 461
>IMGA|AC122162_7.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 2878943-2880084 F
EGN_Mt071002 20080227
Length = 134
Score = 55.8 bits (133), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER--VV 62
K+F+ G+++ T EE+L + F +G+VV+A I+ ++ R +GFG+V FA+ A + +
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIG 92
Query: 63 MEKHVIDGRTVEAKKAVPRDDQN 85
M ++ GR + P + +N
Sbjct: 93 MNGKILHGRVLYVDMDPPNEQKN 115
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
T KIFV GL + TE F Q+G + ++ + +R +GFG++TF EE K
Sbjct: 31 TSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQ 90
Query: 165 YKTFHELNGKMV 176
+NGK++
Sbjct: 91 IG----MNGKIL 98
>IMGA|CU041253_29.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 34554315-34559382 E
EGN_Mt071002 20080227
Length = 407
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 9/176 (5%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADP-SVAER 60
D +F + E + ++F G V + ++ DR + R++G G++ F D SV
Sbjct: 33 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMA 92
Query: 61 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRT-KKIFVGGLPSTITE 119
+ + ++ G+ V K + ++N +K++VG L +TE
Sbjct: 93 IALSGQLLLGQPVMVKPS--EAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTE 150
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKM 175
S + F+ FGT+ V + D T +GFGFI F E K LNGK+
Sbjct: 151 SQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-----KAAQSLNGKL 201
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFA--DPSVAERVV 62
KL++G + ++ E +LR+ F+ FG V + D TG +GFGF+ FA + + A + +
Sbjct: 138 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSL 197
Query: 63 MEKHVIDGRTVEA 75
K I GRT++
Sbjct: 198 NGKLEIAGRTIKV 210
>IMGA|CT868696_6.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 30876631-30887902 E
EGN_Mt071002 20080227
Length = 436
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 29/165 (17%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEA-VIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+++G I + ++ L + FQ+ G + +I K++++ +GFV + D + A +M
Sbjct: 36 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS-----YGFVDYHDRASAALAIMT 90
Query: 65 KH--VIDGRTVEAKKAVP---RDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 119
H + G+ ++ A R+D + +FVG L +T+
Sbjct: 91 LHGRQLYGQALKVNWAYANSSREDTSGHF------------------NVFVGDLSPEVTD 132
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+ F + T +D VM+DH T R +G+GF++F + + +
Sbjct: 133 ATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAI 177
>IMGA|AC174301_43.4 Polyadenylate binding protein, human types 1, 2,
3, 4 chr01_pseudomolecule_IMGAG_V2 14998974-14995422 E
EGN_Mt071002 20080227
Length = 534
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 12/161 (7%)
Query: 4 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 63
G +F+ ++ + L FQ +G+++ + I + G+++GFG++ F D + V +
Sbjct: 103 GNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSED-GKSKGFGYIQF-DSEESANVAI 160
Query: 64 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
+K ++G TV RD Q + ++V L +TE
Sbjct: 161 QK--MNGSTV-------RDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKHLG 211
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
F FG I + + D N Q +GFGF+ +DS + + +
Sbjct: 212 EKFSSFGKIVSLAIKKDENGQ-SKGFGFVNYDSPDDARRAM 251
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 23/177 (12%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-ME 64
L++G + D + +L + F F ++ A + KD TG++ +G+V + A R + ++
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELK 76
Query: 65 KHV-IDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
H ++G+ + + RD +FV L ++I
Sbjct: 77 NHSSLNGKVIRVM-WLSRDADARKSGKGN---------------VFVKNLAASIDNVGLH 120
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 180
+ F ++G I + + + +GFG+I FDSEE + K +NG V K+
Sbjct: 121 DLFQKYGNILSSKIARSEDG-KSKGFGYIQFDSEESANVAIQK----MNGSTVRDKQ 172
>IMGA|AC137522_14.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 33036485-33042576 F
EGN_Mt071002 20080227
Length = 567
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 8/175 (4%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADP-SVAER 60
D +F + E + ++F G V + ++ DR + R++G G++ F D SV
Sbjct: 200 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMA 259
Query: 61 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
+ + ++ G+ V K + ++N +K++VG L +TE+
Sbjct: 260 IALSGQLLLGQPVMVKPS--EAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEA 317
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKM 175
+ + F+ FG I V + D T +GFGF+ F E K LNGK+
Sbjct: 318 NLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHA-----KAAQSLNGKL 367
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFA--DPSVAERVV 62
KL++G + ++ E LR+ F+ FG + + D TG +GFGFV FA + + A + +
Sbjct: 304 KLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSL 363
Query: 63 MEKHVIDGRTVEA 75
K I GRT++
Sbjct: 364 NGKLEIAGRTIKV 376
>IMGA|CU062643_11.3 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 28273303-28271287 H
EGN_Mt071002 20080227
Length = 290
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 14/163 (8%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
+L + W + E +R F+ +G V+ V + R RG FV P A +
Sbjct: 90 RLLAQNVPWSSTTEDVRSLFEKYGKVLH-VELSMYNKNRNRGLAFVEMGSPEEASEALNS 148
Query: 63 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 122
++ + DGR + + A P+ ++ T +FV P D
Sbjct: 149 LQSYEFDGRIINIQYAKPKKEKIPPPVERKPI----------TYNLFVANFPYEARSKDV 198
Query: 123 KNYFDQ-FGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
K +FD G + V++ N +RP G+GF+++ S++ ++ L
Sbjct: 199 KEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEAL 241
>IMGA|AC122728_50.4 Polyadenylate binding protein, human types 1, 2,
3, 4 chr03_pseudomolecule_IMGAG_V2 29868052-29861846 E
EGN_Mt071002 20080227
Length = 414
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 18/221 (8%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
+++ +S ++ L+ F +G + AV+M+D G+++ FGFV F A+
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRD-VDGKSKCFGFVNF---ENADAAAEAV 260
Query: 66 HVIDGRTVEAK-----KAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
++G+ + K KA+ + ++ +++ L ++T+
Sbjct: 261 EALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDE 320
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 180
F +FGT+T ++ D RG GF+ F + E + L E+NGKMV K
Sbjct: 321 KLSELFSEFGTVTSCKILRDPQGI-SRGSGFVAFSTPEEATRAL----AEMNGKMVAGK- 374
Query: 181 AVPKELSPSPSRGQLGG-YSYAMSRVGSFANGFTQGYNPGM 220
P ++P+ + + ++ F+N Y P M
Sbjct: 375 --PLYVAPAQKKEERKARLQVGLANGSKFSNEAILSYRPIM 413
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
+FI + + + L F FG+++ I D +G ++G+GFV F + A+ + +
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDKL 172
Query: 64 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
+++ + V + D++ + ++V L ++T+ D K
Sbjct: 173 NGMLLNDKPVYVGHFQRKQDRDNALSNA------------KFNNVYVKNLSESVTDDDLK 220
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITF 154
N F ++GTIT VVM D + + + FGF+ F
Sbjct: 221 NTFGEYGTITSAVVMRDVDG-KSKCFGFVNF 250
>IMGA|AC157373_30.4 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 1636778-1642537 E
EGN_Mt071002 20080227
Length = 541
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 24/159 (15%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
++++GGI D E L+++ + G+VV+ I K + RGF FV + +A + + E
Sbjct: 236 EVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIKE 295
Query: 65 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 124
++ +A K Q ++F+G +P + E D K
Sbjct: 296 ---LNNTEFKAGKIKCSKSQ-------------------AKSRLFIGNIPRSWGEKDLKK 333
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITFDSEEGVE 161
G +T V ++ D N RG+ FI + + + E
Sbjct: 334 VVSDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAE 372
>IMGA|AC140027_27.5 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 23874434-23871286 F
EGN_Mt071002 20080227
Length = 284
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 104 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV 163
+TKK+FV GL +E + F+ FG + +V V+ D ++R +G+ FI + +EE
Sbjct: 190 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAA 249
Query: 164 LYKTFHELNGKMV 176
L E+NGK++
Sbjct: 250 L----KEMNGKII 258
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
KLF+ G+S+ T+E+ LR F+ FG++VE ++ D+ + R++G+ F+ + A + E
Sbjct: 193 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKE 252
Query: 65 KH--VIDGRTV---EAKKAVPR 81
+ +I+G + AK PR
Sbjct: 253 MNGKIINGWMIVVDVAKTTPPR 274
>IMGA|AC146760_9.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 22846699-22850069 E
EGN_Mt071002 20080227
Length = 248
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA--ER 60
P L + + D E LR+ F +FG + + + KD TG+ RGFGF+ F DP+ A +
Sbjct: 40 PTSLLVRNLRHDCRPEDLRRPFGHFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAK 99
Query: 61 VVMEKHVIDGRTV 73
M+ V+ GR +
Sbjct: 100 YHMDGQVLLGREI 112
>IMGA|AC149129_30.4 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 19090202-19095517 E
EGN_Mt071002 20080227
Length = 824
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
++FVGGL TE D + F + G IT+V + + T+R +GF + F++ E V++ L +
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 167 TFHE-LNGKMV 176
+ +NGK
Sbjct: 255 LKNPVINGKQC 265
>IMGA|AC129091_32.5 RNA-binding region RNP-1 (RNA recognition motif)
chr02_pseudomolecule_IMGAG_V2 4002353-3997865 E
EGN_Mt071002 20080227
Length = 325
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 37/55 (67%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 59
++F+GG+ + E ++R+ Q FG + I++D+ TG ++G+GF ++ DP+V +
Sbjct: 102 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTD 156
>IMGA|CR962128_15.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 28226391-28230385 H
EGN_Mt071002 20080227
Length = 289
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 4 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV- 62
G L + I D E LR F+ FG V + I KD +G+ RGF FV F D A
Sbjct: 47 GSLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYEASEAQY 106
Query: 63 -MEKHVIDGRTV 73
M++ + GR +
Sbjct: 107 HMDRQIFAGREI 118
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 108 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF-DSEEGVEKVLYK 166
+ V +P + + F++FG + DV + D+ + +PRGF F+ F D+ E E +
Sbjct: 49 LLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYEASEAQYHM 108
Query: 167 TFHELNGKMVEV-----KRAVPKELSPSPSRGQLGGYSYAMSR 204
G+ + V R P+E+ SR + G SY R
Sbjct: 109 DRQIFAGREISVVVAAETRKRPEEMRHRTSRSRGPGGSYGGQR 151
>IMGA|CT963115_17.5 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 18117613-18120511 F
EGN_Mt071002 20080227
Length = 170
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 108 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT 167
++VGGL + ES F FG I DV D TQ+ R FGF+TF E +
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 168 F-HELNGKMVEVKRAVPKELS 187
EL G+++ V A+P+++
Sbjct: 72 DGAELYGRVLTVNYALPEKIK 92
>IMGA|CR962130_8.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 9040273-9043083 E
EGN_Mt071002 20080227
Length = 327
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 108 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL-YK 166
++V GL S +TE D + +F + G + ++ + T+ RGF F+T D+ E + + Y
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYL 192
Query: 167 TFHELNGKMVEVKRAV 182
L G+ + V+R +
Sbjct: 193 NQSILEGRYITVERVL 208
>IMGA|AC135465_37.4 RNA-binding region RNP-1 (RNA recognition
motif); WW/Rsp5/WWP chr07_pseudomolecule_IMGAG_V2
29425781-29433309 H EGN_Mt071002 20080227
Length = 498
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 9/157 (5%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFV---VFADPSVAERV 61
K+++ + +E +R FQ +G +VE V+++D+ TG +G V F + +A +
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 62 VMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 121
+ ++ G + + K++VG + + ++ +
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQE 194
Query: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEE 158
+ F +G I DVVV+ R RG+GF+ F + E
Sbjct: 195 IEEIFSPYGHIEDVVVL------RNRGYGFVKFYNRE 225
>IMGA|AC161788_24.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 7561377-7554566 E
EGN_Mt071002 20080227
Length = 596
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 59
P ++F+GG+ + E ++R+ + FG + ++KDR TG ++G+ F V+AD +V +
Sbjct: 381 PDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAVTD 437
>IMGA|AC124956_60.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 7399623-7406434 E
EGN_Mt071002 20080227
Length = 596
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 59
P ++F+GG+ + E ++R+ + FG + ++KDR TG ++G+ F V+AD +V +
Sbjct: 381 PDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAVTD 437
>IMGA|AC126781_4.5 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 31547259-31549737 E
EGN_Mt071002 20080227
Length = 182
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 108 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT 167
+++G +P E++ + YF QFGT+ + + + T + R FGFI F+S E V K++ T
Sbjct: 53 LYIGRIPHGFYETEMEAYFGQFGTVKRLRIARNKKTGKSRHFGFIEFESPE-VAKIVADT 111
Query: 168 FH 169
H
Sbjct: 112 MH 113
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
L+IG I E + YF FG V I +++ TG++R FGF+ F P VA+ V
Sbjct: 53 LYIGRIPHGFYETEMEAYFGQFGTVKRLRIARNKKTGKSRHFGFIEFESPEVAKIV 108
>IMGA|AC150443_41.5 RNA-binding region RNP-1 (RNA recognition
motif) chr07_pseudomolecule_IMGAG_V2 32023635-32021981
E EGN_Mt071002 20080227
Length = 205
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
L++ I + E+L++ F+ G+V + V+ + +G+ R FGF+ +A+ S A + V
Sbjct: 8 LYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERSSALKAVKET 66
Query: 64 EKHVIDGRTVEAKKAVPRDDQN 85
EK+ IDG+ +E A P+ ++
Sbjct: 67 EKYEIDGQALEVVIAKPQAEKK 88
>IMGA|CU234149_15.3 RNA-binding region RNP-1 (RNA recognition motif)
chr00_pseudomolecule_IMGAG_V2 11942257-11948923 E
EGN_Mt071002 20080227
Length = 626
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 59
P ++F+GG+ + E ++R+ + FG + ++KDR TG ++G+ F V+ D +V +
Sbjct: 409 PDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTD 465
>IMGA|CT010464_26.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 315963-309297 E
EGN_Mt071002 20080227
Length = 626
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 59
P ++F+GG+ + E ++R+ + FG + ++KDR TG ++G+ F V+ D +V +
Sbjct: 409 PDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTD 465
>IMGA|AC187356_26.4 RNA-binding region RNP-1 (RNA recognition
motif); Zinc finger, CCHC-type - 5prime partial
chr02_pseudomolecule_IMGAG_V2 1366063-1367727 E
EGN_Mt071002 20080227
Length = 238
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 30 VVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--MEKHVIDGRTVEAKKAVPR 81
+VEA ++ D+ +GR+RGFGFV F D E + M +DGRT+ KA P+
Sbjct: 2 LVEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQ 55
>IMGA|CT033766_5.5 U2 auxiliary factor small subunit
chr05_pseudomolecule_IMGAG_V2 23709374-23707315 E
EGN_Mt071002 20080227
Length = 161
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 108 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSE 157
+FVGG+P TE D F Q+G + D+ ++ D T + +GF FI ++ +
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQ 87
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFAD 54
D +F+GGI +D E + F +G+VV+ +++D+ TG+++GF F+ + D
Sbjct: 34 DSAYVFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYED 86
>IMGA|AC121245_41.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 25922233-25916898 F
EGN_Mt071002 20080227
Length = 199
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 106 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY 165
+ IFVG + T D + +F GT+ V + D Q P+G+ ++ F E V++ L
Sbjct: 68 RSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQ-PKGYAYVEFVEVEAVQEALL 126
Query: 166 KTFHELNGKMVEV 178
EL+G+ ++V
Sbjct: 127 LNESELHGRQLKV 139
>IMGA|AC202373_19.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 35361221-35355148 E
EGN_Mt071002 20080227
Length = 595
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 12/185 (6%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
LF+G +S+ + ++FQ+ G+VV+ D GR +GFG V FA A+ +
Sbjct: 342 LFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE-GRFKGFGHVEFASAEAAQSALE-- 398
Query: 66 HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK-N 124
++G+ + ++AV R D +++ +FV G + E + +
Sbjct: 399 --MNGQEL-LQRAV-RLDLARERGAFTLIIIAQSGGRGQSQTVFVRGFDKNLGEDEIRAK 454
Query: 125 YFDQFG----TITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 180
+ FG T V + D + +GF ++ F + K L EL+G + V
Sbjct: 455 LMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALELHESELDGYQLSVDE 514
Query: 181 AVPKE 185
A P++
Sbjct: 515 AKPRD 519
>IMGA|CT961058_24.4 U2 auxiliary factor small subunit
chr03_pseudomolecule_IMGAG_V2 12603413-12599912 E
EGN_Mt071002 20080227
Length = 499
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 115 STITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK-TFHELNG 173
ST +E D NYF FG++ DV + Q+ R FGF+TF E V+ +L K H + G
Sbjct: 291 STFSEEDVSNYFGTFGSVEDVRI----PCQQRRMFGFVTFVEPETVKMILDKGNPHYVRG 346
Query: 174 KMVEVK 179
V VK
Sbjct: 347 SRVLVK 352
>IMGA|AC146704_27.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 6163159-6161440 F
EGN_Mt071002 20080227
Length = 128
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K++VG L +T K +F + G V T + GFGF+TF S+E VE +
Sbjct: 53 KVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAI-S 111
Query: 167 TFHE--LNGKMVEVKRA 181
+F+ L G+ + V +A
Sbjct: 112 SFNNALLEGQKIRVNKA 128
>IMGA|AC144459_24.5 RNA-binding region RNP-1 (RNA recognition
motif); HMG-I and HMG-Y, DNA-binding
chr05_pseudomolecule_IMGAG_V2 23848157-23844573 F
EGN_Mt071002 20080227
Length = 267
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
L + I++ T + L F +G VV+ I +DR TG +RGF FV + A + V +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 64 EKHVIDGRTV 73
+ ++DGR +
Sbjct: 78 DGRMVDGREI 87
>IMGA|CR954196_42.5 Histone-fold; U2 auxiliary factor small subunit
chr05_pseudomolecule_IMGAG_V2 34693128-34691649 E
EGN_Mt071002 20080227
Length = 425
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 115 STITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK-TFHELNG 173
ST TE D YF+ FG + DV + Q+ R FGF+TF E V +L K H + G
Sbjct: 344 STFTEEDVAEYFNAFGYVEDVRI----PCQQKRMFGFVTFADPETVRMILDKGNPHYVRG 399
Query: 174 KMVEVK 179
V VK
Sbjct: 400 SRVLVK 405
>IMGA|AC203561_5.4 Histone-fold; U2 auxiliary factor small subunit
chr04_pseudomolecule_IMGAG_V2 25404323-25409689 E
EGN_Mt071002 20080227
Length = 666
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 115 STITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
ST E D YF +FG + DV + Y Q+ R FGF+TF E V+ +L K
Sbjct: 333 STFREEDVSEYFSKFGPVQDVRIPY----QQKRMFGFVTFVFPETVKDILSK 380
>IMGA|CT963106_6.5 Rhodopsin-like GPCR superfamily; RNA-binding
region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 24353203-24350247 F
EGN_Mt071002 20080227
Length = 149
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFA--DPSVAERVV 62
K+ + + + T E L++ F NFG + E ++KD +T R++G F+ + D ++
Sbjct: 40 KILVKNLPYFTGENALQKKFSNFGKIAEVQMVKDVSTERSKGLAFIQYTCQDDAMLALET 99
Query: 63 MEKHVIDGRTVEAK 76
M++ GRT+ +
Sbjct: 100 MDQQSFYGRTISVE 113
>IMGA|AC137701_36.4 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 16974271-16978271 E
EGN_Mt071002 20080227
Length = 382
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K+ V LP E++ ++ F GT+ +V + +T +GF F+ F ++ E + K
Sbjct: 283 KLIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRK 342
Query: 167 TFHELNG-----KMVEVKRAVPKEL 186
LNG +++ V AVPK++
Sbjct: 343 ----LNGSKFGSRLIAVDWAVPKKI 363
>IMGA|AC144483_30.5 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 31240580-31235784 E
EGN_Mt071002 20080227
Length = 402
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 21/148 (14%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER--VVM 63
+++G I +E L++ F + G + +++ + +GFV + D S A V +
Sbjct: 48 VYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIVTL 103
Query: 64 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
I G++++ A R + IFVG L +T++
Sbjct: 104 NGRNIFGQSIKVNWAYTRGQREDTSGHF---------------HIFVGDLSPEVTDATLY 148
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGF 151
F + + +D VM+D T R RGFGF
Sbjct: 149 ACFSAYSSCSDARVMWDQKTGRSRGFGF 176
>IMGA|AC119413_25.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 11723269-11717829 E
EGN_Mt071002 20080227
Length = 324
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 106 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY 165
K + V LP ++++ D K+ F Q GT+ DV ++ + + +G+ F+T DS EG + +
Sbjct: 96 KNLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDG-KGKGYTFVTMDSGEGAQAAVD 154
Query: 166 K-TFHELNGKMVEVKRA 181
K E++G+++ V+ A
Sbjct: 155 KFNATEISGRILRVEFA 171
>IMGA|AC203559_11.4 RNA-binding region RNP-1 (RNA recognition motif)
chr06_pseudomolecule_IMGAG_V2 4176093-4171291 E
EGN_Mt071002 20080227
Length = 240
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPS 56
D +LF G + + N++ L + F F A +++D+ TG+ +G+GF+ FA+P+
Sbjct: 130 DDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPA 184
>IMGA|AC202369_17.3 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 17195654-17190859 E
EGN_Mt071002 20080227
Length = 240
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPS 56
D +LF G + + N++ L + F F A +++D+ TG+ +G+GF+ FA+P+
Sbjct: 130 DDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPA 184