Miyakogusa Predicted Gene

chr6.LjT02P05.30.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr6.LjT02P05.30.nd - phase: 2 /pseudo/partial
         (594 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC161399_61.5 Peptidase S26A, signal peptidase I; WD40-like...   710   0.0  
IMGA|CT009511_16.4 WD40-like chr03_pseudomolecule_IMGAG_V2 13245...   473   e-133

>IMGA|AC161399_61.5 Peptidase S26A, signal peptidase I; WD40-like
           chr02_pseudomolecule_IMGAG_V2 7542576-7552440 E
           EGN_Mt071002 20080227
          Length = 1288

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/586 (63%), Positives = 422/586 (72%), Gaps = 31/586 (5%)

Query: 7   QRVTDMAFFAEDLHLLASASTDGTIFVWRINEGPDEEDKPQITGKVILAIQMLGDSESVH 66
           QRV+DMAFFAED+HLLASASTDG IF+W+INEGPDEEDKPQITG+VILAIQ+LG+SESVH
Sbjct: 162 QRVSDMAFFAEDVHLLASASTDGRIFIWKINEGPDEEDKPQITGRVILAIQILGESESVH 221

Query: 67  PR--------EILIVAIGNRVLKIDTMKAGKGEKFSAEEPLKCNIDKLIDGVHLIGKHDG 118
           PR        EILIVAIGNR+LKIDTMKAGKGE +SAEEPLKCNIDKLIDGVHLIGKHD 
Sbjct: 222 PRVCWHPHKQEILIVAIGNRILKIDTMKAGKGETYSAEEPLKCNIDKLIDGVHLIGKHDD 281

Query: 119 NVTELSMCQWMKSRLASASADGTVKIWEERKATPLAVLRPYDRXTCXFCDILDSSHGPYH 178
           N+TELSMCQWMKSRLASASADGTVKIWEERKATPLAVLRP+D         L + H P H
Sbjct: 282 NITELSMCQWMKSRLASASADGTVKIWEERKATPLAVLRPHDGKPVNSVTFLTAPHRPDH 341

Query: 179 IILITVGPLNREVKIWVSDNEEGWLLPSDSESWNCIQTLDIKSSSEPNPEDAFFNQVVAL 238
           I+L+T GPLN+EVKIWVS  EEGWLLPSDSESW C+QTLDI+SSSE NP++AFFNQVVAL
Sbjct: 342 IVLVTAGPLNQEVKIWVSGYEEGWLLPSDSESWICVQTLDIRSSSEANPDEAFFNQVVAL 401

Query: 239 PRAGLFLLANAKKNTIYAVHIEFGTNPTATRLDYIAEFTVTMPILSLTGTSDSLPDGDHI 298
           PRAGL LLANAKKNTIYAVHIE+G NPTATR+DYI+EF VTMPILSL GTSDSLPDGDH+
Sbjct: 402 PRAGLVLLANAKKNTIYAVHIEYGPNPTATRMDYISEFIVTMPILSLIGTSDSLPDGDHL 461

Query: 299 VQIYCVQTQAIQQYGLTLSQCLPPPLDNVELEKIESSRDFDALDGSTNQEAGNMPQAGNM 358
           VQIYCVQTQAIQQYGL LSQCLPPPLDN+ELEK E S    A DGS + E  NMPQ   +
Sbjct: 462 VQIYCVQTQAIQQYGLNLSQCLPPPLDNIELEKTEPSVS-RAWDGSADLETVNMPQVP-L 519

Query: 359 DGSESAVIRPSESLASPDTSGLPETSIPDTETKPNDLSSHNGFDHIHTAXXXXXXXXXXX 418
             SESAV     +L+S +  G PE  + D + KPNDL SHN F+++H A           
Sbjct: 520 SSSESAV-----NLSSSNIHGPPEAFVSDNKIKPNDLPSHNSFEYVHAAPPPLPPSPRLS 574

Query: 419 XXXXXXXXXXX--XXXXXXXXDHINEQQRNFDSSTEQIIESGKDNVAEMPASSDNLQNTX 476
                                DH NE   N D S E+ I+S KDNVA++P S DNLQ + 
Sbjct: 575 RKLSASKSSSNILATSSASTGDHKNEPA-NLDPSVEERIKSEKDNVADVPVSGDNLQESD 633

Query: 477 XXXXXXXXXXXXXPTVFKHPTHLVTPSEIASKAALSSENSYASDCMNVQDVTSHRDARKY 536
                        P  FKHPTHLVTPSEI SKAALS  NS  S     + V +H DA K+
Sbjct: 634 KVVQTDVSVVSDSPITFKHPTHLVTPSEIFSKAALSPANSNIS-----EGVAAHSDAEKF 688

Query: 537 EVEVKVVGETALIKKIMSMTGTETYRPM-----LMKRKKKLFYSSG 577
           EVEVKVV E   I+   +   TE  R         K+K+KLF+S  
Sbjct: 689 EVEVKVVDE---IETGSNQENTEHDRDRGSHTDAAKKKEKLFHSQA 731


>IMGA|CT009511_16.4 WD40-like chr03_pseudomolecule_IMGAG_V2
           13245549-13253931 E EGN_Mt071002 20080227
          Length = 1383

 Score =  473 bits (1217), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 217/343 (63%), Positives = 268/343 (78%), Gaps = 8/343 (2%)

Query: 7   QRVTDMAFFAEDLHLLASASTDGTIFVWRINEGPDEEDKPQITGKVILAIQMLGDSESVH 66
           QRVTD+AFFAED+HLLAS  TDG +FVW+I+EGPD+EDKPQIT  +++A+Q++G+ +  H
Sbjct: 252 QRVTDLAFFAEDVHLLASVGTDGRVFVWKISEGPDDEDKPQITANIVIAVQIVGEEKVEH 311

Query: 67  PR--------EILIVAIGNRVLKIDTMKAGKGEKFSAEEPLKCNIDKLIDGVHLIGKHDG 118
           P+        EILIV +G  VL+IDT K G GE F AE+P KC +DKLIDGV L+G HDG
Sbjct: 312 PQICWHCHKQEILIVGMGKNVLRIDTTKVGNGEAFVAEDPPKCPLDKLIDGVQLVGTHDG 371

Query: 119 NVTELSMCQWMKSRLASASADGTVKIWEERKATPLAVLRPYDRXTCXFCDILDSSHGPYH 178
            VT+LSMCQWM +RL SAS DGT+KIWE+RK  PLAV RP+D           + H P H
Sbjct: 372 EVTDLSMCQWMTNRLVSASQDGTIKIWEDRKTHPLAVFRPHDGHPVFSATFFTAPHQPNH 431

Query: 179 IILITVGPLNREVKIWVSDNEEGWLLPSDSESWNCIQTLDIKSSSEPNPEDAFFNQVVAL 238
           I+LIT GP NREVK+WVS +EEGWLLPSD+E+W C QTL++KSS++ + +DAFFNQV AL
Sbjct: 432 IVLITAGPQNREVKLWVSASEEGWLLPSDTETWKCTQTLELKSSAKLSLKDAFFNQVAAL 491

Query: 239 PRAGLFLLANAKKNTIYAVHIEFGTNPTATRLDYIAEFTVTMPILSLTGTSDSLPDGDHI 298
           P AGL LLANA++N IYAVH+E+G NP +T +DY+AEFTVTMPILS TGTSD LP G+HI
Sbjct: 492 PHAGLLLLANAQRNAIYAVHLEYGPNPESTHMDYMAEFTVTMPILSFTGTSDILPHGEHI 551

Query: 299 VQIYCVQTQAIQQYGLTLSQCLPPPLDNVELEKIESSRDFDAL 341
           VQ+YCVQT AIQQY L L+QCLPPPL+N  L+K +SS   DA+
Sbjct: 552 VQVYCVQTLAIQQYALDLAQCLPPPLENAGLDKSDSSVSRDAI 594



 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 35/58 (60%), Gaps = 8/58 (13%)

Query: 492 VFKHPTHLVTPSEIASKAALSSENSYASDCMNV----QDVTSHRDARKYEVEVKVVGE 545
           +FK PTHLVTPSEI +KA+ SSE +       V    QDV    D    EVEVKVVGE
Sbjct: 754 IFKQPTHLVTPSEI-TKASSSSETNMVDRVSEVETKIQDVV---DVGNDEVEVKVVGE 807