Miyakogusa Predicted Gene

chr6.CM0055.30.nd
Show Alignment:  
BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr6.CM0055.30.nd - phase: 0 
         (270 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC148396_28.4 DNA polymerase V chr02_pseudomolecule_IMGAG_V...   355   1e-98

>IMGA|AC148396_28.4 DNA polymerase V chr02_pseudomolecule_IMGAG_V2
           2274194-2281553 E EGN_Mt071002 20080227
          Length = 1268

 Score =  355 bits (910), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 194/278 (69%), Positives = 214/278 (76%), Gaps = 15/278 (5%)

Query: 1   MASKKRNSVPEEENATDSPK--PLNKKSKN-IDAVALPSSTKP-MESKKKRKALDKERRR 56
           M SKKRN      NA DS +  PLNKKSKN  D+ A PSSTKP ME+ KK KA DK+RR 
Sbjct: 1   MGSKKRN------NAIDSQEKEPLNKKSKNNDDSTATPSSTKPTMENHKKSKAFDKQRRS 54

Query: 57  ATAGEVVPEPKPVAAADSPSTSGGSAA----PEFHIGVFKDLAVANETMREAAAKQMVRE 112
           A +      P P +A    STSGG +     PEFHIGVFKDLA  NE++REAA KQMV E
Sbjct: 55  AKSKSKSELPAPDSAILVDSTSGGGSGVDSLPEFHIGVFKDLAAVNESVREAAVKQMVNE 114

Query: 113 LKEVQNAYDGLGESEKEEGDGGFKLEAEKDDGLENCAASVRYAVRRLIRGVSSSRECARP 172
           LKEVQ AY+G G+  + +GDGGFKLEAEK+DGL+ CA SVRYA RRLIRGVSSSRECAR 
Sbjct: 115 LKEVQKAYEG-GQGMEIDGDGGFKLEAEKNDGLDECAPSVRYAFRRLIRGVSSSRECARQ 173

Query: 173 GFALGLAALVGSIHNIRVESFLKLVVDLLEVTSSMKGQEAKDSLLGRLFAYGALARSGRL 232
           GFALGL  L G+I  IRV+SFLKLVVDLLEVTSSMKGQEAKD LLGRLFAYGALARSGRL
Sbjct: 174 GFALGLTLLAGAISKIRVDSFLKLVVDLLEVTSSMKGQEAKDCLLGRLFAYGALARSGRL 233

Query: 233 EHEYSSDKNTSSIKEFISALISLANRKRYLQDPAVSII 270
            HE+S DKNT  IKEF+  LISLANRKRYLQ+PAVSII
Sbjct: 234 IHEWSMDKNTPYIKEFVGILISLANRKRYLQEPAVSII 271