Miyakogusa Predicted Gene

chr5.CM0357.770.nc

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr5.CM0357.770.nc + phase: 0 
         (258 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC135317_16.4 Seed maturation protein chr01_pseudomolecule_...   210   5e-55
IMGA|AC146744_17.4 Seed maturation protein chr03_pseudomolecule_...   160   5e-40
IMGA|AC151598_69.5 Tubby; Cyclin-like F-box; Seed maturation pro...   100   6e-22

>IMGA|AC135317_16.4 Seed maturation protein
           chr01_pseudomolecule_IMGAG_V2 16656533-16650754 E
           EGN_Mt071002 20080227
          Length = 264

 Score =  210 bits (534), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 122/236 (51%), Positives = 147/236 (62%), Gaps = 5/236 (2%)

Query: 1   MSQEQPRRTQ----PGQDPIKYGDVFPVSGDLAQKPVAPEDAAMMQSAETRVLGHTQPGG 56
           MSQEQP+R Q      Q+PIKYGDVF VSG+LA +P+ P DAA+MQ+ E + LG TQ G 
Sbjct: 1   MSQEQPQRPQAEQFSEQEPIKYGDVFNVSGELASQPIKPRDAALMQATENQALGQTQKGS 60

Query: 57  AAAVMQSAATRNEQAGLVGHRXXXXXXXXXXXXXXXXHVPGRRIITETVGGQVVGQFVEP 116
            A+VMQSAA  N  AGLV H                  V   R+ITE+VG QVVGQFVEP
Sbjct: 61  PASVMQSAAAVNTAAGLVSHGDISDIAKNQGMSVSKTKVGANRVITESVGSQVVGQFVEP 120

Query: 117 TPVQTGPIGAVRESAITIGEALEATAKT-VGDKPVDQSDASAIQAAEVRATGSNEILPGG 175
                 P   + ++AITIGEALEA+A +  GDKP+DQSDA+AIQAAE+RATG N   PGG
Sbjct: 121 DVPMNDPGLVLDKNAITIGEALEASALSQAGDKPLDQSDAAAIQAAEMRATGKNHTEPGG 180

Query: 176 LXXXXXXXXXXXXECKSDQEKIKLADVLTGATAKLPADKAATLQDAEGVASAEVRN 231
           L                D +K  L DV++GA  KL +DKA T +DAEGV  AE+RN
Sbjct: 181 LGAIAQSAATRNTRTMPDLQKTTLGDVVSGAREKLGSDKAVTREDAEGVIGAELRN 236


>IMGA|AC146744_17.4 Seed maturation protein
           chr03_pseudomolecule_IMGAG_V2 6632507-6634209 E
           EGN_Mt071002 20080227
          Length = 269

 Score =  160 bits (405), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/241 (46%), Positives = 137/241 (56%), Gaps = 10/241 (4%)

Query: 1   MSQEQPRRTQP---GQDPIKYGDVFPVSGDLAQKPVAPEDAAMMQSAETRVLGHTQPGGA 57
           MS  QP R Q     Q+PIKYG+VF VSGDLA + ++P+ AA M +AE  VLG  QPG  
Sbjct: 1   MSHGQPTRLQEEINNQEPIKYGEVFNVSGDLASETISPQAAANMAAAEFNVLGQAQPGSP 60

Query: 58  AAVMQSAATRNEQAG--LVGHRXXXXXXXXXXXXXXXXHVPGRRIITETVGGQVVGQFVE 115
           AA MQ+AA  NE +G  LVG                      RR++TE V GQ++G+ VE
Sbjct: 61  AAAMQAAALINEASGQCLVGRHGIAEMVKDHGIRVTETTAANRRVVTEAVDGQIIGRRVE 120

Query: 116 P----TPVQTGPIGAVRESAITIGEALEATAKTVGDKPVDQSDASAIQAAEVRATGSNEI 171
           P     P+  G   A+    ITIGEALEA   +VGDKPVDQ+DA AI AAE+RATG   +
Sbjct: 121 PDAHFVPMNMGS-AAIDGDPITIGEALEAAGISVGDKPVDQNDADAISAAEIRATGERCV 179

Query: 172 LPGGLXXXXXXXXXXXXECKSDQEKIKLADVLTGATAKLPADKAATLQDAEGVASAEVRN 231
            P G+                 +E  KL+DVLT AT KL AD+A T++DAE V  AEV  
Sbjct: 180 RPDGVGATAQSAATLNSHANRIEEMTKLSDVLTDATDKLAADRAVTIEDAEAVYDAEVHK 239

Query: 232 N 232
           N
Sbjct: 240 N 240


>IMGA|AC151598_69.5 Tubby; Cyclin-like F-box; Seed maturation
           protein chr02_pseudomolecule_IMGAG_V2 17691546-17682964
           H EGN_Mt071002 20080227
          Length = 684

 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 76/135 (56%), Gaps = 11/135 (8%)

Query: 4   EQPRRTQPGQDPIKYGDVFPVSGDLAQKPVAPEDAAMMQSAETRVLGHTQPGGAAAVMQS 63
           EQPRR +  Q+PIKYGDVF VSG+L+ +P+AP DAA MQSAE R  G T+  G A++M S
Sbjct: 490 EQPRRHE--QEPIKYGDVFNVSGELSSQPIAPRDAATMQSAEYRTFGQTRKDGPASLMTS 547

Query: 64  AATRNEQAGLVGHRXXXXXXXXXXXXXXXXHVPGRRIITETVG---GQVVGQFVE----- 115
           AA +NE AG + H                 +  G+R+ITET+    G + G  +E     
Sbjct: 548 AAQKNEDAGFIKHNTATNIARNEGVAVSETYDGGKRVITETLDRAKGNMAGDEMEDEGDP 607

Query: 116 -PTPVQTGPIGAVRE 129
            P   Q   +GA ++
Sbjct: 608 NPASAQAPKVGATKD 622



 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 26/179 (14%)

Query: 3   QEQPRRTQPGQDPIKYGDVFPVSGDLAQKPVAPEDAAMMQSAETRVLGHTQPGGAAAVMQ 62
           QE+PRR  P Q+PIKYGD+F VSGDL+ +P+AP DAA MQSAE R L H +  G A++M 
Sbjct: 368 QEKPRR--PEQEPIKYGDIFNVSGDLSSQPIAPRDAATMQSAEDRTLDHARKDGPASLMT 425

Query: 63  SAATRNEQAGLVGHRXXXXXXXXXXXXXXXXHVPGRRIITETVGGQVVGQFVEPTPVQTG 122
           SAA +NE AG + +                 +  G+R         V+G++ E      G
Sbjct: 426 SAAQKNEDAGFIDNNTATNIARNEGVAVSEINNGGKR---------VLGKYEEDADGAKG 476

Query: 123 PIGAVRESA--------------ITIGEALEATAKTVGDKPVDQSDASAIQAAEVRATG 167
              A  + A              I  G+    + + +  +P+   DA+ +Q+AE R  G
Sbjct: 477 TKDANSKHAGLRAEQPRRHEQEPIKYGDVFNVSGE-LSSQPIAPRDAATMQSAEYRTFG 534