Miyakogusa Predicted Gene

chr5.CM0357.270.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr5.CM0357.270.nc - phase: 0 
         (250 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC129091_3.5 Stem-specific protein TSJT1.  , related chr02_...   237   4e-63
IMGA|CT967306_42.4 Asparagine synthase chr03_pseudomolecule_IMGA...    42   2e-04

>IMGA|AC129091_3.5 Stem-specific protein TSJT1.  , related
           chr02_pseudomolecule_IMGAG_V2 3996029-3987151 E
           EGN_Mt071002 20080227
          Length = 251

 Score =  237 bits (604), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/249 (44%), Positives = 156/249 (62%), Gaps = 4/249 (1%)

Query: 1   MLAVFDKSVAKGPEALQSPQSNSVSALKDG--FLAQHFSSVYPGSVIVNLGTSGTLAYSL 58
           ML +F + +   P+ L SP SNS +  K     L    S     +  +  G    LAYS 
Sbjct: 1   MLGIFKEKLVNAPKELNSPASNSHTKAKPSHEILRDFMSCNSSNAFYMTFGNDALLAYSP 60

Query: 59  HKQNPLLPRLFAVVDDIFCLFQGHIQNVAHLKQQYGLNKTANEVIIVIEAYRTLRDRGPY 118
             +  +  RLF+ +D+I+C F G++ N++ L +QYGL+K  NE + +IEAYRTLRDRGPY
Sbjct: 61  SNKPSIHQRLFSGLDNIYCAFMGNLHNLSQLNKQYGLSKGGNEAMFIIEAYRTLRDRGPY 120

Query: 119 PAAQVVRDFQGKFTFVLFDSGSKTAFISSDDDGSVPFFWGTDADGNLVLSDETEIVAKSC 178
           PA QV++  +G F FV++D    T F +S  DG +  +WG  ADG++V+S+  E+V  SC
Sbjct: 121 PADQVLKGLEGSFAFVIYDHKDGTVFAASGSDGHIGLYWGIAADGSVVISENLELVKASC 180

Query: 179 GKSSAPFPKGCFFSTSGGLSSFEHPLNEMKAVPRVDSSGEMCGATFKVDADAKKETTGMP 238
            KS APFP GC F +  GL +FEHP  +MKA+PR+DS G MCGA F VD+ ++ +   MP
Sbjct: 181 AKSFAPFPTGCLFHSEHGLLNFEHPTKKMKAMPRIDSEGVMCGANFNVDSQSRNQM--MP 238

Query: 239 RVGSAANWS 247
           RVGS ANW+
Sbjct: 239 RVGSEANWA 247


>IMGA|CT967306_42.4 Asparagine synthase
           chr03_pseudomolecule_IMGAG_V2 25070617-25075109 E
           EGN_Mt071002 20080227
          Length = 570

 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 75  IFCLFQGHIQNVAHLKQQYGLN--KTANEVIIVIEAYRTLRDRGPYPAAQVVRDFQGKFT 132
           +     G I N   L+Q+   +  +T ++  ++   Y            + V    G F+
Sbjct: 70  VIVTVNGEIYNHKKLRQKLKSHQFRTGSDCEVIAHLYEEY-------GEEFVDMLDGMFS 122

Query: 133 FVLFDSGSKTAFISSDDDGSVPFFWGTDADGNLVLSDETEIVAKSCGKSSAPFPKGCFFS 192
           FVL D+  K+   + D  G  P + G   DG++  + E + +   C +    FP G  +S
Sbjct: 123 FVLLDTRDKSFIAARDAIGITPLYLGWGHDGSIWFASEMKALIDDC-EQFISFPPGHIYS 181

Query: 193 T-SGGLSSFEHPLNEMKAVP 211
           +  GGL  + +P    + +P
Sbjct: 182 SKQGGLRRWYNPPWFTEKIP 201