Miyakogusa Predicted Gene

chr5.CM0260.430.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr5.CM0260.430.nc - phase: 0 
         (806 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CT571261_24.5 U4/U6 small nuclear ribonucleoprotein Prp3 , ...   290   2e-78
IMGA|CT571261_39.5 small nuclear ribonucleoprotein family protei...    81   2e-15
IMGA|CT571261_41.5 hypothetical protein chr05_pseudomolecule_IMG...    77   4e-14

>IMGA|CT571261_24.5 U4/U6 small nuclear ribonucleoprotein Prp3 ,
           related chr05_pseudomolecule_IMGAG_V2 16095622-16094953
           E EGN_Mt071002 20080227
          Length = 215

 Score =  290 bits (742), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 151/223 (67%), Positives = 167/223 (74%), Gaps = 8/223 (3%)

Query: 499 IKEKLKDPIPEIEWWDLPLLQSGNYGDIADGSIDEDKLKMEKITFYVEHXXXXXXXXXXX 558
           +K KLKDPIP+IEWWD+ LL SGNY DIA+G+IDE  LKMEK  FYVEH           
Sbjct: 1   MKAKLKDPIPDIEWWDMALLHSGNYPDIANGTIDEGDLKMEKFDFYVEHPRPIEPPAEPA 60

Query: 559 XXXXXXXXXXXXXXXXXXXXXXIAKEKDRQEMIRQGVIEPPKPKVKISNLMKVLGAEATQ 618
                                 IAKEK+RQ     GV EPPKPK+K+SNL KVLG EATQ
Sbjct: 61  PPPPQPLKPTKQEQKKLRTQGRIAKEKERQ-----GVKEPPKPKIKMSNLHKVLGTEATQ 115

Query: 619 DPTRLEKEIRSAAAEREQAHIDRNIARKLTPAELREKKERKLFDDPNTVETLVSLYRIND 678
           DPTRLEKE+R+A AEREQAHIDRNIARKLTPAELREKK+RKLFD+PNT++TLVSLYR+N 
Sbjct: 116 DPTRLEKEVRNATAEREQAHIDRNIARKLTPAELREKKKRKLFDEPNTLDTLVSLYRVNG 175

Query: 679 LSHPKARFRVDVNAQENRLTGCAVISDGMSIVVVEGGSKSIKR 721
           LSHP ARFRV   AQENRLTGCAVI DG+SIVVVEGGSKSIKR
Sbjct: 176 LSHPNARFRV---AQENRLTGCAVICDGISIVVVEGGSKSIKR 215


>IMGA|CT571261_39.5 small nuclear ribonucleoprotein family protein
           , related chr05_pseudomolecule_IMGAG_V2
           16105442-16104550 H EGN_Mt071002 20080227
          Length = 242

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/44 (86%), Positives = 41/44 (93%)

Query: 390 LSTLKVNINKQKKDAFEILKPVLDVDPDSNPHFDPRMGVNKTKL 433
           LSTLKV INK KKDAFEILKPVLDVDP+SNPHFD RMG++KTKL
Sbjct: 179 LSTLKVIINKHKKDAFEILKPVLDVDPESNPHFDERMGIDKTKL 222


>IMGA|CT571261_41.5 hypothetical protein
           chr05_pseudomolecule_IMGAG_V2 16096304-16095755 H
           EGN_Mt071002 20080227
          Length = 60

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/45 (84%), Positives = 40/45 (88%), Gaps = 1/45 (2%)

Query: 356 IPQKPTKAPVLRLDAQGREIDEHGNVVNVTKPSNL-STLKVNINK 399
           IPQKPTKAPVLRLDAQGREIDEHGN VNVTKPSNL S+  +NI K
Sbjct: 11  IPQKPTKAPVLRLDAQGREIDEHGNFVNVTKPSNLSSSTLINIRK 55