Miyakogusa Predicted Gene

chr5.CM0200.950.nc

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr5.CM0200.950.nc + phase: 0 
         (966 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC123547_34.5 Zinc finger, FYVE/PHD-type; Homeodomain-relat...   212   5e-55
IMGA|AC146343_29.5 hypothetical protein chr07_pseudomolecule_IMG...    78   2e-14
IMGA|AC147714_14.4 Zinc finger, FYVE/PHD-type chr00_pseudomolecu...    49   1e-05
IMGA|AC202351_16.4 BRCT; Zinc finger, FYVE/PHD-type chr01_pseudo...    44   2e-04

>IMGA|AC123547_34.5 Zinc finger, FYVE/PHD-type; Homeodomain-related
           chr02_pseudomolecule_IMGAG_V2 10206326-10210357 H
           EGN_Mt071002 20080227
          Length = 646

 Score =  212 bits (540), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 99/208 (47%), Positives = 130/208 (62%), Gaps = 5/208 (2%)

Query: 399 DQFYKIKAHLRYLLNRVSYEQNLIDAYSGDGWKGYSMDKLKPDKEIQRAKSEILRRKLKI 458
           D   +++   R +L R+  EQNLIDAY+G+GWKG S +K++P+ E+QRAK +IL+ KL I
Sbjct: 135 DDTVRLQRRTRNILIRMKQEQNLIDAYAGEGWKGQSREKIRPEMELQRAKKQILKCKLSI 194

Query: 459 RDLFQNLDSLCAEGKFPESLFDSEGEIDSEDIFCSICQTKELSTDNDIILCDGACDRGFH 518
           RD    LDSL + G    S+  ++G +  E IFC+ C+  E+S DNDIILCDG C+R FH
Sbjct: 195 RDAIHQLDSLSSVGSIEGSVIATDGSVSHEHIFCANCKINEVSPDNDIILCDGTCNRAFH 254

Query: 519 QHCLDPPLLTEDIPPGDEGWLCPGCDCKDDCVDLLNDSLGTRLSLSDTWEKVFPEAAAVT 578
           Q CLDPPL TEDIPP D+GW C  CDCK + ++  N  LGTR  L  TW+ VF E AA+ 
Sbjct: 255 QRCLDPPLETEDIPPEDQGWFCKYCDCKIEILEATNAHLGTRFPLDSTWQDVFKEEAAIP 314

Query: 579 GN-----NMDQGLPXXXXXXXXYNPNGK 601
                  N ++  P        YNP  K
Sbjct: 315 DGDAALLNQEEEWPSDDPEDDDYNPERK 342



 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 35/157 (22%)

Query: 726 GKRNVERLDYKKLYDETYKSD------TSEDEEW---TASATPSRKKKLCGKMTPVSSDG 776
           G+R    +DYKKLYDE +  D       SEDE+W            + +   MT   S+ 
Sbjct: 403 GRRQRRAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPRKRRRREKESEAVNTLMTLHESEN 462

Query: 777 KASNNSRHTPERNTQQDKVENTNNSPTKSLEGCLESGSRDKKPRSSTRQRLGDVVVQRLH 836
           K  NN  +        D++   N+S  K    C                R     V++L 
Sbjct: 463 KYPNNKNN--------DRIRG-NSSGIK--RPCF---------------RFSHEAVEKLR 496

Query: 837 KSFKDNQYPDRATKESLAEELGLTFFQVDKWFGNARW 873
           + F +N+ P ++ K++L++ELGL   +V+KWF NAR+
Sbjct: 497 QVFAENELPPKSVKDALSKELGLDAAKVNKWFKNARY 533


>IMGA|AC146343_29.5 hypothetical protein
           chr07_pseudomolecule_IMGAG_V2 11656160-11655605 H
           EGN_Mt071002 20080227
          Length = 96

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 69/164 (42%), Gaps = 76/164 (46%)

Query: 272 TSDAVTGSVVADKTQSIPAQVNTSSVNELLDIPSRDVAEEVGSDSSERKSKSTTPSQLRH 331
            SDAVTG V  ++TQS+PAQ                                        
Sbjct: 1   MSDAVTGLVAEEQTQSVPAQ---------------------------------------- 20

Query: 332 IGKSNSKLSKKKYILRSLGSSDRALRSRTKEKPKAPEPSSNSVDV--------NNDGVXX 383
                      KYILR LGSSDRALRSR   KPK PEP +N  +          N+G+  
Sbjct: 21  -----------KYILRLLGSSDRALRSRD-NKPKPPEPINNVAETIERKKKKTRNEGINA 68

Query: 384 XXXXXXXXXXXXXXXDQFYKIKAHLRYLLNRVSYEQNLIDAYSG 427
                           QF +I+A LRY LNR+SYEQ+LIDAY G
Sbjct: 69  ----------------QFSRIRAQLRYYLNRISYEQSLIDAYCG 96


>IMGA|AC147714_14.4 Zinc finger, FYVE/PHD-type
           chr00_pseudomolecule_IMGAG_V2 7680179-7681547 E
           EGN_Mt071002 20080227
          Length = 322

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 480 DSEGEIDSEDIFCSICQTKELSTDNDIILCDGACDRGFHQHCLDPPLLTEDIPPGDEGWL 539
           D E E+D ++I C +C + + + ++ I+ CDG C+   H  C   PL+ + IP GD  W 
Sbjct: 118 DIEFEVDDDEILCCVCHSTDANAEDPIVFCDG-CNLMVHASCYGNPLVKQ-IPDGD--WF 173

Query: 540 CPGCDCKDDCVDLLNDSLGTRLSLSDTWE 568
           C  C  K+D +D   D+   R SL  T E
Sbjct: 174 CDQCRFKND-ID--TDTGPIRCSLCPTKE 199


>IMGA|AC202351_16.4 BRCT; Zinc finger, FYVE/PHD-type
            chr01_pseudomolecule_IMGAG_V2 21901494-21893899 E
            EGN_Mt071002 20080227
          Length = 1332

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 13/86 (15%)

Query: 470  AEGKFPESLFDSEGEIDSEDIFCSICQTKELSTDNDIILCDG------ACDRGFHQHCLD 523
            AE    E +   E + D +D+ C +C ++E     D++L  G       C  G H  C D
Sbjct: 1133 AEEIIEEVIPHEECDNDDDDVACQVCGSRE---RGDVMLICGDESGSVGCGVGTHIDCCD 1189

Query: 524  PPLLTEDIPPGDEGWLCPGCDCKDDC 549
            PPL    +P  +E W CP C     C
Sbjct: 1190 PPLAA--VP--EEDWFCPKCSSTQTC 1211