Miyakogusa Predicted Gene
- chr5.CM0200.1250.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr5.CM0200.1250.nc + phase: 0
(257 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|CU457801_18.3 Chain A, X-Ray Structure Of Protein From chr... 235 2e-62
IMGA|AC158501_42.4 Chain A, X-Ray Structure Of Protein From chr... 195 1e-50
IMGA|AC148651_46.5 Chain A, X-Ray Structure Of Protein From chr... 179 1e-45
IMGA|AC166038_59.4 Chain A, X-Ray Structure Of Protein From chr... 179 1e-45
IMGA|AC158501_27.4 Chain A, X-Ray Structure Of Protein From chr... 71 4e-13
>IMGA|CU457801_18.3 Chain A, X-Ray Structure Of Protein From
chr03_pseudomolecule_IMGAG_V2 30039305-30036891 H
EGN_Mt071002 20080227
Length = 241
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 126/231 (54%), Positives = 158/231 (68%), Gaps = 7/231 (3%)
Query: 29 MAGRGGVIKNPHHHPNKRWDGVVPPECHPDPSILRLSAALRWEPAHEPLHTDIDTKKVCG 88
MAGRGGV+ N WDGVVP +C P+PSI++L+A L+W AHEPLH DIDT K G
Sbjct: 1 MAGRGGVV-NDTTTGVTTWDGVVPLQCQPNPSIMKLNANLKWVEAHEPLHEDIDTLKTNG 59
Query: 89 VGPGMCFANAVRRRVG--GEFGLVPCAVGGTPMKEWARGEELYENMVKRAKFSVTGDHGG 146
VGPGM FA V + G GLVPCA+GGT + EW RG+ LY +M+KR K S+ D G
Sbjct: 60 VGPGMAFAKHVLEKNSGLGLVGLVPCAIGGTNISEWERGKVLYNHMMKRVKASLRDD--G 117
Query: 147 EIKALLWFQGESDTSSEHDAEAYKVNMETLIHNVRQDLNLPSLPIIQVAIASGF-EYMEK 205
I+ALLWFQGE+DT S DA++Y+ + +VR DL P LPIIQVA+ASG Y+E
Sbjct: 118 NIRALLWFQGETDTVSLTDAQSYQARVHKFFLDVRDDLQSPLLPIIQVALASGSGPYIEI 177
Query: 206 VREAQKGIELPNVICVDAKGFQLKEDNLHLTLEAQVKLGHMLAEAYLTHFV 256
VR+AQ GI+L N+ VDAKG L+ D LHL+ AQV LG ++A+A+L FV
Sbjct: 178 VRQAQLGIDLLNLKTVDAKGLPLQPDRLHLSTPAQVDLGKIMADAFL-QFV 227
>IMGA|AC158501_42.4 Chain A, X-Ray Structure Of Protein From
chr01_pseudomolecule_IMGAG_V2 6417323-6418008 H
EGN_Mt071002 20080227
Length = 169
Score = 195 bits (496), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/167 (58%), Positives = 117/167 (70%), Gaps = 10/167 (5%)
Query: 29 MAGRGGVIKNPHHHPNKRWDGVVPPECHPDPSILRLSAALRWEPAHEPLHTDIDTKKVCG 88
MAGRGGV+ N +WDG +PPEC P+PSIL+L+ L+WE AHEPLH DID K CG
Sbjct: 1 MAGRGGVL-------NGKWDGNIPPECKPNPSILKLNTKLKWEEAHEPLHADIDVGKTCG 53
Query: 89 VGPGMCFANAVRRRVGGE--FGLVPCAVGGTPMKEWARGEELYENMVKRAKFSVTGDHGG 146
+GPG+ FAN V R GGE GLVPCAVGGT ++EW G LY +V+R+ SV D G
Sbjct: 54 IGPGLAFANEVVRMSGGECVVGLVPCAVGGTRIEEWRNGSHLYNELVRRSIESVK-DGDG 112
Query: 147 EIKALLWFQGESDTSSEHDAEAYKVNMETLIHNVRQDLNLPSLPIIQ 193
I+A+LW+QGESDT E DAE YK ME LI N+R DL LPSL +IQ
Sbjct: 113 VIRAVLWYQGESDTVREEDAERYKYRMENLIENLRLDLQLPSLLVIQ 159
>IMGA|AC148651_46.5 Chain A, X-Ray Structure Of Protein From
chr04_pseudomolecule_IMGAG_V2 7167597-7168530 H
EGN_Mt071002 20080227
Length = 166
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/168 (55%), Positives = 113/168 (67%), Gaps = 4/168 (2%)
Query: 29 MAGRGGVIKNPHHHPNKRWDGVVPPECHPDPSILRLSAALRWEPAHEPLHTDIDTKKVCG 88
M GRGGV+ N WD VVPP+ P+PSIL+L+A L W A EPLH DIDT K G
Sbjct: 1 MGGRGGVV-NDTTTGVATWDSVVPPQSQPNPSILKLNAHLEWVEAQEPLHEDIDTLKTNG 59
Query: 89 VGPGMCFANAV-RRRVG-GEFGLVPCAVGGTPMKEWARGEELYENMVKRAKFSVTGDHGG 146
+GPGM FAN V + +G G GLVPCA GGT + EW RG+ LY+NM+KR K S+ D GG
Sbjct: 60 IGPGMVFANHVLEKNLGFGLVGLVPCATGGTNISEWERGKVLYKNMMKRVKASLL-DDGG 118
Query: 147 EIKALLWFQGESDTSSEHDAEAYKVNMETLIHNVRQDLNLPSLPIIQV 194
I+ALLWFQGE+DT S DA++Y+ + +VR DL P LPIIQV
Sbjct: 119 NIQALLWFQGETDTVSLSDAQSYQTRVHKFFLDVRDDLQSPLLPIIQV 166
>IMGA|AC166038_59.4 Chain A, X-Ray Structure Of Protein From
chr04_pseudomolecule_IMGAG_V2 7113764-7112831 H
EGN_Mt071002 20080227
Length = 166
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/168 (55%), Positives = 113/168 (67%), Gaps = 4/168 (2%)
Query: 29 MAGRGGVIKNPHHHPNKRWDGVVPPECHPDPSILRLSAALRWEPAHEPLHTDIDTKKVCG 88
M GRGGV+ N WD VVPP+ P+PSIL+L+A L W A EPLH DIDT K G
Sbjct: 1 MGGRGGVV-NDTTTGVATWDSVVPPQSQPNPSILKLNAHLEWVEAQEPLHEDIDTLKTNG 59
Query: 89 VGPGMCFANAV-RRRVG-GEFGLVPCAVGGTPMKEWARGEELYENMVKRAKFSVTGDHGG 146
+GPGM FAN V + +G G GLVPCA GGT + EW RG+ LY+NM+KR K S+ D GG
Sbjct: 60 IGPGMVFANHVLEKNLGFGLVGLVPCATGGTNISEWERGKVLYKNMMKRVKASLL-DDGG 118
Query: 147 EIKALLWFQGESDTSSEHDAEAYKVNMETLIHNVRQDLNLPSLPIIQV 194
I+ALLWFQGE+DT S DA++Y+ + +VR DL P LPIIQV
Sbjct: 119 NIQALLWFQGETDTVSLSDAQSYQTRVHKFFLDVRDDLQSPLLPIIQV 166
>IMGA|AC158501_27.4 Chain A, X-Ray Structure Of Protein From
chr01_pseudomolecule_IMGAG_V2 6419340-6419567 H
EGN_Mt071002 20080227
Length = 75
Score = 71.2 bits (173), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Query: 192 IQVAIASG-FEYMEKVREAQKGIELPNVICVDAKGFQLKEDNLHLTLEAQVKLGHMLAEA 250
+QVA+ASG +++EKVR AQ GI+LPNV CVDAKG LK D LHLT ++V LG LA A
Sbjct: 1 MQVALASGEGKFIEKVRHAQLGIKLPNVKCVDAKGLHLKTDKLHLTTMSEVHLGIKLAHA 60
Query: 251 YL 252
Y
Sbjct: 61 YF 62