Miyakogusa Predicted Gene

chr5.CM0095.210.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr5.CM0095.210.nd + phase: 0 /pseudo/partial
         (470 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC140030_34.5 hypothetical protein chr04_pseudomolecule_IMG...    50   2e-06

>IMGA|AC140030_34.5 hypothetical protein
           chr04_pseudomolecule_IMGAG_V2 21810341-21810529 H
           EGN_Mt071002 20080227
          Length = 62

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 294 NRSLDPDLSPPRKNSKELSIPASVNERKTGLLSSKDIRNEIDKKKKDDML 343
           N +LD DLSPPRKN +E  IPASVNERK+GL+S K++R++ID+KKKDDML
Sbjct: 9   NTNLDRDLSPPRKNPEEPFIPASVNERKSGLISVKELRDKIDRKKKDDML 58