Miyakogusa Predicted Gene
- chr5.CM0062.40.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr5.CM0062.40.nd - phase: 0 /partial
(136 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC130801_43.4 Sodium/hydrogen exchanger chr07_pseudomolecul... 145 5e-36
IMGA|AC147364_39.5 Sodium/hydrogen exchanger chr08_pseudomolecul... 120 2e-28
IMGA|AC188382_52.4 Sodium/hydrogen exchanger chr01_pseudomolecul... 82 5e-17
IMGA|AC174299_29.4 Sodium/hydrogen exchanger 1 , related chr01_p... 79 8e-16
IMGA|CT573353_40.4 Sodium/hydrogen exchanger chr03_pseudomolecul... 75 1e-14
IMGA|AC188382_53.4 Sodium/hydrogen exchanger chr01_pseudomolecul... 73 4e-14
IMGA|AC174299_33.4 Sodium/hydrogen exchanger chr01_pseudomolecul... 72 7e-14
>IMGA|AC130801_43.4 Sodium/hydrogen exchanger
chr07_pseudomolecule_IMGAG_V2 30707661-30711064 E
EGN_Mt071002 20080227
Length = 505
Score = 145 bits (366), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 96/143 (67%), Gaps = 7/143 (4%)
Query: 1 MSGHTSLRSNAIMXXXXXXXXXXXXXXFGMLTKPLIRLLLP--HTDTKTDSMASLDPSTP 58
MSGHT L+ NAIM FGM+TKPLIR L+P H + +S+A+L+ S+P
Sbjct: 362 MSGHTQLQFNAIMITSTITVVLVSTMVFGMMTKPLIRFLIPLGHPPKQKNSLANLEESSP 421
Query: 59 KSFTVPLLGSAQDS-----VGDFDAHEIRRPSSIRALLSTPTHTVHRLWRKFDNSFMRPV 113
KS TVP LG QDS D DA++ RPSSIR LL+TPTHTVHRLWRKFD++ MRPV
Sbjct: 422 KSITVPFLGGRQDSEEVDNDNDNDANDSHRPSSIRDLLTTPTHTVHRLWRKFDDAIMRPV 481
Query: 114 FGGRGFVPVEPGSPSDRSNGHQW 136
FGGRGFVPV P SP++ QW
Sbjct: 482 FGGRGFVPVVPTSPTESDCQLQW 504
>IMGA|AC147364_39.5 Sodium/hydrogen exchanger
chr08_pseudomolecule_IMGAG_V2 28582118-28578304 E
EGN_Mt071002 20080227
Length = 529
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 79/125 (63%), Gaps = 4/125 (3%)
Query: 3 GHTSLRSNAIMXXXXXXXXXXXXXXFGMLTKPLIRLLLPHTDTKTDSMASLDPSTPKSFT 62
GHT LR NAIM FG++TKPL+RLLLP + PS+PKSF+
Sbjct: 408 GHTKLRENAIMITSTITVVLFSTVVFGLMTKPLVRLLLP-SSKHIIISIPSPPSSPKSFS 466
Query: 63 VPLLGSAQDSVGDFDAHEIRRPSSIRALLSTPTHTVHRLWRKFDNSFMRPVFGGRGFVPV 122
VPLLG+ +D G+ +RPS +R LL P+H VH WRKFD+SFMRPVFGGRGFVP
Sbjct: 467 VPLLGNGEDVGGNGGT---QRPSRLRTLLRIPSHGVHHYWRKFDDSFMRPVFGGRGFVPY 523
Query: 123 EPGSP 127
PGSP
Sbjct: 524 VPGSP 528
>IMGA|AC188382_52.4 Sodium/hydrogen exchanger
chr01_pseudomolecule_IMGAG_V2 20187531-20191613 E
EGN_Mt071002 20080227
Length = 483
Score = 82.4 bits (202), Expect = 5e-17, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 6 SLRSNAIMXXXXXXXXXXXXXXFGMLTKPLIRLLLPHTDTKTDSMASLDPSTPKSFTVPL 65
S +A+M FG +TKPLI + + K A D + + L
Sbjct: 359 SAEDSALMITSTIILVVFSTVVFGSITKPLIEAV----NLKHSKPAISDSTDNQEDLRLL 414
Query: 66 LGSAQDSVGDFDAHEIRRPSSIRALLSTPTHTVHRLWRKFDNSFMRPVFGGRGFVPVEPG 125
L + S+ RR S++ ++ PT TVH WRKFD+ FMRPVFGGRGFVPV PG
Sbjct: 415 LLESNSSINQSINQSNRRRSNLSLMMRYPTTTVHYFWRKFDDKFMRPVFGGRGFVPVVPG 474
Query: 126 SP 127
SP
Sbjct: 475 SP 476
>IMGA|AC174299_29.4 Sodium/hydrogen exchanger 1 , related
chr01_pseudomolecule_IMGAG_V2 20284189-20284965 E
EGN_Mt071002 20080227
Length = 134
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 2 SGHTSLRSNAIMXXXXXXXXXXXXXXFGMLTKPLIRLLLPHTDTKTDSMASLDPSTPKSF 61
S S +A+M FG +TKPLI + + K A D + +
Sbjct: 6 SDIASAEDSALMITSTIILVVFSTVVFGSITKPLIEAV----NLKHSKPAISDSTDNQED 61
Query: 62 TVPLLGSAQDSVGDFDAHEIRRPSSIRALLSTPTHTVHRLWRKFDNSFMRPVFGGRGFVP 121
LL + S+ RR S++ ++ PT TVH WRKFD+ FMRPVFGGRGFVP
Sbjct: 62 LRLLLLESNSSINQSINQSNRRRSNLSLMMRYPTTTVHYFWRKFDDKFMRPVFGGRGFVP 121
Query: 122 VEPGSP 127
V PGSP
Sbjct: 122 VVPGSP 127
>IMGA|CT573353_40.4 Sodium/hydrogen exchanger
chr03_pseudomolecule_IMGAG_V2 12243697-12237983 E
EGN_Mt071002 20080227
Length = 498
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 2 SGHTSLRSNAIMXXXXXXXXXXXXXXFGMLTKPLIRLLLPHTDTKTDSMASLDPSTPKSF 61
SG TS NA M FG LTKPL+R LLPH T+ ++ S +
Sbjct: 380 SGVTSDPVNATMITITIIVVLFTTLVFGCLTKPLVRYLLPHHATRVNTNHEESTSPVEDM 439
Query: 62 TVPLLGSAQDSVGDFDAHEIRRPSSIRALLSTPTHTVHRLWRKFDNSFMRPVFGG 116
+PLL + + + R S+ L +P +T+H WR+FD+S+MRP+FGG
Sbjct: 440 NLPLLSFEESAATNIS----RAKESLSMLFESPVYTIHYYWRRFDDSYMRPLFGG 490
>IMGA|AC188382_53.4 Sodium/hydrogen exchanger
chr01_pseudomolecule_IMGAG_V2 20192639-20196250 H
EGN_Mt071002 20080227
Length = 503
Score = 73.2 bits (178), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 2 SGHTSLRSNAIMXXXXXXXXXXXXXXFGMLTKPLIR-LLLPHTDTKTDSMASLDPSTPKS 60
S TS +A+M FG +TKPLI +LL H+ T A
Sbjct: 380 SETTSQEDSALMITSTITLVLFSTMVFGSITKPLIEAVLLKHSKQTTSDSADYHEELGLL 439
Query: 61 FTVPLLGSAQDSVGDFDAHEIRRPSSIRALLSTPTHTVHRLWRKFDNSFMRPVFGGRGFV 120
F + DS+ + +R ++ P TVH WR+FD++FMRP+FGG GFV
Sbjct: 440 FL-----ESNDSIEQSNNQPF-----LRWMMRYPATTVHYFWRQFDDNFMRPIFGGWGFV 489
Query: 121 PVEPGSP 127
PV PG+P
Sbjct: 490 PVVPGTP 496
>IMGA|AC174299_33.4 Sodium/hydrogen exchanger
chr01_pseudomolecule_IMGAG_V2 20285991-20289602 H
EGN_Mt071002 20080227
Length = 503
Score = 72.0 bits (175), Expect = 7e-14, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 8 RSNAIMXXXXXXXXXXXXXXFGMLTKPLIR-LLLPHTDTKTDSMASLDPSTPKSFTVPLL 66
+ +A+M FG +TKPLI +LL H+ T A F
Sbjct: 386 KDSALMITSTITLVLFSTMVFGSITKPLIEAVLLKHSKQTTSDSADYHEELGLLFL---- 441
Query: 67 GSAQDSVGDFDAHEIRRPSSIRALLSTPTHTVHRLWRKFDNSFMRPVFGGRGFVPVEPGS 126
+ DS+ + +R ++ P TVH WR+FD++FMRP+FGG GFVPV PG+
Sbjct: 442 -ESNDSIEQSNNQPF-----LRWMMRYPATTVHYFWRQFDDNFMRPIFGGWGFVPVVPGT 495
Query: 127 P 127
P
Sbjct: 496 P 496