Miyakogusa Predicted Gene
- chr5.CM0052.230.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr5.CM0052.230.nd + phase: 0
(441 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC150978_38.4 RNA-binding region RNP-1 (RNA recognition mot... 810 0.0
IMGA|CT963079_1.5 RNA-binding region RNP-1 (RNA recognition moti... 147 1e-35
IMGA|AC122724_35.5 RNA-binding region RNP-1 (RNA recognition mot... 133 1e-31
IMGA|AC140025_37.5 RNA-binding region RNP-1 (RNA recognition mot... 93 2e-19
IMGA|AC140025_44.5 RNA-binding region RNP-1 (RNA recognition mot... 46 3e-05
IMGA|AC202362_16.3 RNA-binding region RNP-1 (RNA recognition mot... 46 3e-05
IMGA|AC144483_30.5 RNA-binding region RNP-1 (RNA recognition mot... 45 7e-05
IMGA|AC135465_37.4 RNA-binding region RNP-1 (RNA recognition mot... 45 9e-05
IMGA|AC202500_12.4 RNA-binding region RNP-1 (RNA recognition mot... 44 2e-04
IMGA|AC152402_23.4 RNA-binding region RNP-1 (RNA recognition mot... 44 2e-04
IMGA|AC122728_50.4 Polyadenylate binding protein, human types 1,... 43 3e-04
>IMGA|AC150978_38.4 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 26967108-26973536 E
EGN_Mt071002 20080227
Length = 443
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/443 (88%), Positives = 417/443 (94%), Gaps = 2/443 (0%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMDDVSSAVTAIQF 60
M EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQAL+QM DV SAV+A+ F
Sbjct: 1 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVSALHF 60
Query: 61 YANMQPSIRGRNVYVQFSSHQELTTVDQSQGRGDEPNRILLVTIHHMLYPMTVDVLYQVF 120
Y N QPSIRGRNVYVQFSSHQELTT+DQSQGRGDEPNRILLVTIHH+LYP+TVDVLYQVF
Sbjct: 61 YGNTQPSIRGRNVYVQFSSHQELTTIDQSQGRGDEPNRILLVTIHHVLYPITVDVLYQVF 120
Query: 121 SPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNIYDGCCQLDIQFSNLDELQ 180
SPHGSVEKIVTFQKSAGFQALIQYQS+QS++TAR+ALQGRNIYDGCCQLDIQFSNLDELQ
Sbjct: 121 SPHGSVEKIVTFQKSAGFQALIQYQSQQSSITARTALQGRNIYDGCCQLDIQFSNLDELQ 180
Query: 181 VNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDGGNMYPAQGSGARGGGI--MGNASAIAAA 238
VNYNNDRSRDFTNPNLPTEQKGRP Q GYGD GNMY QGSG R G M NA+AIAAA
Sbjct: 181 VNYNNDRSRDFTNPNLPTEQKGRPPQLGYGDAGNMYGVQGSGPRTVGYPQMPNAAAIAAA 240
Query: 239 FGGGLPPGITGTNDRCTILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQM 298
FGGGLPPGITGTNDRCT+LVSNLNPDR+DEDKLFNLFS+YGNIVRIKLLRNKPDHALIQM
Sbjct: 241 FGGGLPPGITGTNDRCTLLVSNLNPDRIDEDKLFNLFSLYGNIVRIKLLRNKPDHALIQM 300
Query: 299 GDGFQAELAVHFLKGAILFGKPLEVNFSKHATITQGADTHEYSNSNLNRFNRNAAKNYRY 358
GDGFQAELAVHFLKGA+LF K LEVNFSKH ITQGADTH+YSNSNLNRFNRNAAKNYRY
Sbjct: 301 GDGFQAELAVHFLKGAMLFDKRLEVNFSKHPNITQGADTHDYSNSNLNRFNRNAAKNYRY 360
Query: 359 CCSPTRMIHLSTLPQDVTEEEIASLVEEHGTIVNCKVFEMNQKKQALVQFETEEQATEAL 418
CCSPT+MIHLSTLPQD+TE+EI +L+EEHGTIVN KVFEMN KKQ LVQFETE+QATEAL
Sbjct: 361 CCSPTKMIHLSTLPQDITEDEIVTLLEEHGTIVNSKVFEMNGKKQGLVQFETEDQATEAL 420
Query: 419 VCKHATSLSGSVIRISFSQLQNI 441
VCKHATSLSGSVIRIS+SQLQNI
Sbjct: 421 VCKHATSLSGSVIRISYSQLQNI 443
>IMGA|CT963079_1.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 26484831-26490357 E
EGN_Mt071002 20080227
Length = 504
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/345 (31%), Positives = 178/345 (51%), Gaps = 49/345 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMDDVSSAVTAIQFY 61
PSKV+H+RN+ E +E +L++L PFG + TK + +NQA ++ D++ A+ I +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGNPFGKVVNTKCNVGSNRNQAFIEFADLNQAIAMISYY 75
Query: 62 ANM-QPS-IRGRNVYVQFSSHQELTTVDQSQGRGDEPNRILLVTIH-HMLYPMTVDVLYQ 118
A+ +P+ +RG+ VY+Q+S+ QE+ ++ D +LLVT+ +++DVL+
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIV---HNKTAADVAGNVLLVTVEGEDARLVSIDVLHL 132
Query: 119 VFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNI-------YDGCCQLDI 171
VFS G V KI TF+K+AGFQAL+Q+ ++A +A+ AL GR+I + G C L I
Sbjct: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLSEHVGPCTLKI 192
Query: 172 QFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDGGNMYPAQGSGARGGGIMGN 231
+S +L V + + RSRD+TNP LP Q S GGG
Sbjct: 193 TYSGHSDLTVKFQSHRSRDYTNPYLPVAQ--------------------SAIEGGG---- 228
Query: 232 ASAIAAAFGGGLPPGITGTNDRCTILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLL-RNK 290
+ G + ++ + N+ V D L +FS +G I +I + +N
Sbjct: 229 --QVMIGLDGKR---LEAESNVLLASIENMQ-YAVTLDVLHMVFSAFGPIQKIAMFDKNG 282
Query: 291 PDHALIQMGDGFQAELAVHFLKGAILFGK---PLEVNFSKHATIT 332
ALIQ D A +A L+G ++ L +++S+H ++
Sbjct: 283 GLQALIQYPDTQTAVVAKEALEGHCIYDGGFCKLHLSYSRHTDLS 327
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 107/224 (47%), Gaps = 54/224 (24%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMDDVSSAVTAIQFYANMQPSIRGRNV---- 73
D+L L F FG + K+ A QAL+Q D +A +A + ++ GR++
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSA-------KDALDGRSIPRYL 180
Query: 74 ----------YVQFSSHQELTTVDQSQGRGDEPN-------------------------- 97
+ +S H +LT QS D N
Sbjct: 181 LSEHVGPCTLKITYSGHSDLTVKFQSHRSRDYTNPYLPVAQSAIEGGGQVMIGLDGKRLE 240
Query: 98 ---RILLVTIHHMLYPMTVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTAR 154
+LL +I +M Y +T+DVL+ VFS G ++KI F K+ G QALIQY Q+AV A+
Sbjct: 241 AESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGLQALIQYPDTQTAVVAK 300
Query: 155 SALQGRNIYD-GCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLP 197
AL+G IYD G C+L + +S +L + NNDRSRD+T P +P
Sbjct: 301 EALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPMIP 344
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 351 NAAKNYRYCCSPTRMIHLSTLPQDVTEEEIASLVEEHGTIVNCKVFEMNQKKQALVQFET 410
++ + +RY P++++HL LP + TEEE+ L G +VN K + + QA ++F
Sbjct: 5 SSQQQFRYTQPPSKVLHLRNLPWECTEEELIELGNPFGKVVNTKCNVGSNRNQAFIEFAD 64
Query: 411 EEQATEALVCKHATS-----LSGSVIRISFSQLQNI 441
QA A++ +A+S + G + + +S Q I
Sbjct: 65 LNQAI-AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
>IMGA|AC122724_35.5 RNA-binding region RNP-1 (RNA recognition motif)
chr06_pseudomolecule_IMGAG_V2 1900580-1896110 H
EGN_Mt071002 20080227
Length = 428
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 168/339 (49%), Gaps = 60/339 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMDDVSSAVTAIQFY 61
PSKV+H RN+ E S+ +L L PFG + TK + +NQA +Q +++ A++ + +Y
Sbjct: 16 PSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQFAELNQAISMVSYY 75
Query: 62 ANM-QPS-IRGRNVYVQFSSHQELTTVDQSQGRGDEPNRILLVTIHHM-LYPMTVDVLYQ 118
A+ +P+ +RG+ VY+Q+S+ + S GD P +LLVTI + +++DV++
Sbjct: 76 ASSSEPAQVRGKTVYIQYSNRHHIVN---SNSPGDIPGNVLLVTIEGVEAGDVSIDVIHL 132
Query: 119 VFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNIYDGCCQLDIQFSNLDE 178
VFS G V K+ TF+K+AGFQALIQY L ++ G C L I +S +
Sbjct: 133 VFSAFGFVHKLATFEKTAGFQALIQY------------LLPEHV--GACNLRISYSAHRD 178
Query: 179 LQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDGGNMYPAQGSGARGGGIMGNASAIAAA 238
L + + ++RSRD+TNP LP Q +AI +A
Sbjct: 179 LNIKFQSNRSRDYTNPMLPVNQ--------------------------------AAIDSA 206
Query: 239 FGGGLPPGITGTNDRCTILVSNLNPDR--VDEDKLFNLFSIYGNIVRIKLL-RNKPDHAL 295
+ P + +L++ + + V D L ++FS +G + ++ + +N HAL
Sbjct: 207 LQPAIGPDGKRKEHKSNVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHAL 266
Query: 296 IQMGDGFQAELAVHFLKGAILFGK---PLEVNFSKHATI 331
IQ D A A L+G ++ L + +S+H +
Sbjct: 267 IQYPDLTIAAAAKETLEGHCIYDGGYCKLHLTYSRHTDL 305
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 102/208 (49%), Gaps = 35/208 (16%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQM---DDVSSAVTAIQFYANMQPSIRGRNVY 74
D++ L F FG + KL A QAL+Q + V + I + A+ R++
Sbjct: 128 DVIHLVFSAFGFVHKLATFEKTAGFQALIQYLLPEHVGACNLRISYSAH-------RDLN 180
Query: 75 VQFSSHQE------LTTVDQSQ-------------GRGDEPNRILLVTIHHMLYPMTVDV 115
++F S++ + V+Q+ R + + +LL TI +M Y + +DV
Sbjct: 181 IKFQSNRSRDYTNPMLPVNQAAIDSALQPAIGPDGKRKEHKSNVLLATIENMQYAVPLDV 240
Query: 116 LYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNIYD-GCCQLDIQFS 174
L+ VFS G V+K+ F K+ ALIQY A A+ L+G IYD G C+L + +S
Sbjct: 241 LHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAKETLEGHCIYDGGYCKLHLTYS 300
Query: 175 NLDELQVNYNNDRSRDFT--NPNLPTEQ 200
+L V +D+SRD+T +P+L Q
Sbjct: 301 RHTDLNVKAFSDKSRDYTVLDPSLHAAQ 328
>IMGA|AC140025_37.5 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 1984087-1979723 E
EGN_Mt071002 20080227
Length = 376
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 107/243 (44%), Gaps = 48/243 (19%)
Query: 17 ISENDLLQLFQPFGVITKLVMLR--AKNQALLQMDDVSSAVTAI----------QFYANM 64
I ++F FG + K+ A QAL+Q D +A +A Q Y +
Sbjct: 6 IHVTSFSRVFSAFGFVHKIATFEKTAGFQALIQFTDAETAASARDALDGRSIPRQNYFCI 65
Query: 65 QPSIRGRNVYVQFSSHQELTTVDQSQGRGDEPN--------------------------- 97
+ N+ + +S+H++L QS D N
Sbjct: 66 SQHVGSCNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNHSAIEGAAQPAIGPDGKRIET 125
Query: 98 --RILLVTIHHMLYPMTVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARS 155
+LL +I +M Y +TVDV+ VFS G+V+KI F+K+ QALIQY +A AR
Sbjct: 126 ESNVLLASIENMQYAVTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQYPDVTTAAAARE 185
Query: 156 ALQGRNIYD-GCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDGGN 214
AL+G IYD G C+L + +S +L V +D+SRD+T P +P P
Sbjct: 186 ALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPLVPAPVWQNP------QAAP 239
Query: 215 MYP 217
MYP
Sbjct: 240 MYP 242
>IMGA|AC140025_44.5 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 1988402-1984970 H
EGN_Mt071002 20080227
Length = 242
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 356 YRYCCSPTRMIHLSTLPQDVTEEEIASLVEEHGTIVNCKVFEMNQKKQALVQFETEEQAT 415
+RY +P++++HL LP + +EEE+ L G IVN K + QA V+F
Sbjct: 11 FRYTQTPSKVLHLRNLPWECSEEELVELCSPFGRIVNTKCNVGANRNQAFVEFVLYPCLA 70
Query: 416 EALVCK--HATSLSGSV 430
EA V HA +L V
Sbjct: 71 EAYVSAMGHAFNLKERV 87
>IMGA|AC202362_16.3 RNA-binding region RNP-1 (RNA recognition
motif); Calcium-binding EF-hand
chr01_pseudomolecule_IMGAG_V2 218619-221289 E
EGN_Mt071002 20080227
Length = 311
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 27/191 (14%)
Query: 256 ILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLLRNKPDH-----ALIQMGDGFQAELAVHF 310
+ V NL P + +L LF GN+V +++L + + A + MG+ AE A+
Sbjct: 110 LFVGNL-PFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 311 LKGAILFGKPLEVNFSKHATITQGADTHEYSNSNLNRFNRNAAKNYR-YCCSPTRMIHLS 369
G + G+ ++VNF + + + YR Y SP + I+
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGKRVQM---------------GSTYRGYVDSPHK-IYAG 212
Query: 370 TLPQDVTEEEIASLVEEHGTIVNCK-VFEMNQKKQ---ALVQFETEEQATEALVCKHATS 425
L D+T + + + +++ K V+E N K V FET E AL +
Sbjct: 213 NLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVE 272
Query: 426 LSGSVIRISFS 436
+ G +R+ +
Sbjct: 273 VQGRPLRLKLA 283
>IMGA|AC144483_30.5 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 31240580-31235784 E
EGN_Mt071002 20080227
Length = 402
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 235 IAAAFGGGLPPGITGTNDRCTILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLLRN-KPDH 293
I G LPPG + R ++ V N++P +V E L LFS G + KL+R K +
Sbjct: 28 IEPILSGNLPPGFDSSTCR-SVYVGNIHP-QVSEPLLQELFSSAGALEGCKLIRKEKSSY 85
Query: 294 ALIQMGDGFQAELAVHFLKGAILFGKPLEVNFS 326
+ D A +A+ L G +FG+ ++VN++
Sbjct: 86 GFVDYFDRSSAAIAIVTLNGRNIFGQSIKVNWA 118
>IMGA|AC135465_37.4 RNA-binding region RNP-1 (RNA recognition
motif); WW/Rsp5/WWP chr07_pseudomolecule_IMGAG_V2
29425781-29433309 H EGN_Mt071002 20080227
Length = 498
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 21/194 (10%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMDDVSSAVTAIQFY 61
++V V SE D+ +FQ +G I ++V+LR K L++ A AI+
Sbjct: 76 VYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKAL 135
Query: 62 ANMQPSIRGRN--VYVQFSSHQE----LTTVDQSQGRGDEPNRILLVTIHHMLYPMTVDV 115
+N Q + G + V V+F+ + L Q+ R D P + V + + +
Sbjct: 136 SN-QYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQE 194
Query: 116 LYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNIYDGCCQ-LDIQFS 174
+ ++FSP+G +E +V ++ G+ +++ +R+ A+ A L GC Q L ++F+
Sbjct: 195 IEEIFSPYGHIEDVVVL-RNRGY-GFVKFYNREMALAAIKGLDRTFTMRGCDQPLIVRFA 252
Query: 175 N-----LDELQVNY 183
+ EL+ NY
Sbjct: 253 EPKKPRMGELRGNY 266
>IMGA|AC202500_12.4 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 34397955-34393689 F
EGN_Mt071002 20080227
Length = 411
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 80/189 (42%), Gaps = 17/189 (8%)
Query: 255 TILVSNLNPDRVDEDKLFNLFSI-YGNIVRIKLLRNK-----PDHALIQMGDGFQAELAV 308
TI V +L D V + L +F Y ++ K++ ++ + ++ D + A+
Sbjct: 168 TIFVGDLAAD-VSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAM 226
Query: 309 HFLKGAILFGKPLEVNFSKHATITQGADTHEYSNSNLNRFNRNAAKNYRYCCSPTRMIHL 368
++G + +P+ + + + + Y N N N N I +
Sbjct: 227 TEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNN--------TTIFV 278
Query: 369 STLPQDVTEEEIASLVEEHGTIVNCKVFEMNQKKQALVQFETEEQATEALVCKHATSLSG 428
L +VT+E + + ++G +V+ K+ + K+ VQF A EAL + T L G
Sbjct: 279 GNLDPNVTDEHLKQVFTQYGELVHVKI--PSGKRCGFVQFADRSSAEEALRVLNGTLLGG 336
Query: 429 SVIRISFSQ 437
+R+S+ +
Sbjct: 337 QNVRLSWGR 345
>IMGA|AC152402_23.4 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 34279564-34283829 F
EGN_Mt071002 20080227
Length = 411
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 80/189 (42%), Gaps = 17/189 (8%)
Query: 255 TILVSNLNPDRVDEDKLFNLFSI-YGNIVRIKLLRNK-----PDHALIQMGDGFQAELAV 308
TI V +L D V + L +F Y ++ K++ ++ + ++ D + A+
Sbjct: 168 TIFVGDLAAD-VSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAM 226
Query: 309 HFLKGAILFGKPLEVNFSKHATITQGADTHEYSNSNLNRFNRNAAKNYRYCCSPTRMIHL 368
++G + +P+ + + + + Y N N N N I +
Sbjct: 227 TEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNN--------TTIFV 278
Query: 369 STLPQDVTEEEIASLVEEHGTIVNCKVFEMNQKKQALVQFETEEQATEALVCKHATSLSG 428
L +VT+E + + ++G +V+ K+ + K+ VQF A EAL + T L G
Sbjct: 279 GNLDPNVTDEHLKQVFTQYGELVHVKI--PSGKRCGFVQFADRSSAEEALRVLNGTLLGG 336
Query: 429 SVIRISFSQ 437
+R+S+ +
Sbjct: 337 QNVRLSWGR 345
>IMGA|AC122728_50.4 Polyadenylate binding protein, human types 1, 2,
3, 4 chr03_pseudomolecule_IMGAG_V2 29868052-29861846 E
EGN_Mt071002 20080227
Length = 414
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 366 IHLSTLPQDVTEEEIASLVEEHGTIVNCKVFEMNQ---KKQALVQFETEEQATEALVCKH 422
++L L VT+E+++ L E GT+ +CK+ Q + V F T E+AT AL +
Sbjct: 308 LYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMN 367
Query: 423 ATSLSGSVIRISFSQ 437
++G + ++ +Q
Sbjct: 368 GKMVAGKPLYVAPAQ 382