Miyakogusa Predicted Gene
- chr4.LjT32J05.120.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.LjT32J05.120.nc + phase: 0
(293 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC146760_9.5 RNA-binding region RNP-1 (RNA recognition moti... 126 1e-29
IMGA|CR962128_15.4 RNA-binding region RNP-1 (RNA recognition mot... 119 1e-27
IMGA|AC147364_48.5 RNA-binding region RNP-1 (RNA recognition mot... 98 3e-21
IMGA|AC144459_24.5 RNA-binding region RNP-1 (RNA recognition mot... 66 2e-11
IMGA|AC137701_36.4 RNA-binding region RNP-1 (RNA recognition mot... 61 5e-10
IMGA|AC202518_12.3 RNA-binding region RNP-1 (RNA recognition mot... 55 5e-08
IMGA|AC139882_12.5 RNA-binding region RNP-1 (RNA recognition mot... 50 2e-06
IMGA|CU062643_11.3 RNA-binding region RNP-1 (RNA recognition mot... 48 6e-06
IMGA|CT963106_6.5 Rhodopsin-like GPCR superfamily; RNA-binding r... 47 7e-06
IMGA|AC135100_25.5 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis... 47 1e-05
IMGA|AC174143_20.4 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis... 47 1e-05
IMGA|AC146705_26.5 RNA-binding region RNP-1 (RNA recognition mot... 47 1e-05
IMGA|AC157373_30.4 RNA-binding region RNP-1 (RNA recognition mot... 46 1e-05
IMGA|CU457783_12.3 RNA-binding region RNP-1 (RNA recognition mot... 45 3e-05
IMGA|CU041253_29.4 RNA-binding region RNP-1 (RNA recognition mot... 45 3e-05
IMGA|CT033766_5.5 U2 auxiliary factor small subunit chr05_pseudo... 45 3e-05
IMGA|AC202362_16.3 RNA-binding region RNP-1 (RNA recognition mot... 45 3e-05
IMGA|CT030180_20.5 RNA-binding region RNP-1 (RNA recognition mot... 45 3e-05
IMGA|AC150443_40.5 RNA-binding region RNP-1 (RNA recognition mot... 45 4e-05
IMGA|AC119413_25.4 RNA-binding region RNP-1 (RNA recognition mot... 45 4e-05
IMGA|AC127168_20.5 RNA-binding region RNP-1 (RNA recognition mot... 45 4e-05
IMGA|AC137522_14.4 RNA-binding region RNP-1 (RNA recognition mot... 45 5e-05
IMGA|AC174277_12.4 RNA-binding region RNP-1 (RNA recognition mot... 44 8e-05
IMGA|AC144431_42.4 RNA-binding region RNP-1 (RNA recognition mot... 44 9e-05
IMGA|AC148486_23.5 Ribosomal protein S2; Polyadenylate binding p... 43 2e-04
IMGA|AC150977_25.5 RNA-binding region RNP-1 (RNA recognition mot... 42 2e-04
IMGA|AC149546_31.4 RNA-binding region RNP-1 (RNA recognition mot... 42 4e-04
IMGA|AC150443_41.5 RNA-binding region RNP-1 (RNA recognition mot... 41 7e-04
>IMGA|AC146760_9.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 22846699-22850069 E
EGN_Mt071002 20080227
Length = 248
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 74/91 (81%)
Query: 43 LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
LP+ LLVRNL D RPEDLR PF +GP+KD+YLPK+YYTG+PRGFGF+++ DAA+A
Sbjct: 39 LPTSLLVRNLRHDCRPEDLRRPFGHFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADA 98
Query: 103 KHHLNHTIIGGREIRIVFAEENRKTPQEMRV 133
K+H++ ++ GREI +VFAEENRK P EMRV
Sbjct: 99 KYHMDGQVLLGREITVVFAEENRKKPTEMRV 129
>IMGA|CR962128_15.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 28226391-28230385 H
EGN_Mt071002 20080227
Length = 289
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 70/86 (81%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
LLVRN+PLD RPE+LR PFER+GPV+DVY+PK+YY+G+PRGF FV++ +A+EA++H+
Sbjct: 49 LLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYEASEAQYHM 108
Query: 107 NHTIIGGREIRIVFAEENRKTPQEMR 132
+ I GREI +V A E RK P+EMR
Sbjct: 109 DRQIFAGREISVVVAAETRKRPEEMR 134
>IMGA|AC147364_48.5 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 28511816-28513959 E
EGN_Mt071002 20080227
Length = 101
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/50 (94%), Positives = 47/50 (94%)
Query: 84 EPRGFGFVKYRFGEDAAEAKHHLNHTIIGGREIRIVFAEENRKTPQEMRV 133
EPRGFGFVKYR GEDAAEAK LNHTIIGGREIRIVFAEENRKTPQEMRV
Sbjct: 9 EPRGFGFVKYRHGEDAAEAKQQLNHTIIGGREIRIVFAEENRKTPQEMRV 58
>IMGA|AC144459_24.5 RNA-binding region RNP-1 (RNA recognition
motif); HMG-I and HMG-Y, DNA-binding
chr05_pseudomolecule_IMGAG_V2 23848157-23844573 F
EGN_Mt071002 20080227
Length = 267
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 51/76 (67%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
LLV N+ +DL F++YG V D+++P++ TGE RGF FV+Y++ ++A++A L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 107 NHTIIGGREIRIVFAE 122
+ ++ GREI + FA+
Sbjct: 78 DGRMVDGREITVQFAK 93
>IMGA|AC137701_36.4 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 16974271-16978271 E
EGN_Mt071002 20080227
Length = 382
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L+VRNLP A+ ++R F G V +V++P+ TG +GF FVK+ +DA A L
Sbjct: 284 LIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRKL 343
Query: 107 NHTIIGGREIRIVFA 121
N + G R I + +A
Sbjct: 344 NGSKFGSRLIAVDWA 358
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 43 LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
P L V NLP L F GPV+ ++ + + RGFG+V++ +DA +A
Sbjct: 19 CPLTLFVSNLPYSFTNSQLEQTFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVEKDANQA 78
Query: 103 KHHLNHTIIGGREIRIVFA-----EENRKT 127
N +++G R+I + A ENR++
Sbjct: 79 IELKNSSLVGDRKIVVKHAIPRPPRENRRS 108
>IMGA|AC202518_12.3 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 16448553-16449568 E
EGN_Mt071002 20080227
Length = 112
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 44 PSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAK 103
+ L + L + LR FE++G + +V + N+ TGE +G+GFV++ AA A+
Sbjct: 32 STKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATAR 91
Query: 104 HHLNHTIIGGREIRIVFAEE 123
L+ I+ GR IR+ +A +
Sbjct: 92 KELHGQIVDGRRIRVGYAHK 111
>IMGA|AC139882_12.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 15467244-15472639 E
EGN_Mt071002 20080227
Length = 379
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 65 FERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHLNHTIIGGREIRIVFAEEN 124
F + GPV +VY+PK+ T + +G+GFV++R EDA A LN + G+ IR+ A ++
Sbjct: 45 FVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD 104
Query: 125 RKT 127
+K+
Sbjct: 105 KKS 107
>IMGA|CU062643_11.3 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 28273303-28271287 H
EGN_Mt071002 20080227
Length = 290
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
LL +N+P + ED+R FE+YG V V L Y RG FV+ E+A+EA + L
Sbjct: 91 LLAQNVPWSSTTEDVRSLFEKYGKVLHVELSM-YNKNRNRGLAFVEMGSPEEASEALNSL 149
Query: 107 NHTIIGGREIRIVFA 121
GR I I +A
Sbjct: 150 QSYEFDGRIINIQYA 164
>IMGA|CT963106_6.5 Rhodopsin-like GPCR superfamily; RNA-binding
region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 24353203-24350247 F
EGN_Mt071002 20080227
Length = 149
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%)
Query: 42 PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
PL S +LV+NLP L+ F +G + +V + K+ T +G F++Y +DA
Sbjct: 36 PLASKILVKNLPYFTGENALQKKFSNFGKIAEVQMVKDVSTERSKGLAFIQYTCQDDAML 95
Query: 102 AKHHLNHTIIGGREIRI 118
A ++ GR I +
Sbjct: 96 ALETMDQQSFYGRTISV 112
>IMGA|AC135100_25.5 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis
antigen chr08_pseudomolecule_IMGAG_V2 29868882-29857777
E EGN_Mt071002 20080227
Length = 735
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA--KH 104
L V ++P A ED+R FE +G V +V L K+ TG+ +G F+KY E+A +A
Sbjct: 90 LFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 149
Query: 105 HLNHTIIGG-REIRIVFAEENRK 126
H HT+ GG I++ +A+ R+
Sbjct: 150 HNRHTLPGGVGPIQVRYADGERE 172
>IMGA|AC174143_20.4 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis
antigen chr08_pseudomolecule_IMGAG_V2 29672130-29683222
E EGN_Mt071002 20080227
Length = 735
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA--KH 104
L V ++P A ED+R FE +G V +V L K+ TG+ +G F+KY E+A +A
Sbjct: 90 LFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 149
Query: 105 HLNHTIIGG-REIRIVFAEENRK 126
H HT+ GG I++ +A+ R+
Sbjct: 150 HNRHTLPGGVGPIQVRYADGERE 172
>IMGA|AC146705_26.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 23207650-23209533 F
EGN_Mt071002 20080227
Length = 146
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 44 PSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAK 103
S L + L + + LR F YG V + + + TG RGFGFV + E++A +
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFT-SEESATSA 93
Query: 104 HHLNHTIIGGREIRIVFAEE 123
++ + GR IR+ +A +
Sbjct: 94 LSMDGQDLNGRNIRVSYAND 113
>IMGA|AC157373_30.4 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 1636778-1642537 E
EGN_Mt071002 20080227
Length = 541
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%)
Query: 45 SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
S + V +PLDA+ EDL+ E G V V + K E RGF FV YR E A++A
Sbjct: 235 SEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIK 294
Query: 105 HLNHTIIGGREIRI 118
LN+T +I+
Sbjct: 295 ELNNTEFKAGKIKC 308
>IMGA|CU457783_12.3 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 29353518-29349911 E
EGN_Mt071002 20080227
Length = 420
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ V L A EDLR PF +YG + V +P +G GFV++ +A EA L
Sbjct: 294 IFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKL 347
Query: 107 NHTIIGGREIRIVFA 121
N T +G + +R+ +
Sbjct: 348 NGTTVGKQTVRLSWG 362
>IMGA|CU041253_29.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 34554315-34559382 E
EGN_Mt071002 20080227
Length = 407
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L V NL + LR FE +G V+ V LP + TG +GFGF+++ E A A+
Sbjct: 139 LYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLN 198
Query: 107 NHTIIGGREIRI 118
I GR I++
Sbjct: 199 GKLEIAGRTIKV 210
>IMGA|CT033766_5.5 U2 auxiliary factor small subunit
chr05_pseudomolecule_IMGAG_V2 23709374-23707315 E
EGN_Mt071002 20080227
Length = 161
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ V +P D D+ F +YG V D+ L ++ TG+ +GF F+ Y A +L
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 107 NHTIIGGREIRI 118
N + GR IR+
Sbjct: 98 NGAQVSGRIIRV 109
>IMGA|AC202362_16.3 RNA-binding region RNP-1 (RNA recognition
motif); Calcium-binding EF-hand
chr01_pseudomolecule_IMGAG_V2 218619-221289 E
EGN_Mt071002 20080227
Length = 311
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 34/76 (44%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L V NLP L F G V V + + T RGF FV EDA EA
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 107 NHTIIGGREIRIVFAE 122
+ T +GGR I++ F E
Sbjct: 170 DGTTVGGRAIKVNFPE 185
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%)
Query: 44 PSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAK 103
P + NL D + LR F + + + G+ RG+GFV + ED A
Sbjct: 206 PHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVAL 265
Query: 104 HHLNHTIIGGREIRIVFAEENRK 126
+N + GR +R+ A +NRK
Sbjct: 266 SAMNGVEVQGRPLRLKLAVDNRK 288
>IMGA|CT030180_20.5 RNA-binding region RNP-1 (RNA recognition
motif) chr03_pseudomolecule_IMGAG_V2 22195567-22197506
E EGN_Mt071002 20080227
Length = 352
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 44 PSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKY 93
P + + L D E+ FERYG + D + K+ +TG PRGFGF+ Y
Sbjct: 17 PGKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITY 66
>IMGA|AC150443_40.5 RNA-binding region RNP-1 (RNA recognition
motif); Calcium-binding EF-hand
chr07_pseudomolecule_IMGAG_V2 32027929-32025407 E
EGN_Mt071002 20080227
Length = 284
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 42 PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
P S + + LP D +D+R E G + ++ L K+ TGE +G+ FV Y+ E A +
Sbjct: 101 PHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQK 160
Query: 102 AKHHLNHTIIGGREIRIVFAE 122
A +++ G+ +R + +E
Sbjct: 161 AIDDIHNKEFKGKTLRCLLSE 181
>IMGA|AC119413_25.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 11723269-11717829 E
EGN_Mt071002 20080227
Length = 324
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L+V NLP D++ F + G V DV + K+ G+ +G+ FV GE A A
Sbjct: 98 LIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSK-DGKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 107 NHTIIGGREIRIVFAE 122
N T I GR +R+ FA+
Sbjct: 157 NATEISGRILRVEFAK 172
>IMGA|AC127168_20.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 28623498-28619047 F
EGN_Mt071002 20080227
Length = 454
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ V L D EDLR PF ++G V V +P +G GFV+ ++A EA L
Sbjct: 336 IFVGGLDSDISDEDLRQPFLQFGDVISVKIPVG------KGCGFVQLADRKNAEEAIQGL 389
Query: 107 NHTIIGGREIRIVFA 121
N T+IG + +R+ +
Sbjct: 390 NGTVIGKQTVRLSWG 404
>IMGA|AC137522_14.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 33036485-33042576 F
EGN_Mt071002 20080227
Length = 567
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L V NL + +LR FE +G ++ V LP + TG +GFGFV++ E A A+
Sbjct: 305 LYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLN 364
Query: 107 NHTIIGGREIRI 118
I GR I++
Sbjct: 365 GKLEIAGRTIKV 376
>IMGA|AC174277_12.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 39131449-39132842 F
EGN_Mt071002 20080227
Length = 292
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 31/59 (52%)
Query: 49 VRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHLN 107
V NL D R DL F +G V VY+ + TG RGFGFV + EDA A + LN
Sbjct: 215 VTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKLN 273
>IMGA|AC144431_42.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 6167334-6172171 E
EGN_Mt071002 20080227
Length = 399
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ V LP +A EDLR F R+G ++DVY+P++ RGFGFV F ++ + L
Sbjct: 229 IFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT--FADEGVADRVSL 286
Query: 107 NHTIIGGREIRI 118
I G E+ I
Sbjct: 287 RPHEICGHEVAI 298
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE---AK 103
L+V +P D E L+ +YG ++D + K TG RGFG+V + +DA E +
Sbjct: 6 LVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGE 65
Query: 104 HHLNHTIIGGREIRIVFAEENRKTP 128
H L ++ E+++ +E + P
Sbjct: 66 HVLGDRML---EVKVATPKEEMRAP 87
>IMGA|AC148486_23.5 Ribosomal protein S2; Polyadenylate binding
protein, human types 1, 2, 3, 4
chr01_pseudomolecule_IMGAG_V2 6658115-6663331 F
EGN_Mt071002 20080227
Length = 647
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ V+NL +DL+ F YG + L ++ G + FGFV + EDAA+A L
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDA-DGRSKCFGFVNFENAEDAAKAVEAL 271
Query: 107 NHTIIGGREIRIVFAEENRKTPQEMR 132
N + +E + A++ + QE++
Sbjct: 272 NGKKVDDKEWYVGKAQKKSEREQELK 297
>IMGA|AC150977_25.5 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 14333004-14330524 F
EGN_Mt071002 20080227
Length = 280
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L V NLP L FE G V+ V + + TG RGFGFV + A L
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 107 NHTIIGGREIRI 118
N ++ GRE+R+
Sbjct: 146 NGYVVDGRELRV 157
>IMGA|AC149546_31.4 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 17368014-17360795 E
EGN_Mt071002 20080227
Length = 971
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ V L D EDL+ F+R G V +V L KN T + RG+ V++ E A +A +
Sbjct: 392 IFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEM 451
Query: 107 NHTIIGGREIRIVFAEEN 124
+ +I G+ +E+N
Sbjct: 452 KNPVIRGKRCGTSPSEDN 469
>IMGA|AC150443_41.5 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 32023635-32021981 E
EGN_Mt071002 20080227
Length = 205
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 42 PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
PL L V+N+P + E L+ F R+G V V +P +G+ R FGF+ Y A +
Sbjct: 3 PLVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERSSALK 61
Query: 102 AKHHLNHTIIGGREIRIVFAE 122
A I G+ + +V A+
Sbjct: 62 AVKETEKYEIDGQALEVVIAK 82