Miyakogusa Predicted Gene

chr4.CM0680.50.nc

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr4.CM0680.50.nc - phase: 0 
         (1343 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC202356_4.3 Leucine-rich repeat chr04_pseudomolecule_IMGAG...   661   0.0  
IMGA|AC202356_1.3 Leucine-rich repeat; Leucine-rich repeat, ribo...   296   3e-80

>IMGA|AC202356_4.3 Leucine-rich repeat chr04_pseudomolecule_IMGAG_V2
           33271932-33264270 H EGN_Mt071002 20080227
          Length = 629

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/579 (60%), Positives = 405/579 (69%), Gaps = 36/579 (6%)

Query: 413 GQALVKINIGNILDSTQNWRGALDAYQDSYRIAVEAKLPDVQINALENMHYSNMIRFDNE 472
           GQALVKINIGN+LDST NW+ A DAY++SYRIAVEA LP VQ++ALENMHYSNMIRFD+E
Sbjct: 2   GQALVKINIGNVLDSTHNWKEACDAYKESYRIAVEADLPVVQLSALENMHYSNMIRFDDE 61

Query: 473 DETWRXXXXXXXXXXXXXXXXAKTMPEDRCSETDTEADH-LSDGGSDDFCIPKTISRSKS 531
           DET R                A  +P+D CSETDTEAD  +S+ G DDFC+PKT  RSK+
Sbjct: 62  DETRRLKLLIDELKKSNEEIEANNVPDDCCSETDTEADDCMSNSGPDDFCLPKTTYRSKT 121

Query: 532 RTTGEEFTDDV-PLMSIYQSIKGSSKKNTDHMDSLTNSSKQAQLSPKSMTNLTSSHQTAN 590
            T  +E  DD  PLMS YQSIKGSS+K T H +S TNS+KQ   SP+S+T L S HQ  +
Sbjct: 122 LTPEDELDDDTTPLMSTYQSIKGSSRKITGHKESHTNSTKQVDQSPRSLTKLKSVHQAVS 181

Query: 591 NRKRVLVI-----SDDEEEYLSRKDHKCLIEDFPTSDASMFSLLCSNPKIPLYQSHVLNG 645
            RKRV VI      DDE E  SRKD    +ED P  D                       
Sbjct: 182 GRKRVRVILSDDDEDDEVECSSRKDRDYPLEDLPNYDT---------------------- 219

Query: 646 TCLIAVINKASPRKVQVVSEYRSKYPINVEEXXXXXXXXXPITAAKSSRHSGSLSNDIIA 705
                + +K SP K+QV+ EY SK  INVEE         P T  K+SRHS SLSNDI+A
Sbjct: 220 -----IKSKISPSKIQVLPEYGSKCAINVEESSSSFKGSSPNTGTKTSRHSRSLSNDIVA 274

Query: 706 EADFPSGSKCDIDSSGKYKGVAHPLVQYPQNDLQQHITCRIGNDLIHVEAALCTADDQLN 765
           E  FPSGSKCD D SGK  GVAHP++ +  +D  ++I CRIGND+++VE ALC A DQ +
Sbjct: 275 EPYFPSGSKCDTDVSGKQNGVAHPMMHHSLHD--RYIACRIGNDIVYVEEALCAAGDQFD 332

Query: 766 IDLLKAVVPCLYYLQLPAEKRSEGLLPIIQHIKCAGRDLESLEPIEKLKEHLGNDTFEAS 825
           ID LKAVV C +YLQ PAEK+SEGLLPIIQHIKCAGRDLESLE +E + EHL N+  EA 
Sbjct: 333 IDSLKAVVACKFYLQFPAEKKSEGLLPIIQHIKCAGRDLESLETVENIMEHLQNNMVEAF 392

Query: 826 IEGCVQKRLIKIYVDCCTELSKVPNIKVLKKLYNLEVSDDEIVVSDCDLQDLSITPLINA 885
           I+G +QKRLIK+YVDCC  LS  P IKVLKKLYNL+VSDDEI+ SDCDLQDLSITPLI+A
Sbjct: 393 IDGWIQKRLIKMYVDCCKGLSVEPKIKVLKKLYNLQVSDDEIIASDCDLQDLSITPLIDA 452

Query: 886 LQSQKEFAMLDISHNLLGNGVMEKLKKVFSALNQSYGGLTLDLHCNRFGPTALFQISECS 945
           L SQ  F+MLDISHN LGNG MEKL+KVF+   QSYG LTLDLHCNRFGPT LFQI ECS
Sbjct: 453 LHSQMAFSMLDISHNCLGNGTMEKLRKVFTTSGQSYGDLTLDLHCNRFGPTTLFQICECS 512

Query: 946 ALFTRLGVLNISGNRLTDACRSYLLTILKSCTALYSLNV 984
            LF RL VLNISGNRLTDAC SYL T+LK       LN+
Sbjct: 513 VLFARLEVLNISGNRLTDACGSYLSTMLKKLYRFSELNM 551



 Score = 82.8 bits (203), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 47/81 (58%)

Query: 1033 LKRFSELNMRGLKLGKPVVHSLCQXXXXXXXXXXXXXXXXXXXXXXXXXAESLVKGTEEL 1092
            L RFSELNM GLKLG+PVV SLCQ                          E L+KGTEE 
Sbjct: 543  LYRFSELNMSGLKLGRPVVDSLCQLAGTLTLSGLILGGTGIGNEGAMKVTEPLLKGTEEF 602

Query: 1093 VKLDQSYCGLTSKYILNTNVN 1113
            VKLD SYCGLTS YIL+ NVN
Sbjct: 603  VKLDISYCGLTSDYILSINVN 623


>IMGA|AC202356_1.3 Leucine-rich repeat; Leucine-rich repeat,
            ribonuclease inhibitor subtype
            chr04_pseudomolecule_IMGAG_V2 33248788-33247445 E
            EGN_Mt071002 20080227
          Length = 245

 Score =  296 bits (759), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 151/211 (71%), Positives = 171/211 (81%), Gaps = 3/211 (1%)

Query: 1132 GSNTLFSLLTNTQCSLKVLVLRKCKLGCDGVLHIIEALADNSCLEELDLADNSVPNELSA 1191
            G NTLFSLL N+QC LKVLVL+KC+LG  GV+HIIEALADNS LEEL+LADNSV  ELSA
Sbjct: 37   GCNTLFSLLINSQCCLKVLVLKKCQLGLAGVVHIIEALADNSGLEELNLADNSVSTELSA 96

Query: 1192 LQNDLSVRRCSQNQDQKLDNMKVDDHQEVICSLNTVCNQLEVADSEDEESPFRVEGTASG 1251
            LQ   S + CSQNQ+QKLD MKVDD+QEV CS NT+ +QLEVADSED +   R E  ASG
Sbjct: 97   LQCAASSKSCSQNQEQKLDTMKVDDNQEVFCSPNTLDDQLEVADSEDNQ--VRAEAAASG 154

Query: 1252 IDDSCASSGQRNSSSPECHFTKQLSIAIGKARSLELLDLSNNGFSAQVAEAFYGSWKTLR 1311
            IDDSCASS QRN SSP+CHFT+Q+S AI KA++L+ LDLSNN FSAQ AE  YGSW TLR
Sbjct: 155  IDDSCASSCQRN-SSPDCHFTQQISSAIAKAKNLQSLDLSNNNFSAQAAETLYGSWTTLR 213

Query: 1312 PLSSQKHITGKIIHLSTNERRCCGVKPCCKK 1342
            PLSS +HIT  IIH ST E++CC VKPCCKK
Sbjct: 214  PLSSHRHITKHIIHFSTKEKKCCSVKPCCKK 244