Miyakogusa Predicted Gene

chr4.CM0337.240.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr4.CM0337.240.nc + phase: 0 
         (620 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC152498_14.4 Sec1-like protein chr08_pseudomolecule_IMGAG_...    94   1e-19
IMGA|AC152158_45.5 Sec1-like protein chr04_pseudomolecule_IMGAG_...    89   4e-18
IMGA|CT963108_66.5 Sec1-like protein chr05_pseudomolecule_IMGAG_...    84   2e-16
IMGA|AC140024_23.5 Sec1-like protein chr08_pseudomolecule_IMGAG_...    76   5e-14

>IMGA|AC152498_14.4 Sec1-like protein chr08_pseudomolecule_IMGAG_V2
           22443492-22428737 F EGN_Mt071002 20080227
          Length = 666

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 180/410 (43%), Gaps = 37/410 (9%)

Query: 8   KQTECIARMLNLNQPLNSSGTANEEA-YKILIYDKFCQNILSPLIHVKDLRKHGVTLYFL 66
           K  + I+R   L++ L S+ T + ++ +K+LI DK    I+S    + D+   GV+L   
Sbjct: 18  KNLKQISRERLLHEMLRSAKTGDSKSTWKVLIMDKLTVKIMSHSCKMADITDEGVSLVED 77

Query: 67  IDKDRNPVHDVPAVYFVQPTHHNLQRIIADAS--RSLYHTFHLNFSTSIPRPLLEDLASG 124
           I K R P+  + A+YF+QPT  N+   ++D S  + LY    + FS+ I R L+ ++   
Sbjct: 78  IYKRRQPLPTMDAIYFIQPTRENVIMFLSDMSGRKPLYRKAFVFFSSPIARELVMEIKKD 137

Query: 125 TLASDSIQRISRVHDQYLEFVTLEDDLFSLAHKPCFLQLNDPSAGDREIEEIVEKIVSGL 184
           TL    + RI  + +  LE+  ++   F   ++    +L      +R+    +  + + +
Sbjct: 138 TLV---LPRIGALREMNLEYFAIDSQGFITNNERALEELFGDEENNRKAVACLNVMATRI 194

Query: 185 FCVLATLAVVPVI--RCPRGGPA-------EMVATALDQRIRDHLLSKNNLFTEGGNFVS 235
             V A+L   P +  R  R   A       +++ T L   + D L+            V 
Sbjct: 195 ASVFASLREFPFVRFRAARSLDANTMTTFHDLIPTKLAAGVWDCLMKYK-------KSVP 247

Query: 236 SFQRPVLC---IFDRNFELPVAIQHDFRYRPLVHDVLGLKLNRL--SVQGEKGG---MRS 287
           +F +   C   I DR  +    + H++ Y  +  D+L ++ N+    + G  GG    + 
Sbjct: 248 NFPQTETCELLIIDRTIDQIAPVIHEWTYDAMCRDLLNMEGNKYVHEIPGRNGGPPERKE 307

Query: 288 YELDSSDSFWLSNGSLEFPEVAVEIETQLNKYKKDVDEVNKRTGGTHGAEFEGTDLIGNT 347
             L+  D  WL    L    +A +   +L++   +    NK     HG+   G     +T
Sbjct: 308 VLLEDHDPIWL---ELRHAHIA-DASERLHEKMTNFISKNKAAQIQHGSRGSGE---MST 360

Query: 348 KHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMM 397
           + L   V +LP+ +E+   +  H  IA  +   I+E  L    + E D++
Sbjct: 361 RDLQKMVQALPQYSEQIDKLSLHVEIAGKVNSIIRETGLRELGQLEQDLV 410


>IMGA|AC152158_45.5 Sec1-like protein chr04_pseudomolecule_IMGAG_V2
           5959145-5950188 H EGN_Mt071002 20080227
          Length = 658

 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 100/437 (22%), Positives = 190/437 (43%), Gaps = 47/437 (10%)

Query: 13  IARMLNLNQPLNSSGTANEEAYKILIYDKFCQNILSPLIHVKDLRKHGVTLYFLIDKDRN 72
           I+R   L + L S+ + + +A+K+LI DK    ++S    + D+    V+L   + + R 
Sbjct: 23  ISRDRLLYEMLRSAKSGDSKAWKVLIMDKVTVKVMSHSCKMADITDQEVSLVEDLFRRRQ 82

Query: 73  PVHDVPAVYFVQPTHHNLQRIIADAS--RSLYHTFHLNFSTSIPRPLLEDLASGTLASDS 130
           P+  + AVY++QP+  N+   ++D S    LY       ++ IP+ L+  +   T     
Sbjct: 83  PLPSLDAVYYIQPSKENVVMFLSDMSGREPLYK------NSPIPKELINHIKCDTSV--- 133

Query: 131 IQRISRVHDQYLEFVTLEDDLFSLAHKPCFLQLNDPSAGDREIEEIVEKIVSGLFCVLAT 190
           + RI  + +  LE+  ++   F    +    +L   +   R     +  +   +  V A+
Sbjct: 134 LPRIGALREMNLEYFPIDSQGFITDQETALQELYGNANNIRRFNTCLNNMAIRMATVFAS 193

Query: 191 LAVVPVIRC----------PRGGPAEMVATALDQRIRDHLLSKNNLFTEGGNFVSSFQRP 240
           L  +P +            P  G  E+V T L   + D       + ++  + + +F + 
Sbjct: 194 LKELPNVWYRSAKESDESEPTAG-RELVPTKLADAVWD-------MVSKYKSTIPNFPQS 245

Query: 241 VLC---IFDRNFELPVAIQHDFRYRPLVHDVLGLKLNRL--SVQGEKGG---MRSYELDS 292
             C   I DR+ +    + H++ Y  ++HD+L +  N+    V  + GG    +   L+ 
Sbjct: 246 ETCDLIIVDRSIDQVAPVIHEWTYDAMIHDLLDMDGNKYIHEVASKTGGSPEKKEVLLEE 305

Query: 293 SDSFWLSNGSLEFPEVAVEIETQLNKYKKDVDEVNKRTGGTHGAEFEGTDLIGNTKHLMN 352
            D+ WL    L    +A   E   +K+   V +   +    H +  +G++L  +T+ L  
Sbjct: 306 HDAVWL---ELRHSHIADASERLHDKFTNFVQK--NKAAQIHQSGRDGSEL--STRDLQK 358

Query: 353 AVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMVRGGIERNELLGVLR 412
            V +LP+ TE+ + I  H  IA  +   I+E  L    + E D +V G     +++  LR
Sbjct: 359 MVQALPQYTEQVEKISLHVEIAGKINTIIRENDLRELGQLEQD-LVFGDAAAKDVINFLR 417

Query: 413 GKGTKID--KLRFAIMY 427
            K       KLR  ++Y
Sbjct: 418 TKQKMSPEYKLRLLMIY 434


>IMGA|CT963108_66.5 Sec1-like protein chr05_pseudomolecule_IMGAG_V2
           3237861-3229798 E EGN_Mt071002 20080227
          Length = 669

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/432 (22%), Positives = 188/432 (43%), Gaps = 34/432 (7%)

Query: 13  IARMLNLNQPLNSSGTANEEA-YKILIYDKFCQNILSPLIHVKDLRKHGVTLYFLIDKDR 71
           I R   L++ L S+ T + ++ +K+LI DK    I+S    + D+   GV+L   I K R
Sbjct: 23  ITRDRLLHEMLRSTKTGDSKSTWKVLIMDKLTIKIMSNSCKMADITDEGVSLVEDIYKRR 82

Query: 72  NPVHDVPAVYFVQPTHHNLQRIIAD-ASRS-LYHTFHLNFSTSIPRPLLEDLASGTLASD 129
            P+  + A+YF+QPT  N+   ++D A R+ LY    +  S+ I R L+ D+        
Sbjct: 83  QPLPTMDAIYFIQPTKENIIMFLSDMAGRAPLYRKAFVFLSSPISRELVLDIKKDPRV-- 140

Query: 130 SIQRISRVHDQYLEFVTLEDDLFSLAHKPCFLQLNDPSAGDREIEEIVEKIVSGLFCVLA 189
            + R+  + +  LE+  ++   F   ++     L      +R+    +  + + +  V A
Sbjct: 141 -LSRLGALREMNLEYFAIDCQGFITNNERALEDLFGNEENNRKGVACLNAMATRIATVFA 199

Query: 190 TLAVVPVIRCPRGGPAEMVATALDQRIRDHLLSK-----NNLFTEGGNFVSSFQRPVLC- 243
           +L   P IR        + AT +    RD + +K      +  T+    + +F +   C 
Sbjct: 200 SLREFPSIRF--RAAKSLDATTMTT-FRDLVPTKLAAGVWDCLTKYKKTIPNFPQTETCE 256

Query: 244 --IFDRNFELPVAIQHDFRYRPLVHDVLGLKLNRL--SVQGEKGGM---RSYELDSSDSF 296
             I DR+ +    + H++ Y  + HD+L ++ N+    V  + GG+   +   L+  D  
Sbjct: 257 LLIIDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHEVPAKAGGLPERKEVLLEDHDPV 316

Query: 297 WLSNGSLEFPEVAVEIETQLNKYKKDVDEVNKRTGGTHGAEFEGTDLIGNTKHLMNAVNS 356
           WL        + +  +  ++  +      ++K      G+         +T+ L   V +
Sbjct: 317 WLELRHAHIADASERLHAKMTSF------ISKNKAAQLGSRSSSE---MSTRDLQKMVQA 367

Query: 357 LPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMVRGGIERNELLGVLRGK-- 414
           LP+ +E+   +  H  +A  +   I+E  L    + E D +V G     +++  L  K  
Sbjct: 368 LPQYSEQIDKLSLHVELAGKINSIIRESGLRELGQVEQD-LVFGDATMKDVIKFLTMKED 426

Query: 415 GTKIDKLRFAIM 426
            T+ +KLR  ++
Sbjct: 427 TTRENKLRLLMI 438


>IMGA|AC140024_23.5 Sec1-like protein
          chr08_pseudomolecule_IMGAG_V2 12030251-12030006 H
          EGN_Mt071002 20080227
          Length = 81

 Score = 75.9 bits (185), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/39 (89%), Positives = 35/39 (89%)

Query: 45 NILSPLIHVKDLRKHGVTLYFLIDKDRNPVHDVPAVYFV 83
          NILS LIHVKD  KHGVTLYFLIDKDR PVHDVPAVYFV
Sbjct: 35 NILSLLIHVKDFCKHGVTLYFLIDKDRKPVHDVPAVYFV 73