Miyakogusa Predicted Gene

chr4.CM0256.180.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr4.CM0256.180.nd - phase: 0 
         (699 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC157983_7.4 Zinc finger, CCCH-type chr08_pseudomolecule_IM...   150   2e-36

>IMGA|AC157983_7.4 Zinc finger, CCCH-type
           chr08_pseudomolecule_IMGAG_V2 25866565-25869502 H
           EGN_Mt071002 20080227
          Length = 594

 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 77/120 (64%), Gaps = 16/120 (13%)

Query: 26  KRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCYYWLNGNCLNPKCSFRHPPLDGL 85
           KRNTDCVYFLASPLTCKKG ECEYRH E AR+NPRDC+YWL+GNCLNP C+FRHPP+DG 
Sbjct: 7   KRNTDCVYFLASPLTCKKGVECEYRHHEIARLNPRDCWYWLSGNCLNPTCAFRHPPVDGH 66

Query: 86  IXXXXXXXXXXXXXXXXXQIATAAATHAPYNSAKQAVPCIFFQKGLCLKGDRCAFLHGPN 145
                               +    +  P  + K  V C FF  G C KG +C+FLHGP+
Sbjct: 67  TGVP----------------SEPTQSSLPATANKTMVTCYFFFNGFCNKGSKCSFLHGPD 110