Miyakogusa Predicted Gene

chr4.CM0234.40.nc

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr4.CM0234.40.nc + phase: 0 
         (307 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC166899_24.4 Methyl-CpG binding chr08_pseudomolecule_IMGAG...   214   4e-56
IMGA|AC158172_5.4 Methyl-CpG binding chr06_pseudomolecule_IMGAG_...   118   4e-27
IMGA|AC202511_3.3 Methyl-CpG binding chr06_pseudomolecule_IMGAG_...   118   4e-27
IMGA|AC202511_25.3 Methyl-CpG binding chr06_pseudomolecule_IMGAG...   117   4e-27
IMGA|AC149641_27.4 Methyl-CpG binding chr04_pseudomolecule_IMGAG...   112   2e-25
IMGA|AC202511_21.3 Methyl-CpG binding  chr06_pseudomolecule_IMGA...    86   3e-17

>IMGA|AC166899_24.4 Methyl-CpG binding chr08_pseudomolecule_IMGAG_V2
           26292565-26297486 E EGN_Mt071002 20080227
          Length = 355

 Score =  214 bits (544), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 144/221 (65%), Gaps = 24/221 (10%)

Query: 25  SLELPAPSGWQKKFFPKKSGTPKKNEIVFTAPTGEEITSKKQLEQYLKAHPGGPAASEFD 84
           S ELPAPSGW KKFFPKKSGTPKKNEIVFT+PTGEEI +K+QLE+YLK + GGP  SEFD
Sbjct: 25  SFELPAPSGWTKKFFPKKSGTPKKNEIVFTSPTGEEIRTKRQLEKYLKTN-GGPNISEFD 83

Query: 85  WGTGETPRRSARISEKVKVTP--TPESDPPXXXXXXXXXXXXXXXXXXXXXXXXXXXMQE 142
           WGTGETPRRS+RI EKVK  P   P++DPP                           MQE
Sbjct: 84  WGTGETPRRSSRIVEKVKAAPPAEPKTDPP-KKRSRKSSASKKEASEDEAEETKDVEMQE 142

Query: 143 AGETKDAVKENQDENKAEDTDVNQDEKKAEATDANQDEKRAEDADVKEPTHPGENTDGPN 202
           AGETKD            D DV  ++K     + N+D+K AEDADVKE   PGE T    
Sbjct: 143 AGETKD------------DKDVELEKK---VVNENEDKKGAEDADVKESIQPGETT---- 183

Query: 203 DEGKLNTADEELQASKEKVDDKGAEGSDAVQNKD-DGSGEP 242
           DEGK NTAD +LQASKE +DDKGAEGS  VQNKD + +G+P
Sbjct: 184 DEGKSNTADGDLQASKENIDDKGAEGSGVVQNKDEEKTGQP 224


>IMGA|AC158172_5.4 Methyl-CpG binding chr06_pseudomolecule_IMGAG_V2
           11629064-11623646 H EGN_Mt071002 20080227
          Length = 189

 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 69/89 (77%), Gaps = 3/89 (3%)

Query: 26  LELPAPSGWQKKFFPKKSGTPKKNEIVFTAPTGEEITSKKQLEQYLKAHPGGPAASEFDW 85
           L+LPAPSGW KK+F  KSGTP K E+VFTAP+GE+I +++ +E+YLK + GGP  SEFDW
Sbjct: 42  LDLPAPSGWTKKYFFPKSGTPTKYEVVFTAPSGEKIHTRRHMEEYLKKN-GGPKVSEFDW 100

Query: 86  GTGETPRRSARISEKVKVTPTP--ESDPP 112
           G GETPRRSARI EK K  P    ES+PP
Sbjct: 101 GNGETPRRSARIIEKAKAAPLVEHESEPP 129


>IMGA|AC202511_3.3 Methyl-CpG binding chr06_pseudomolecule_IMGAG_V2
           11652984-11655851 H EGN_Mt071002 20080227
          Length = 172

 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 69/89 (77%), Gaps = 3/89 (3%)

Query: 26  LELPAPSGWQKKFFPKKSGTPKKNEIVFTAPTGEEITSKKQLEQYLKAHPGGPAASEFDW 85
           L+LPAPSGW KK+F  KSGTP K E+VFTAP+GE+I +++ +E+YLK + GGP  SEFDW
Sbjct: 25  LDLPAPSGWTKKYFFPKSGTPTKYEVVFTAPSGEKIHTRRHMEEYLKKN-GGPKVSEFDW 83

Query: 86  GTGETPRRSARISEKVKVTPTP--ESDPP 112
           G GETPRRSARI EK K  P    ES+PP
Sbjct: 84  GNGETPRRSARIIEKAKAAPLVEHESEPP 112


>IMGA|AC202511_25.3 Methyl-CpG binding chr06_pseudomolecule_IMGAG_V2
           11755505-11749155 E EGN_Mt071002 20080227
          Length = 157

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 69/89 (77%), Gaps = 3/89 (3%)

Query: 26  LELPAPSGWQKKFFPKKSGTPKKNEIVFTAPTGEEITSKKQLEQYLKAHPGGPAASEFDW 85
           L+LPAPSGW KK+F  KSGTP K E+VFTAP+GE+I +++ +E+YLK + GGP  SEFDW
Sbjct: 42  LDLPAPSGWTKKYFFPKSGTPTKYEVVFTAPSGEKIHTRRHMEEYLKKN-GGPKVSEFDW 100

Query: 86  GTGETPRRSARISEKVKVTPTP--ESDPP 112
           G GETPRRSARI EK K  P    ES+PP
Sbjct: 101 GNGETPRRSARIIEKAKAAPLVEHESEPP 129


>IMGA|AC149641_27.4 Methyl-CpG binding chr04_pseudomolecule_IMGAG_V2
           1522907-1523992 H EGN_Mt071002 20080227
          Length = 361

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 60/77 (77%), Gaps = 1/77 (1%)

Query: 37  KFFPKKSGTPKKNEIVFTAPTGEEITSKKQLEQYLKAHPGGPAASEFDWGTGETPRRSAR 96
           +FFPKK GTP+K EIVF APTGEEI+SK QL++YLK H G P  SEF WGTGETPRRS R
Sbjct: 2   QFFPKKKGTPRKPEIVFVAPTGEEISSKAQLKKYLKNHSGDPDISEFHWGTGETPRRSTR 61

Query: 97  ISEKVKVTPTP-ESDPP 112
           I E  K TP P +++PP
Sbjct: 62  IRETAKTTPPPAQAEPP 78


>IMGA|AC202511_21.3 Methyl-CpG binding
           chr06_pseudomolecule_IMGAG_V2 11741788-11741375 H
           EGN_Mt071002 20080227
          Length = 137

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 51/67 (76%), Gaps = 3/67 (4%)

Query: 48  KNEIVFTAPTGEEITSKKQLEQYLKAHPGGPAASEFDWGTGETPRRSARISEKVKVTPTP 107
           K E+VFTAP+GE+I +++ +E+YLK + GGP  SEFDWG GETPRRSARI EK K  P  
Sbjct: 12  KYEVVFTAPSGEKIHTRRHMEEYLKKN-GGPKVSEFDWGNGETPRRSARIIEKAKAAPLV 70

Query: 108 --ESDPP 112
             ES+PP
Sbjct: 71  EHESEPP 77