Miyakogusa Predicted Gene
- chr4.CM0229.490.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.CM0229.490.nc + phase: 0
(463 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC146567_42.4 RNA-binding region RNP-1 (RNA recognition mot... 518 e-147
IMGA|AC171804_27.4 RNA-binding region RNP-1 (RNA recognition mot... 234 7e-62
IMGA|AC148607_30.4 RNA-binding region RNP-1 (RNA recognition mot... 142 2e-34
IMGA|AC147517_1.5 RNA-binding region RNP-1 (RNA recognition moti... 140 8e-34
IMGA|AC163324_51.4 Nuclear transport factor 2 chr01_pseudomolecu... 75 6e-14
IMGA|AC136449_16.5 RNA-binding region RNP-1 (RNA recognition mot... 48 7e-06
IMGA|AC147538_3.4 Nuclear transport factor 2 chr03_pseudomolecul... 48 7e-06
IMGA|AC137701_36.4 RNA-binding region RNP-1 (RNA recognition mot... 43 3e-04
>IMGA|AC146567_42.4 RNA-binding region RNP-1 (RNA recognition
motif); Nuclear transport factor 2
chr04_pseudomolecule_IMGAG_V2 24158052-24162683 E
EGN_Mt071002 20080227
Length = 457
Score = 518 bits (1333), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/477 (61%), Positives = 325/477 (68%), Gaps = 45/477 (9%)
Query: 12 MVGNAFVEQYYSILHHDPEQVHRFYHETSILSRPEEDGXXXXXXXXXEINKKILSQDYKS 71
MVGNAFVEQYYSILH DP+QVHRFYH++S++SRPEEDG EI+KKI S +Y S
Sbjct: 1 MVGNAFVEQYYSILHRDPDQVHRFYHDSSVMSRPEEDGTMTTVTTTAEIDKKIQSLEYTS 60
Query: 72 FRVEILSADSQPSYKEGVIVAVTGCLTGTDNMKRKFAQSFFLAPQDKGYFVLNDVFRYVD 131
FRVE+LSAD+QPSY GV+V VTGCLTGTDN+KRKFAQSFFLAPQDKG++VLNDVFRYVD
Sbjct: 61 FRVEVLSADAQPSYNNGVMVVVTGCLTGTDNIKRKFAQSFFLAPQDKGFYVLNDVFRYVD 120
Query: 132 EYKSVDIESVPSRDADEITLSDA-FAPEPEPNHVPE--------------DIPPSQTAIA 176
YKS+DIESVP+ DADE S+A PEPEP HVPE IPP+QT IA
Sbjct: 121 AYKSIDIESVPANDADESAPSEAIITPEPEPVHVPEVIPPTQTVIPTAQTVIPPTQTVIA 180
Query: 177 ETDASIRKEVSQPLENGKLSVTEKVIPXXXXXXXXXXXXX----XXXXKADSNTQEDAPK 232
+T+ I KEVS PLENGKLSVTE VIP K SNTQED PK
Sbjct: 181 DTETIISKEVSLPLENGKLSVTENVIPVNHVKESSHHVKEPEQPTSIEKVASNTQEDTPK 240
Query: 233 KSFASIVNALNENAAPFHVRTSPMKP-VEQPRVSSKPASEAQAPIADVLLEKNNENAGKA 291
KSFASIVNAL +N+APFH+R SP KP V PRV S PA EA P D+ LEKNNENAG+A
Sbjct: 241 KSFASIVNALKDNSAPFHLRASPAKPAVHPPRVHSVPAPEAPTPNMDIPLEKNNENAGRA 300
Query: 292 HAIFVANLPMNATVEQLERAFVEFGPIKTNGIQVRSNKQQGSCFGFVEFESAASMQSALE 351
HAIFVANLPM+ATVEQL+RAF +FGPIK +GIQVRSNK GSCFGFVEFESAASMQSALE
Sbjct: 301 HAIFVANLPMSATVEQLDRAFKKFGPIKRDGIQVRSNK--GSCFGFVEFESAASMQSALE 358
Query: 352 AA--VILDNRRLSIEERRANNDRARYPSGRGGYRNDRNDSXXXXXXXXXXXXXXXXXXXX 409
A+ V+LDNRRLSIEERR R GYRNDRND+
Sbjct: 359 ASPPVMLDNRRLSIEERRGK--------WRSGYRNDRNDN-----FRGRGNFGGGRGGGF 405
Query: 410 XXXXDFERR-NEFSXXXXXXXXXXXXXXETAPRSYQNGQTGQNGGRV-ARQ-PVKAQ 463
DFERR EFS + PRSYQNG GG+V ARQ PVK Q
Sbjct: 406 NGRNDFERRGGEFSGRSRGGQNAGRSNGDAVPRSYQNG-----GGKVAARQPPVKVQ 457
>IMGA|AC171804_27.4 RNA-binding region RNP-1 (RNA recognition
motif); Nuclear transport factor 2
chr07_pseudomolecule_IMGAG_V2 10973149-10968378 E
EGN_Mt071002 20080227
Length = 512
Score = 234 bits (596), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 160/395 (40%), Positives = 217/395 (54%), Gaps = 34/395 (8%)
Query: 8 PTPQMVGNAFVEQYYSILHHDPEQVHRFYHETSILSRPEEDGXXXXXXXXXEINKKILSQ 67
P P +VG+AFVEQYY +LH PE VHRFY + S L RPE +G EI+KKILS
Sbjct: 10 PAPDVVGHAFVEQYYYMLHESPEHVHRFYQDVSKLGRPEPNGIIGITTTMAEIDKKILSM 69
Query: 68 DYKSFRVEILSADSQPSYKEGVIVAVTGCLTGTDNMKRKFAQSFFLAPQDKGYFVLNDVF 127
Y EILS D+Q S+ GVIV VTG + G DN+K+KF Q FFLAPQ+KGYFVLND+F
Sbjct: 70 GYSELSAEILSVDAQESFGGGVIVLVTGFMIGKDNVKQKFTQCFFLAPQEKGYFVLNDIF 129
Query: 128 RYVDEYKSVDIESVPSRDADEITLSDAFAPEPEPNHVPEDIPPSQTAIAETDASIRKEVS 187
RYVDE + + + A + D E + VPE I + AE EV
Sbjct: 130 RYVDENEIKEPDHAIRSPASPENVLDPLVLETQ---VPEQI----SVAAENGDRGELEVY 182
Query: 188 QPLENGKLSVTEKV---------IPXXXXXXXXXXXXXXXXXK-ADSNTQ-EDAPKKSFA 236
P ENG++SV E+ IP K A+ +Q E+ PKKS+A
Sbjct: 183 NP-ENGQVSVEEEEAPVPEVLVEIPNDSQKAAGFDHVPDDSQKVAELASQIEEVPKKSYA 241
Query: 237 SIVNALNENAAPFHVRT-----SPMKPVEQ-----PRVSSKPASEAQAPIADVLLEKNNE 286
SI+ + AAP V T + +K EQ P SS P + + I+ N E
Sbjct: 242 SILKVMKGAAAPSSVMTAASVRTSIKIQEQQSAAAPSPSSVPETNGSS-ISTNEGGNNQE 300
Query: 287 NAGKAHAIFVANLPMNATVEQLERAFVEFGPIKTNGIQVRSNKQQGSCFGFVEFESAASM 346
+ ++I++ LP NAT +E F +FGPIK+ G+QVR+ K G FGFVEFE ++
Sbjct: 301 TEAEGYSIYLKGLPGNATHALVENMFKKFGPIKSGGVQVRTAK--GFHFGFVEFEEESAA 358
Query: 347 QSALEAA-VILDNRRLSIEERRANNDRARYPSGRG 380
SA+EA+ +++++R++ IEE+R+ N R + P G
Sbjct: 359 LSAIEASPILINDRQVVIEEKRSTN-RGKGPGNYG 392
>IMGA|AC148607_30.4 RNA-binding region RNP-1 (RNA recognition
motif); Nuclear transport factor 2
chr07_pseudomolecule_IMGAG_V2 26941265-26937031 F
EGN_Mt071002 20080227
Length = 452
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 128/422 (30%), Positives = 202/422 (47%), Gaps = 72/422 (17%)
Query: 1 MAATDGAPTPQMVGNAFVEQYYSILHHDPEQVHRFYHETSILSRPEEDGXXXXXXXXXEI 60
MA+ G+ + VG+ FV QYY +L P+ VH+FY + S + R + D I
Sbjct: 1 MASYQGSVSAAQVGSYFVGQYYQVLRQQPDHVHQFYSDLSSMIRVDGD-YTETASDVLHI 59
Query: 61 NKKILSQDYKSFRVEILSADSQPSYKEGVIVAVTGCLTGTD-NMKRKFAQSFFLAPQDKG 119
+ + S ++ + +EI + +S S+ GVIV VTG + D N K+KF Q+FFLAPQ+KG
Sbjct: 60 HNIVTSLNFST--IEIRTINSLDSWDGGVIVMVTGVVKNKDINRKQKFVQTFFLAPQEKG 117
Query: 120 YFVLNDVFRYVDEYKSVDIESVP---SRDADEITLSDAFAPEPEPN-------------- 162
YFVLND+F++VDE V VP R + +S +FA P +
Sbjct: 118 YFVLNDIFQFVDE-DVVHPNLVPVASDRIDSQPHVSASFAEPPASDYGFEEEARDYVNSV 176
Query: 163 HVPEDIPPSQTAIAE---------------TDASIRKEVSQPLENGKLSVTEKVIPXXXX 207
H+ +D P + ++ E D + +E S P+ N ++ E
Sbjct: 177 HIDDD-PVDKYSLPEQQQQQLQEDFETEVVVDETPVQEASPPVHNVAHTIRET------- 228
Query: 208 XXXXXXXXXXXXXKADSNTQEDAPKKSFASIVNALNE---NAAPFHV-RTSPMKPVEQPR 263
+ + +E A K ++ASI+ A + +AAP H S V QP
Sbjct: 229 ----------PAAPVEESFEEPAKK-TYASILRAKGQSALSAAPQHAPPPSEYNHVTQPA 277
Query: 264 VS---SKPASEAQAPIADVLLEKNNENAGKAH--------AIFVANLPMNATVEQLERAF 312
V ++PA + + + + E E A + + +++V NLP + T ++++ F
Sbjct: 278 VQQSVAQPAFQQSSSASAYVSESGPEAAEEGYRFEEEEVTSVYVRNLPADITEAEIDQEF 337
Query: 313 VEFGPIKTNGIQVRSNKQQGSCFGFVEFESAASMQSALEAAVI-LDNRRLSIEERRANND 371
FG IK +GI +R ++ G C+ FVEFE Q+AL+A+ I L R + IEERR +
Sbjct: 338 KNFGRIKPDGIFIRVRQEIGVCYAFVEFEDVVGTQNALQASPIQLAGRPIYIEERRPSTS 397
Query: 372 RA 373
A
Sbjct: 398 SA 399
>IMGA|AC147517_1.5 RNA-binding region RNP-1 (RNA recognition motif);
Nuclear transport factor 2 chr07_pseudomolecule_IMGAG_V2
27002084-26997832 F EGN_Mt071002 20080227
Length = 452
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 127/422 (30%), Positives = 202/422 (47%), Gaps = 72/422 (17%)
Query: 1 MAATDGAPTPQMVGNAFVEQYYSILHHDPEQVHRFYHETSILSRPEEDGXXXXXXXXXEI 60
MA+ G+ + VG+ FV QYY +L P+ VH+FY + S + R + D I
Sbjct: 1 MASYQGSVSAAQVGSYFVGQYYQVLRQQPDHVHQFYSDLSSMIRVDGD-YTETASDVLHI 59
Query: 61 NKKILSQDYKSFRVEILSADSQPSYKEGVIVAVTGCLTGTD-NMKRKFAQSFFLAPQDKG 119
+ + S ++ + +EI + +S S+ GVIV VTG + D + K+KF Q+FFLAPQ+KG
Sbjct: 60 HNIVTSLNFST--IEIRTINSLDSWDGGVIVMVTGVVKNKDIHRKQKFVQTFFLAPQEKG 117
Query: 120 YFVLNDVFRYVDEYKSVDIESVP---SRDADEITLSDAFAPEPEPN-------------- 162
YFVLND+F++VDE V VP R + +S +FA P +
Sbjct: 118 YFVLNDIFQFVDE-DVVHPNLVPVASDRIDSQPHVSASFAEPPASDYGFEEEARDYVNSV 176
Query: 163 HVPEDIPPSQTAIAE---------------TDASIRKEVSQPLENGKLSVTEKVIPXXXX 207
H+ +D P + ++ E D + +E S P+ N ++ E
Sbjct: 177 HIDDD-PVDKYSLPEQQQQQLQEDFETEVVVDETPVQEASPPVHNVAHTIRET------- 228
Query: 208 XXXXXXXXXXXXXKADSNTQEDAPKKSFASIVNALNE---NAAPFHV-RTSPMKPVEQPR 263
+ + +E A K ++ASI+ A + +AAP H S V QP
Sbjct: 229 ----------PAAPVEESFEEPAKK-TYASILRAKGQSALSAAPQHAPPPSEYNHVTQPA 277
Query: 264 VS---SKPASEAQAPIADVLLEKNNENAGKAH--------AIFVANLPMNATVEQLERAF 312
V ++PA + + + + E E A + + +++V NLP + T ++++ F
Sbjct: 278 VQQSVAQPAFQQSSSASAYVSESGPEAAEEGYRFEEEEVTSVYVRNLPADITEAEIDQEF 337
Query: 313 VEFGPIKTNGIQVRSNKQQGSCFGFVEFESAASMQSALEAAVI-LDNRRLSIEERRANND 371
FG IK +GI +R ++ G C+ FVEFE Q+AL+A+ I L R + IEERR +
Sbjct: 338 KNFGRIKPDGIFIRVRQEIGVCYAFVEFEDVVGTQNALQASPIQLAGRPIYIEERRPSTS 397
Query: 372 RA 373
A
Sbjct: 398 SA 399
>IMGA|AC163324_51.4 Nuclear transport factor 2
chr01_pseudomolecule_IMGAG_V2 12218970-12216479 E
EGN_Mt071002 20080227
Length = 351
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 45/59 (76%)
Query: 74 VEILSADSQPSYKEGVIVAVTGCLTGTDNMKRKFAQSFFLAPQDKGYFVLNDVFRYVDE 132
+EI +A S S+ G IV V+G + DN++RKF Q+FFLAPQ+KG+FVLND+F +V++
Sbjct: 8 IEIKTAHSLESWSGGAIVMVSGSVQIKDNLRRKFMQTFFLAPQEKGFFVLNDIFHFVED 66
>IMGA|AC136449_16.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 29317773-29312110 F
EGN_Mt071002 20080227
Length = 654
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 270 SEAQAPIADVLLEKNNENAG---KAHAIFVANLPMNATVEQLERAFVEFGPIKTNGIQVR 326
++ Q + L ++ E+ G K + +FV NL + T ++L++ F EFG I T+ + +R
Sbjct: 188 NDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTI-TSAVVMR 246
Query: 327 SNKQQGSCFGFVEFESAASMQSALEA 352
+ CFGFV FES A+EA
Sbjct: 247 DGDGKSKCFGFVNFESTDDAARAVEA 272
>IMGA|AC147538_3.4 Nuclear transport factor 2
chr03_pseudomolecule_IMGAG_V2 23968477-23966013 F
EGN_Mt071002 20080227
Length = 123
Score = 48.1 bits (113), Expect = 7e-06, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 10 PQMVGNAFVEQYYSILHHDPEQVHRFYHETSILSRPEEDGXXXXXXXXXEINKKILSQDY 69
P + AFVE YY+ + + Y + S+L+ + I K+ S +
Sbjct: 3 PNALSKAFVEHYYTTFDTNRPNLAALYQDGSMLTFEGQ-----QIMGSQNIVTKLTSLPF 57
Query: 70 KSFRVEILSADSQPS-YKEGVIVAVTGCLT-GTDNMKRKFAQSFFLAPQDKG-YFVLNDV 126
+ I + D QPS G++V V+G L + KF+Q F L P +G Y+V ND+
Sbjct: 58 QQCHHSITTVDCQPSGANGGMLVFVSGNLQLAGEQHALKFSQMFHLIPTPQGSYYVWNDI 117
Query: 127 FR 128
FR
Sbjct: 118 FR 119
>IMGA|AC137701_36.4 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 16974271-16978271 E
EGN_Mt071002 20080227
Length = 382
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 294 IFVANLPMNATVEQLERAFVEFGPIKTNGIQVRSNKQQGSCFGFVEF--ESAASMQSALE 351
+FV+NLP + T QLE+ F E GP++ + + Q FG+V+F E A+ L+
Sbjct: 23 LFVSNLPYSFTNSQLEQTFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVEKDANQAIELK 82
Query: 352 AAVILDNRRLSI---------EERRANNDRARYPSGRGGYRNDRNDS 389
+ ++ +R++ + E RR+ D+ +ND DS
Sbjct: 83 NSSLVGDRKIVVKHAIPRPPRENRRSKPDQEGNEGDLTESKNDDKDS 129