Miyakogusa Predicted Gene
- chr4.CM0229.400.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.CM0229.400.nc + phase: 0
(289 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC146567_3.4 PUR-alpha/beta/gamma, DNA/RNA-binding chr04_ps... 533 e-152
IMGA|AC202467_10.3 PUR-alpha/beta/gamma, DNA/RNA-binding chr04_p... 193 9e-50
>IMGA|AC146567_3.4 PUR-alpha/beta/gamma, DNA/RNA-binding
chr04_pseudomolecule_IMGAG_V2 24121594-24125932 F
EGN_Mt071002 20080227
Length = 293
Score = 533 bits (1373), Expect = e-152, Method: Compositional matrix adjust.
Identities = 261/271 (96%), Positives = 269/271 (99%), Gaps = 2/271 (0%)
Query: 19 DVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYV 78
DVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYV
Sbjct: 25 DVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYV 84
Query: 79 NSDDQDLFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAA 138
NS+DQ+LFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAA
Sbjct: 85 NSEDQELFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAA 144
Query: 139 FRNILAEINEASRLFIMPNQQNSESSERLVGLSDDVGAGFISGHSTQPATSSELNVDRSV 198
FRNILAEINEASRLF++PNQQNSESSERL LSDDVGAGFISGH+TQPATSSELNVDRSV
Sbjct: 145 FRNILAEINEASRLFLLPNQQNSESSERL--LSDDVGAGFISGHNTQPATSSELNVDRSV 202
Query: 199 DLPAQDEIGNLGVSKVIRADQKRFFFDLGSNNRGHFLRISEVAGSDRSSIILPLSGLKQF 258
DLPAQDEIGNLGVSKVIRADQKRFFFDLG+NNRGHFLRISEVAGSDRSSIILPLSGLKQF
Sbjct: 203 DLPAQDEIGNLGVSKVIRADQKRFFFDLGNNNRGHFLRISEVAGSDRSSIILPLSGLKQF 262
Query: 259 HEIVGHFVEITKDRIEGMAVANVRTVDPPQR 289
HEIVGHFVEITKDRIEGM+VANVRT+DPPQR
Sbjct: 263 HEIVGHFVEITKDRIEGMSVANVRTIDPPQR 293
>IMGA|AC202467_10.3 PUR-alpha/beta/gamma, DNA/RNA-binding
chr04_pseudomolecule_IMGAG_V2 24028037-24029485 E
EGN_Mt071002 20080227
Length = 164
Score = 193 bits (490), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 91/93 (97%), Positives = 93/93 (100%)
Query: 19 DVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYV 78
DVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYV
Sbjct: 25 DVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYV 84
Query: 79 NSDDQDLFSKELQLDTKVFYFDIGENRRGRFLK 111
NS+DQ+LFSKELQLDTKVFYFDIGENRRGRFLK
Sbjct: 85 NSEDQELFSKELQLDTKVFYFDIGENRRGRFLK 117
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 68/167 (40%), Gaps = 62/167 (37%)
Query: 82 DQDLFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRN 141
D +L K LQ++ K+FYFD+ EN RGR+LK+SE + S RSTIIVP G + F +
Sbjct: 25 DVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKT-SATRSTIIVPF-----SGISWFLD 78
Query: 142 ILAEINEASRLFIMPNQQNSESSERLVGLSDDVGAGFISGHSTQPATSSELNVDRSVDLP 201
+ NSE E S EL +D V
Sbjct: 79 LFNYY------------VNSEDQELF---------------------SKELQLDTKV--- 102
Query: 202 AQDEIGNLGVSKVIRADQKRFFFDLGSNNRGHFLRISEVAGSDRSSI 248
F+FD+G N RG FL+ AG D++ +
Sbjct: 103 --------------------FYFDIGENRRGRFLKNYFGAGGDQTPV 129
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 211 VSKVIRADQKRFFFDLGSNNRGHFLRISEVAGSDRSSIILPLSGLKQFHEIVGHFV 266
+ K ++ + K F+FDL N RG +L+ISE + RS+II+P SG+ F ++ ++V
Sbjct: 29 LCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYV 84