Miyakogusa Predicted Gene
- chr4.CM0179.450.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.CM0179.450.nd - phase: 1 /partial
(454 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC140546_1.5 Initiation factor eIF-4 gamma, middle; Initiat... 668 0.0
IMGA|AC153354_6.5 Initiation factor eIF-4 gamma, middle; Initiat... 123 2e-28
IMGA|AC165217_11.5 Initiation factor eIF-4 gamma, MA3 chr06_pseu... 59 4e-09
>IMGA|AC140546_1.5 Initiation factor eIF-4 gamma, middle; Initiation
factor eIF-4 gamma, MA3 chr08_pseudomolecule_IMGAG_V2
33611427-33617657 F EGN_Mt071002 20080227
Length = 779
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/454 (73%), Positives = 373/454 (82%), Gaps = 3/454 (0%)
Query: 3 LRTLGNIRLIGELSKQKLVFEKIVHHIVQELLGTSDSKECPAEENVEAICQFFNTIGKQL 62
+RTLGNIRLIGEL KQK+V E+IVHHIVQELLG +DS CPAEENVEAIC FFNTIGKQL
Sbjct: 326 IRTLGNIRLIGELLKQKMVPERIVHHIVQELLGAADSNVCPAEENVEAICHFFNTIGKQL 385
Query: 63 DESPKSRHINDVYFIRLKDLASNPQLAPRLRFMVRDVIDLRANKWIPRREEIKAKTITEI 122
DESPKSR IND+YF RLK+L++NPQLAPR++FMVRDVIDLRA+ W+PRREEIKAKTI+EI
Sbjct: 386 DESPKSRRINDMYFGRLKELSTNPQLAPRMKFMVRDVIDLRASNWVPRREEIKAKTISEI 445
Query: 123 HSEAEKNLGLRPGATASMRNLRGVVSGAXXXXXXXXXXXXXXXXXXXXXXXXXKMPGMPG 182
H EAEKNLGLRPGATA MRN R KMPGMPG
Sbjct: 446 HDEAEKNLGLRPGATAGMRNTRVTGVQGNTGAGGFPIARPGTGGLMPGMPGARKMPGMPG 505
Query: 183 IDNDNWEVPRTRSMSRGDVSGMQVGGRGQAPFVSKSTALNTKLLPQGSGGLISGRNSALV 242
IDNDNWEVPRTRSM RGD+SG Q GGRGQ+P++SK + +N+KLLPQGS GLISG+NSALV
Sbjct: 506 IDNDNWEVPRTRSMPRGDMSGAQTGGRGQSPYLSKPSVINSKLLPQGSSGLISGKNSALV 565
Query: 243 HGGGAPSARPSNIGLSAEPAPEIPSPVKPIPAVP--SPQAPAAKLNTADLHRKTVSLLEE 300
GGG PSA PSNI EPAP+IPSPVKP+ A PQAPA KLN DLHRKTVSLLEE
Sbjct: 566 LGGGTPSALPSNIVSGTEPAPQIPSPVKPVSAASPEKPQAPAVKLNIDDLHRKTVSLLEE 625
Query: 301 YFSVRILDEALQCVEELKAPAYHHEVVKEAIALALDKSPPCVEPVAKLLEHLFKKKILSA 360
YF+VR+LDEALQCVEELKAP YH EVVKEAI+L LDKSPP VEPVA L+E+LF KKIL+A
Sbjct: 626 YFNVRLLDEALQCVEELKAPTYHPEVVKEAISLGLDKSPPRVEPVANLIEYLFTKKILTA 685
Query: 361 SDIGTGCLSFGSTLDDIGIDLPKAPSNFGEIIGKLILAGGLDFKVVSEILKKVEDDWFQK 420
DIGTGCL F S LDDIGIDLPKAP+NFGEIIGKL+L+ GLDFKVV EILKKV DD+FQK
Sbjct: 686 RDIGTGCLLFASLLDDIGIDLPKAPNNFGEIIGKLVLSAGLDFKVVKEILKKVGDDYFQK 745
Query: 421 AFFDSALQVITSSASGQAVVDSQASDVEACRSVL 454
A F+SA+QVI SSASGQAV+DSQASD+EAC+++
Sbjct: 746 AIFNSAVQVI-SSASGQAVLDSQASDIEACQALF 778
>IMGA|AC153354_6.5 Initiation factor eIF-4 gamma, middle; Initiation
factor eIF-4 gamma, MA3 chr08_pseudomolecule_IMGAG_V2
2563256-2573006 E EGN_Mt071002 20080227
Length = 1749
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 89/125 (71%), Gaps = 8/125 (6%)
Query: 4 RTLGNIRLIGELSKQKLVFEKIVHHIVQELLGTSDSKEC--PAEENVEAICQFFNTIGKQ 61
R LGNIRLIGEL K+K++ E+I+H +++LLG +C P EE+VEA+C+ +TIG+
Sbjct: 1229 RMLGNIRLIGELYKKKMLTERIMHECIKKLLG-----QCQDPDEEDVEALCKLMSTIGEM 1283
Query: 62 LDESPKSRHINDVYFIRLKDLASNPQLAPRLRFMVRDVIDLRANKWIPRREEIKAKTITE 121
+D PK++ DVYF RLK L++N L+ R+RFM++DVIDLR N+W RR+ K I E
Sbjct: 1284 IDH-PKAKEHMDVYFERLKILSNNMNLSSRVRFMLKDVIDLRRNRWQVRRKVDGPKKIEE 1342
Query: 122 IHSEA 126
+H +A
Sbjct: 1343 VHRDA 1347
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 270 KPIPAVP--SPQAPAAKLNTA---DLHRKTVSLLEEYFSVRILDEALQCVEELKAPAYHH 324
+P+ P PQ P N + L ++S + EY+S R ++E QC+++L +P +H
Sbjct: 1536 RPVATSPHAQPQGPIVSQNASTDEQLRDMSLSAIREYYSARDVNEVAQCIKDLNSPNFHP 1595
Query: 325 EVVKEAIALALDKSPPCVEPVAKLLEHLFKKK--ILSASDIGTGCLSFGSTLDDIGIDLP 382
+V + + ++ + +AKLL L K + +LS + + G + STL+D D P
Sbjct: 1596 SMVSLWVTDSFERKDAERDLLAKLLVKLGKSQDGLLSPTQLIEGFETVLSTLEDAVNDAP 1655
Query: 383 KAPSNFGEIIGKLI 396
KAP G I +LI
Sbjct: 1656 KAPEFLGRIFAELI 1669
>IMGA|AC165217_11.5 Initiation factor eIF-4 gamma, MA3
chr06_pseudomolecule_IMGAG_V2 7172971-7169785 H
EGN_Mt071002 20080227
Length = 710
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 289 DLHRKTVSLLEEYFSVRILDEALQCVEELKAPAYHHEVVKEAIALALDKSPPCVEPVAKL 348
D+ + + L+EY EA +C+++L P +HHE+VK A+ +A++K P+ L
Sbjct: 281 DVKARINNFLKEYVVSGDKTEAFRCIKDLNVPFFHHEIVKRALIMAMEKRQAET-PLLDL 339
Query: 349 LEHLFKKKILSASDIGTGCLSFGSTLDDIGIDLPKAPSNFGEIIGKLILAGGL 401
L+ +K ++ S + G T+DD+ +D+P A +++ K G L
Sbjct: 340 LKEAAEKGFINTSQMSKGFTRLIETVDDLSLDIPNARGILQQLMSKAASDGWL 392
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 297 LLEEYFSVRILDEALQCVEELKAPAYHHEVVKEAIALALDKSPPCVEPVAKLLEHLFKKK 356
LLEEY S + EA +C++EL P +HHEVVK+++ ++K E + LL+ F+
Sbjct: 594 LLEEYESGGDIKEACRCMKELGMPFFHHEVVKKSLVKIIEKKN---ERLWGLLKECFESG 650
Query: 357 ILSASDIGTGCLSFGSTLDDIGIDLPKAPSNFGEIIGKLILAGGLD 402
+++ + G LDD+ +D+P A + F + K G LD
Sbjct: 651 LITMYQMVKGFGRVEEALDDLALDVPDAKNQFAYYVEKAKNEGWLD 696
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 284 KLNTA--DLHRKTVSLLEEYFSVRILDEALQCVEELKAPAYHHEVVKEAIALALDKSPPC 341
K N A + +K ++EEYF+ + + V E+ P Y + VK+ +++++D+
Sbjct: 110 KTNAALEEYKKKATIIVEEYFATDDVVATMSEVREIGKPEYSYYFVKKLVSMSMDRHDKE 169
Query: 342 VEPVAKLLEHLFKKKILSASDIGTGCLSFGSTLDDIGIDLP 382
E A LL L+ I+ S + G + DD+ +D+P
Sbjct: 170 KEMAAILLSALY-ADIIHPSQVYKGFTKLVESADDLIVDIP 209