Miyakogusa Predicted Gene
- chr4.CM0079.170.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.CM0079.170.nc - phase: 0
(445 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC127168_20.5 RNA-binding region RNP-1 (RNA recognition mot... 560 e-160
IMGA|CU457783_12.3 RNA-binding region RNP-1 (RNA recognition mot... 410 e-115
IMGA|AC202500_12.4 RNA-binding region RNP-1 (RNA recognition mot... 378 e-105
IMGA|AC152402_23.4 RNA-binding region RNP-1 (RNA recognition mot... 378 e-105
IMGA|AC146330_10.5 RNA-binding region RNP-1 (RNA recognition mot... 362 e-100
IMGA|CT868696_6.4 RNA-binding region RNP-1 (RNA recognition moti... 129 3e-30
IMGA|AC144483_30.5 RNA-binding region RNP-1 (RNA recognition mot... 115 4e-26
IMGA|AC136449_16.5 RNA-binding region RNP-1 (RNA recognition mot... 106 2e-23
IMGA|AC122728_50.4 Polyadenylate binding protein, human types 1,... 99 3e-21
IMGA|AC174301_43.4 Polyadenylate binding protein, human types 1,... 97 2e-20
IMGA|AC148486_23.5 Ribosomal protein S2; Polyadenylate binding p... 95 5e-20
IMGA|AC139882_12.5 RNA-binding region RNP-1 (RNA recognition mot... 89 4e-18
IMGA|AC202362_16.3 RNA-binding region RNP-1 (RNA recognition mot... 83 3e-16
IMGA|AC174312_11.5 RNA-binding region RNP-1 (RNA recognition mot... 76 2e-14
IMGA|AC203559_11.4 RNA-binding region RNP-1 (RNA recognition mot... 70 1e-12
IMGA|AC202369_17.3 RNA-binding region RNP-1 (RNA recognition mot... 70 1e-12
IMGA|AC150977_25.5 RNA-binding region RNP-1 (RNA recognition mot... 70 2e-12
IMGA|AC121232_18.4 RNA-binding region RNP-1 (RNA recognition mot... 66 3e-11
IMGA|CR955006_36.5 RNA-binding region RNP-1 (RNA recognition mot... 65 5e-11
IMGA|AC146743_25.4 U2 auxiliary factor small subunit chr00_pseud... 64 1e-10
IMGA|AC157981_22.5 RNA-binding region RNP-1 (RNA recognition mot... 62 5e-10
IMGA|AC137522_14.4 RNA-binding region RNP-1 (RNA recognition mot... 62 5e-10
IMGA|AC144431_42.4 RNA-binding region RNP-1 (RNA recognition mot... 62 5e-10
IMGA|AC148526_13.4 RNA-binding region RNP-1 (RNA recognition mot... 61 7e-10
IMGA|AC135100_25.5 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis... 60 1e-09
IMGA|AC174143_20.4 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis... 60 1e-09
IMGA|CU041253_29.4 RNA-binding region RNP-1 (RNA recognition mot... 59 4e-09
IMGA|AC157373_30.4 RNA-binding region RNP-1 (RNA recognition mot... 58 7e-09
IMGA|AC202518_12.3 RNA-binding region RNP-1 (RNA recognition mot... 55 6e-08
IMGA|AC145470_21.4 SWAP/Surp; RNA-binding region RNP-1 (RNA reco... 54 9e-08
IMGA|AC158464_2.5 RNA-binding region RNP-1 (RNA recognition moti... 54 9e-08
IMGA|CU024864_17.4 RNA-binding region RNP-1 (RNA recognition mot... 53 3e-07
IMGA|AC134242_14.5 RNA-binding region RNP-1 (RNA recognition mot... 52 4e-07
IMGA|AC146705_26.5 RNA-binding region RNP-1 (RNA recognition mot... 52 7e-07
IMGA|CU459035_17.3 RNA-binding region RNP-1 (RNA recognition mot... 52 7e-07
IMGA|AC119413_25.4 RNA-binding region RNP-1 (RNA recognition mot... 51 7e-07
IMGA|CT030180_20.5 RNA-binding region RNP-1 (RNA recognition mot... 51 9e-07
IMGA|AC131026_44.4 RNA-binding region RNP-1 (RNA recognition mot... 51 9e-07
IMGA|AC174277_12.4 RNA-binding region RNP-1 (RNA recognition mot... 50 2e-06
IMGA|CT963115_17.5 RNA-binding region RNP-1 (RNA recognition mot... 50 2e-06
IMGA|AC122162_7.4 RNA-binding region RNP-1 (RNA recognition moti... 50 3e-06
IMGA|AC146760_9.5 RNA-binding region RNP-1 (RNA recognition moti... 49 3e-06
IMGA|AC149546_31.4 RNA-binding region RNP-1 (RNA recognition mot... 48 8e-06
IMGA|AC134242_17.5 RNA-binding region RNP-1 (RNA recognition mot... 48 9e-06
IMGA|AC146333_33.4 RNA-binding region RNP-1 (RNA recognition mot... 48 1e-05
IMGA|AC134242_43.5 RNA-binding region RNP-1 (RNA recognition mot... 48 1e-05
IMGA|AC202373_19.4 RNA-binding region RNP-1 (RNA recognition mot... 47 1e-05
IMGA|AC140027_27.5 RNA-binding region RNP-1 (RNA recognition mot... 47 1e-05
IMGA|CR962128_15.4 RNA-binding region RNP-1 (RNA recognition mot... 47 2e-05
IMGA|CT009540_36.5 RNA-binding region RNP-1 (RNA recognition mot... 47 2e-05
IMGA|AC145289_29.5 RNA-binding region RNP-1 (RNA recognition mot... 47 2e-05
IMGA|AC202473_6.4 RNA-binding region RNP-1 (RNA recognition moti... 47 2e-05
IMGA|AC146704_27.4 RNA-binding region RNP-1 (RNA recognition mot... 46 2e-05
IMGA|AC129091_32.5 RNA-binding region RNP-1 (RNA recognition mot... 46 3e-05
IMGA|AC125368_8.5 RNA-binding region RNP-1 (RNA recognition moti... 46 3e-05
IMGA|AC160838_3.5 RNA-binding region RNP-1 (RNA recognition moti... 46 4e-05
IMGA|AC144541_44.4 RNA-binding region RNP-1 (RNA recognition mot... 45 5e-05
IMGA|CR936368_46.5 RNA-binding region RNP-1 (RNA recognition mot... 45 5e-05
IMGA|CU062643_11.3 RNA-binding region RNP-1 (RNA recognition mot... 45 8e-05
IMGA|AC187356_26.4 RNA-binding region RNP-1 (RNA recognition mot... 45 8e-05
IMGA|AC150443_40.5 RNA-binding region RNP-1 (RNA recognition mot... 44 1e-04
IMGA|AC144431_18.4 RNA-binding region RNP-1 (RNA recognition mot... 44 1e-04
IMGA|AC146743_17.4 RNA-binding region RNP-1 (RNA recognition mot... 44 1e-04
IMGA|AC141435_12.5 RNA-binding region RNP-1 (RNA recognition mot... 43 2e-04
IMGA|AC149134_50.5 RNA-binding region RNP-1 (RNA recognition mot... 42 4e-04
IMGA|CT033766_5.5 U2 auxiliary factor small subunit chr05_pseudo... 42 4e-04
IMGA|AC139707_45.4 RNA-binding region RNP-1 (RNA recognition mot... 42 4e-04
IMGA|AC139854_19.4 RNA-binding region RNP-1 (RNA recognition mot... 42 6e-04
>IMGA|AC127168_20.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 28623498-28619047 F
EGN_Mt071002 20080227
Length = 454
Score = 560 bits (1444), Expect = e-160, Method: Compositional matrix adjust.
Identities = 274/342 (80%), Positives = 291/342 (85%), Gaps = 7/342 (2%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
+EIRTIWLGDLHHWMDE ++HNCFAHTGEV SAKVIRNKQTGQSEGYGFVEFY+RA AEK
Sbjct: 113 EEIRTIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEK 172
Query: 171 VLQNFNGTMMPNTDQAFRLNWASFSA----GERRSEAATSDLSIFVGDLAIDVTDAMLQE 226
VLQNFNGTMMPNTDQAFRLNWA+FSA GERRS ATSDLS+FVGDLAIDVTDAMLQE
Sbjct: 173 VLQNFNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQE 232
Query: 227 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT 286
TF S+FSSIKGAKVVIDSNTGRSKGYGFVRFGDE+ERTRAMTEMNGV+CS+RPMRVGVAT
Sbjct: 233 TFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVAT 292
Query: 287 PKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQ 346
PKKTYG V+ GG SNGA+AQGSQS+GDSNNTTIFVGGLDSDISDEDLRQ
Sbjct: 293 PKKTYGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQ 352
Query: 347 PFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHW 406
PFLQFGDV+SVKIPVGKGCGFVQ ADRKNAEEAI LNGTVIGKQTVRLSWGRSPGNKH
Sbjct: 353 PFLQFGDVISVKIPVGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNKHG 412
Query: 407 RSD---SNXXXXXXXXXXXXXXXARQNQDMGMHPTAAIQGAS 445
R+D ARQNQD+ M P AA+QGAS
Sbjct: 413 RNDSNGYGGHGYGGHGYGSNGYAARQNQDIAMQPAAAVQGAS 454
>IMGA|CU457783_12.3 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 29353518-29349911 E
EGN_Mt071002 20080227
Length = 420
Score = 410 bits (1054), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/296 (65%), Positives = 229/296 (77%), Gaps = 15/296 (5%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
+T+W+GDLHHWMDENY+H CFA TGE+ S KVIRNKQT Q+EGYGFVEF S TAEKVLQ
Sbjct: 93 KTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQ 152
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
+ G +MPNT+Q FRLNWA+FS G+ + DLSIFVGDLA DVTD ML ETF ++
Sbjct: 153 TYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYP 212
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
S+K AKVV D+NTGRSKGYGFVRFGD+ ER++A+ EMNGVFCS+R MR+G ATP+K+ G
Sbjct: 213 SVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGY 272
Query: 294 XXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGD 353
GG SNG SQSD DS NTTIFVGGLD + EDLRQPF Q+G+
Sbjct: 273 QQ-----------GGQ-SNGTP---SQSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGE 317
Query: 354 VVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSD 409
+VSVKIPVGKGCGFVQFA+R NAEEA+ LNGT +GKQTVRLSWGR+P NK +RS+
Sbjct: 318 IVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWGRNPANKQFRSE 373
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 325 SNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGK------GCGFVQFADRKNAEE 378
++N T++VG L + + L + F G++ S+K+ K G GFV+F AE+
Sbjct: 90 ADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEK 149
Query: 379 AIHALNGTVIG--KQTVRLSWGRSPGNKHWRSD 409
+ G ++ +Q RL+W H RSD
Sbjct: 150 VLQTYAGMLMPNTEQPFRLNWATFSTGDHKRSD 182
>IMGA|AC202500_12.4 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 34397955-34393689 F
EGN_Mt071002 20080227
Length = 411
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/301 (60%), Positives = 225/301 (74%), Gaps = 14/301 (4%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
DE++T+W+GDL +WMDENY++NCF+HTGEV S KVIRNKQT QSEGYGF+EF SRA AE+
Sbjct: 71 DEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAER 130
Query: 171 VLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGS 230
VLQ FNGT+MPN Q FRLNWA+FS+GE+R + + D +IFVGDLA DV+D L E F +
Sbjct: 131 VLQTFNGTIMPNGGQNFRLNWATFSSGEKRHD-DSPDYTIFVGDLAADVSDHHLTEVFRT 189
Query: 231 RFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
R++S+KGAKVVID TGR+KGYGFVRF DE+E+ RAMTEM GV CS RPMR+G A+ K
Sbjct: 190 RYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPAS-NKN 248
Query: 291 YGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQ 350
G +P GA Q++ D NNTTIFVG LD +++DE L+Q F Q
Sbjct: 249 LGTQTSKASYQ-------NPQGGA-----QNENDPNNTTIFVGNLDPNVTDEHLKQVFTQ 296
Query: 351 FGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSDS 410
+G++V VKIP GK CGFVQFADR +AEEA+ LNGT++G Q VRLSWGRSP NK + D
Sbjct: 297 YGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQDP 356
Query: 411 N 411
N
Sbjct: 357 N 357
>IMGA|AC152402_23.4 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 34279564-34283829 F
EGN_Mt071002 20080227
Length = 411
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/301 (60%), Positives = 225/301 (74%), Gaps = 14/301 (4%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
DE++T+W+GDL +WMDENY++NCF+HTGEV S KVIRNKQT QSEGYGF+EF SRA AE+
Sbjct: 71 DEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAER 130
Query: 171 VLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGS 230
VLQ FNGT+MPN Q FRLNWA+FS+GE+R + + D +IFVGDLA DV+D L E F +
Sbjct: 131 VLQTFNGTIMPNGGQNFRLNWATFSSGEKRHD-DSPDYTIFVGDLAADVSDHHLTEVFRT 189
Query: 231 RFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
R++S+KGAKVVID TGR+KGYGFVRF DE+E+ RAMTEM GV CS RPMR+G A+ K
Sbjct: 190 RYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPAS-NKN 248
Query: 291 YGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQ 350
G +P GA Q++ D NNTTIFVG LD +++DE L+Q F Q
Sbjct: 249 LGTQTSKASYQ-------NPQGGA-----QNENDPNNTTIFVGNLDPNVTDEHLKQVFTQ 296
Query: 351 FGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSDS 410
+G++V VKIP GK CGFVQFADR +AEEA+ LNGT++G Q VRLSWGRSP NK + D
Sbjct: 297 YGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQDP 356
Query: 411 N 411
N
Sbjct: 357 N 357
>IMGA|AC146330_10.5 RNA-binding region RNP-1 (RNA recognition motif)
chr02_pseudomolecule_IMGAG_V2 23524883-23519252 F
EGN_Mt071002 20080227
Length = 428
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 170/295 (57%), Positives = 215/295 (72%), Gaps = 7/295 (2%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
+E+RT+W+GDL +W+DENY+ +CF+HTGEV+S K+IRNK TGQ EGYGF+EF S + AE+
Sbjct: 12 EEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAER 71
Query: 171 VLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGS 230
VLQ +NGT MP T+Q FRLNWASF GERR +A D SIFVGDLA DVTD +LQETF +
Sbjct: 72 VLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAG-PDHSIFVGDLAPDVTDYLLQETFRT 130
Query: 231 RFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
+ S++GAKVV D NTGRSKGYGFV+F DE+ER RAM+EMNGV+CS RPMR+ ATPKKT
Sbjct: 131 HYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKT 190
Query: 291 YGXXXXXXXXXAVVLAGG---HPSNG---AVAQGSQSDGDSNNTTIFVGGLDSDISDEDL 344
G +P A + D NNTTI+VG LD ++S+E+L
Sbjct: 191 TGYQQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPEYDVNNTTIYVGNLDLNVSEEEL 250
Query: 345 RQPFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGR 399
+Q FLQFG++VSVK+ GK CGFVQF R +AEEAI + G ++G+Q +R+SWGR
Sbjct: 251 KQNFLQFGEIVSVKVHPGKACGFVQFGARASAEEAIQKMQGKILGQQVIRVSWGR 305
>IMGA|CT868696_6.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 30876631-30887902 E
EGN_Mt071002 20080227
Length = 436
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 150/318 (47%), Gaps = 41/318 (12%)
Query: 113 IRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL 172
R++++G++H + + + F G + K+IR +++ YGFV+++ RA+A +
Sbjct: 33 CRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAI 88
Query: 173 QNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRF 232
+G + QA ++NWA ++ R E + ++FVGDL+ +VTDA L F S +
Sbjct: 89 MTLHGRQL--YGQALKVNWA-YANSSR--EDTSGHFNVFVGDLSPEVTDATLFACF-SVY 142
Query: 233 SSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK--T 290
++ A+V+ D TGRSKGYGFV F D + A+ +M G + NR +R AT +
Sbjct: 143 TTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGS 202
Query: 291 YGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNN---TTIFVGGLDSD--------- 338
AVVL G G S D NN TT++VG L D
Sbjct: 203 SNEEKINDSQNAVVLTNGSSDGG--QDNSNEDAPENNPSYTTVYVGNLPHDTALGGQLQC 260
Query: 339 -------------ISDEDLRQPFLQFGDVV--SVKIPVGKGCGFVQFADRKNAEEAIHAL 383
++ +L F G V V++ GKG GFV++ + A AI
Sbjct: 261 GMAAVLAVTAACLVTQAELHCQFHALGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMA 320
Query: 384 NGTVIGKQTVRLSWGRSP 401
NG + +T++ SWG P
Sbjct: 321 NGRPVRGKTMKCSWGSKP 338
>IMGA|AC144483_30.5 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 31240580-31235784 E
EGN_Mt071002 20080227
Length = 402
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 144/297 (48%), Gaps = 26/297 (8%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R++++G++H + E + F+ G + K+IR +++ YGFV+++ R++A +
Sbjct: 46 RSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIV 101
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
NG + Q+ ++NWA ++ G+R E + IFVGDL+ +VTDA L F S +S
Sbjct: 102 TLNGRNI--FGQSIKVNWA-YTRGQR--EDTSGHFHIFVGDLSPEVTDATLYACF-SAYS 155
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
S A+V+ D TGRS+G+GF E A+ ++ G + +R +R AT
Sbjct: 156 SCSDARVMWDQKTGRSRGFGF-------EAQSAINDLTGKWLGSRQIRCNWATKGANMNG 208
Query: 294 XXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNN--TTIFVGGLDSD-----ISDEDLRQ 346
+VV S A S + N TT++VG L + ++ DL
Sbjct: 209 ENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEARIHTVTSVDLHH 268
Query: 347 PF--LQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSP 401
F L G + V++ KG GFV+++ A AI N + + ++ SWG P
Sbjct: 269 HFHALGVGTIEDVRVQRDKGFGFVRYSTHGEAALAIQMGNTRFLFGKPIKCSWGSKP 325
>IMGA|AC136449_16.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 29317773-29312110 F
EGN_Mt071002 20080227
Length = 654
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 144/299 (48%), Gaps = 29/299 (9%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++ +L +D +H+ F+ G ++S KV + +GQS+GYGFV+F + A+K ++
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLS-IFVGDLAIDVTDAMLQETFGSRFSS 234
NG ++ N Q + + ER S + + +FV +L+ TD L++TFG F +
Sbjct: 183 NGMLL-NDKQVYVGPF--LRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGE-FGT 238
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXX 294
I A V+ D + G+SK +GFV F ++ RA+ +NG ++ VG A K
Sbjct: 239 ITSAVVMRDGD-GKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSERE-- 295
Query: 295 XXXXXXXAVVLAGGHPSNGAVAQGSQSDGDS-NNTTIFVGGLDSDISDEDLRQPFLQFGD 353
H Q + D ++V LD I+DE L++ F +G
Sbjct: 296 --------------HELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGT 341
Query: 354 VVSVKI---P--VGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWR 407
+ S K+ P V +G GFV F+ + A A+ +NG ++ + + ++ + ++ R
Sbjct: 342 ITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRAR 400
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 133/280 (47%), Gaps = 42/280 (15%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL + ++ +++ F G+VVS +V R+ T +S GYG+V + + A + L
Sbjct: 35 SLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDV 94
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N T P ++ R+ ++ R+S +IF+ +L + L +TF S F +
Sbjct: 95 LNFT--PLNNRPIRIMYSHRDPSIRKSGQG----NIFIKNLDKAIDHKALHDTFSS-FGN 147
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXX 294
I KV +D +G+SKGYGFV+F E +A+ ++NG+ +++ + VG K
Sbjct: 148 ILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRK------ 200
Query: 295 XXXXXXXAVVLAGGHPSNGAVAQGSQSDGD-SNNTTIFVGGLDSDISDEDLRQPFLQFGD 353
Q +S GD + +FV L +D++L++ F +FG
Sbjct: 201 ----------------------QERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGT 238
Query: 354 VVSVKIP-----VGKGCGFVQFADRKNAEEAIHALNGTVI 388
+ S + K GFV F +A A+ ALNG I
Sbjct: 239 ITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKI 278
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 37/190 (19%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
S++VGDL ++VTD+ L + F ++ + +V D T RS GYG+V + + + RA+
Sbjct: 35 SLYVGDLDMNVTDSQLYDLF-NQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 93
Query: 269 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 328
+N +NRP+R+ + + PS QG+
Sbjct: 94 VLNFTPLNNRPIRI---------------------MYSHRDPSIRKSGQGN--------- 123
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV-----GKGCGFVQFADRKNAEEAIHAL 383
IF+ LD I + L F FG+++S K+ V KG GFVQF + A++AI L
Sbjct: 124 -IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 384 NGTVIGKQTV 393
NG ++ + V
Sbjct: 183 NGMLLNDKQV 192
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI------PVGKGCGFVQFADRKNAEEAIH 381
T+++VG LD +++D L F Q G VVSV++ G G+V +++ ++A A+
Sbjct: 34 TSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 93
Query: 382 ALNGTVIGKQTVRLSW 397
LN T + + +R+ +
Sbjct: 94 VLNFTPLNNRPIRIMY 109
>IMGA|AC122728_50.4 Polyadenylate binding protein, human types 1, 2,
3, 4 chr03_pseudomolecule_IMGAG_V2 29868052-29861846 E
EGN_Mt071002 20080227
Length = 414
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 136/276 (49%), Gaps = 40/276 (14%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL H + ++ +++ F G+VVS ++ R+ + QS GYG+V F + A K +
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDV 84
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N T P ++ R+ ++ R+S AA +IF+ +L + L +TF S F +
Sbjct: 85 LNFT--PLNNKPIRIMYSHRDPSVRKSGAA----NIFIKNLDRAIDHKALYDTF-SIFGN 137
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXX 294
I K+ +D+ +G SKGYGFV+F +E A+ ++NG+ +++P+ V
Sbjct: 138 ILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV------------ 184
Query: 295 XXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDV 354
GH + S+ NN ++V L ++D+DL+ F ++G +
Sbjct: 185 -------------GHFQRKQDRDNALSNAKFNN--VYVKNLSESVTDDDLKNTFGEYGTI 229
Query: 355 VSVKIP-----VGKGCGFVQFADRKNAEEAIHALNG 385
S + K GFV F + A EA+ ALNG
Sbjct: 230 TSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNG 265
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 141/300 (47%), Gaps = 31/300 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++ +L +D +++ F+ G ++S K+ + +G S+GYGFV+F + +A+ +
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDKL 172
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDL--SIFVGDLAIDVTDAMLQETFGSRFS 233
NG M+ N + F + R A ++ +++V +L+ VTD L+ TFG +
Sbjct: 173 NG-MLLNDKPVY---VGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFG-EYG 227
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
+I A V+ D + G+SK +GFV F + + A+ +NG ++ VG A K
Sbjct: 228 TITSAVVMRDVD-GKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKK----- 281
Query: 294 XXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDS-NNTTIFVGGLDSDISDEDLRQPFLQFG 352
+ L H Q + D +++ LD ++DE L + F +FG
Sbjct: 282 -----YERELELKERH------EQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFG 330
Query: 353 DVVSVKIP-----VGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWR 407
V S KI + +G GFV F+ + A A+ +NG ++ + + ++ + + R
Sbjct: 331 TVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKAR 390
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 37/190 (19%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
S++VGDL DVTD+ L + F ++ + ++ D + +S GYG+V F + ++ +AM
Sbjct: 25 SLYVGDLDHDVTDSQLYDLF-NQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMD 83
Query: 269 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 328
+N +N+P+R+ + + PS + G +N
Sbjct: 84 VLNFTPLNNKPIRI---------------------MYSHRDPS-------VRKSGAAN-- 113
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP-----VGKGCGFVQFADRKNAEEAIHAL 383
IF+ LD I + L F FG+++S KI + KG GFVQF + ++A+ AI L
Sbjct: 114 -IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKL 172
Query: 384 NGTVIGKQTV 393
NG ++ + V
Sbjct: 173 NGMLLNDKPV 182
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI------PVGKGCGFVQFADRKNAEEAIH 381
T+++VG LD D++D L F Q G VVSV+I G G+V F++ +A +A+
Sbjct: 24 TSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMD 83
Query: 382 ALNGTVIGKQTVRLSWG-RSP 401
LN T + + +R+ + R P
Sbjct: 84 VLNFTPLNNKPIRIMYSHRDP 104
>IMGA|AC174301_43.4 Polyadenylate binding protein, human types 1, 2,
3, 4 chr01_pseudomolecule_IMGAG_V2 14998974-14995422 E
EGN_Mt071002 20080227
Length = 534
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 137/287 (47%), Gaps = 40/287 (13%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
T+++GDLH + + ++ F+ ++SA+V ++ TG+S YG+V S A + ++
Sbjct: 16 TLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIEL 75
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N + + + R+ W S A R+S ++FV +LA + + L + F ++ +
Sbjct: 76 KNHSSL--NGKVIRVMWLSRDADARKSGKG----NVFVKNLAASIDNVGLHDLF-QKYGN 128
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXX 294
I +K+ S G+SKG+G+++F E A+ +MNG ++ + VG K
Sbjct: 129 ILSSKIA-RSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRK------ 181
Query: 295 XXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDV 354
++ S D D+ T ++V LD ++++ L + F FG +
Sbjct: 182 ---------------------SERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKI 220
Query: 355 VSVKIPV-----GKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLS 396
VS+ I KG GFV + +A A+ A++G+ G + + ++
Sbjct: 221 VSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVA 267
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 133/282 (47%), Gaps = 39/282 (13%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L +D +H+ F G ++S+K+ R+ + G+S+G+G+++F S +A +Q
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIARS-EDGKSKGFGYIQFDSEESANVAIQKM 163
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDL-----SIFVGDLAIDVTDAMLQETFGS 230
NG+ + + ++ F R+SE + DL +++V +L VT+ L E F S
Sbjct: 164 NGSTVRDK----QIYVGKFI---RKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSS 216
Query: 231 RFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
F I + D N G+SKG+GFV + ++ RAM M+G ++ + V A K
Sbjct: 217 -FGKIVSLAIKKDEN-GQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKK-- 272
Query: 291 YGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQ 350
+L G GS I+V +D+ + DE+LR F
Sbjct: 273 --------VEREQILHHLFVEKGLKHMGS---------NIYVKNIDTSVGDEELRDHFSA 315
Query: 351 FGDVVSVKIP-----VGKGCGFVQFADRKNAEEAIHALNGTV 387
G+V+S K+ KG GFV F+ A +++ NG +
Sbjct: 316 CGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGEL 357
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 43/199 (21%)
Query: 198 ERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRF 257
E+ + A+ +++VGDL DVTDA L + F S F+++ A+V DS TG+S YG+V
Sbjct: 5 EKDAVPASPAATLYVGDLHSDVTDAQLYKAF-SEFNTLISARVCKDSATGKSLCYGYVNL 63
Query: 258 GDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQ 317
E RA+ N + + +RV +
Sbjct: 64 SSHQEAIRAIELKNHSSLNGKVIRVMWLS------------------------------- 92
Query: 318 GSQSDGDSNNT---TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP-----VGKGCGFVQ 369
D D+ + +FV L + I + L F ++G+++S KI KG G++Q
Sbjct: 93 ---RDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYIQ 149
Query: 370 FADRKNAEEAIHALNGTVI 388
F ++A AI +NG+ +
Sbjct: 150 FDSEESANVAIQKMNGSTV 168
>IMGA|AC148486_23.5 Ribosomal protein S2; Polyadenylate binding
protein, human types 1, 2, 3, 4
chr01_pseudomolecule_IMGAG_V2 6658115-6663331 F
EGN_Mt071002 20080227
Length = 647
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 145/299 (48%), Gaps = 28/299 (9%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++ +L +D +H+ F+ G+++S K+ + +GQS+GYGFV+F + +A+ +
Sbjct: 122 IFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDG-SGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSE--AATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
NG M+ N Q F F + R + T +++V +L+ T+ L+ FG+ +
Sbjct: 181 NG-MLINDKQVF---VGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGA-YG 235
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
+I A ++ D++ GRSK +GFV F + + +A+ +NG ++ VG A K
Sbjct: 236 TITSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQ 294
Query: 294 XXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGD 353
V +V Q +++ LD I+DE L++ F +FG
Sbjct: 295 ELKGRFEQTV--------KESVVDKFQG------LNLYLKNLDDSITDEKLKEMFSEFGT 340
Query: 354 VVSVKI---P--VGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWR 407
+ S KI P V +G GFV F+ + A A+ +NG +I + + ++ + ++ R
Sbjct: 341 ITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRAR 399
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 135/279 (48%), Gaps = 40/279 (14%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL ++++ +++ F G+VVS +V R+ T +S GYG+V F + A + L
Sbjct: 33 SLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDV 92
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N T P +++ R+ ++ R+S A +IF+ +L + L +TF S F
Sbjct: 93 LNFT--PMNNKSIRVMYSHRDPSSRKSGTA----NIFIKNLDKTIDHKALHDTFSS-FGQ 145
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXX 294
I K+ D +G+SKGYGFV+F E+ A+ ++NG+ +++ + VG K+
Sbjct: 146 IMSCKIATDG-SGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDN- 203
Query: 295 XXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDV 354
VL S NN ++V L +++DL+ F +G +
Sbjct: 204 ---------VL---------------SKTKFNN--VYVKNLSESFTEDDLKNEFGAYGTI 237
Query: 355 VSVKIP-----VGKGCGFVQFADRKNAEEAIHALNGTVI 388
S + K GFV F + ++A +A+ ALNG +
Sbjct: 238 TSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKV 276
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 37/190 (19%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
S++VGDL ++V D+ L + F ++ + +V D T RS GYG+V F + + RA+
Sbjct: 33 SLYVGDLEVNVNDSQLYDLF-NQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALD 91
Query: 269 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 328
+N +N+ +RV + + PS S+ G +N
Sbjct: 92 VLNFTPMNNKSIRV---------------------MYSHRDPS-------SRKSGTAN-- 121
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV-----GKGCGFVQFADRKNAEEAIHAL 383
IF+ LD I + L F FG ++S KI KG GFVQF +A+ AI L
Sbjct: 122 -IFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 384 NGTVIGKQTV 393
NG +I + V
Sbjct: 181 NGMLINDKQV 190
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 310 PSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI------PVGK 363
PSNG V + T+++VG L+ +++D L F Q G VVSV++
Sbjct: 17 PSNGVVPNVA---NQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSL 73
Query: 364 GCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWG-RSPGNK 404
G G+V F + ++A A+ LN T + +++R+ + R P ++
Sbjct: 74 GYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSR 115
>IMGA|AC139882_12.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 15467244-15472639 E
EGN_Mt071002 20080227
Length = 379
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 106/223 (47%), Gaps = 19/223 (8%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
T ++G+L + E + F G VV+ V +++ T Q +GYGFVEF S A+ ++
Sbjct: 26 TAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKV 85
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N M+ + R+N AS +++S ++L F+G+L DV + +L +TF +
Sbjct: 86 LN--MIKLYGKPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFGVI 138
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXX 294
+ K++ D +TG S+G+GF+ + A+ MNG + NR + V A K T G
Sbjct: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
Query: 295 XXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDS 337
G P+ +A + + S T+F G S
Sbjct: 199 H------------GTPAERVLAASNPTAQKSRPHTLFASGPPS 229
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 310 PSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGK------ 363
P GA G S + + T +VG LD IS+E L + F+Q G VV+V +P +
Sbjct: 7 PGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQ 66
Query: 364 GCGFVQFADRKNAEEAIHALNGTVIGKQTVRLS 396
G GFV+F ++A+ AI LN + + +R++
Sbjct: 67 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99
>IMGA|AC202362_16.3 RNA-binding region RNP-1 (RNA recognition
motif); Calcium-binding EF-hand
chr01_pseudomolecule_IMGAG_V2 218619-221289 E
EGN_Mt071002 20080227
Length = 311
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 10/180 (5%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R +++G+L + + + F G VVS +++ + T +S G+ FV + AE+ ++
Sbjct: 108 RRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIR 167
Query: 174 NFNGTMMPNTDQAFRLNWASFS-AGERRSEAAT------SDLSIFVGDLAIDVTDAMLQE 226
F+GT + +A ++N+ G+R +T S I+ G+L D+T L++
Sbjct: 168 MFDGTTV--GGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 227 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVAT 286
F + + AKVV + N G+S+GYGFV F + A++ MNGV RP+R+ +A
Sbjct: 226 AFAKQ-PGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAV 284
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 27/198 (13%)
Query: 204 ATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENER 263
+T +FVG+L ++ + L + FG ++ +++ D T RS+G+ FV G+ +
Sbjct: 104 STQSRRLFVGNLPFSLSSSQLAQLFGEA-GNVVSVEILYDDITNRSRGFAFVTMGNVEDA 162
Query: 264 TRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDG 323
A+ +G R ++V V + G G+ +G
Sbjct: 163 EEAIRMFDGTTVGGRAIKVNFP----------------EVPIVGKRVQMGSTYRGYV--- 203
Query: 324 DSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAE 377
DS + I+ G L D++ + LR+ F + ++S K+ +G GFV F ++ E
Sbjct: 204 DSPHK-IYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVE 262
Query: 378 EAIHALNGTVIGKQTVRL 395
A+ A+NG + + +RL
Sbjct: 263 VALSAMNGVEVQGRPLRL 280
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIHAL 383
+FVG L +S L Q F + G+VVSV+I +G FV + ++AEEAI
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 384 NGTVIGKQTVRLSWGRSP 401
+GT +G + +++++ P
Sbjct: 170 DGTTVGGRAIKVNFPEVP 187
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
D I+ G+L M Y+ FA ++SAKV+ + G+S GYGFV F + E
Sbjct: 204 DSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEV 263
Query: 171 VLQNFNGT 178
L NG
Sbjct: 264 ALSAMNGV 271
>IMGA|AC174312_11.5 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 11950732-11953538 F
EGN_Mt071002 20080227
Length = 285
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 4/175 (2%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
++ G+L + +D + G +V+ ++ TG+S G+ FV V+QN
Sbjct: 115 LYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNL 174
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 235
+G + R+N++ + ++ +FVG+LA VT L + F ++
Sbjct: 175 DGKEF--MGRTLRVNFSD-KPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAF-QEHGTV 230
Query: 236 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
GA+V+ D TG+S+GYGFV + ++E A+ M+ V R +RV +A K++
Sbjct: 231 VGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQGKRS 285
>IMGA|AC203559_11.4 RNA-binding region RNP-1 (RNA recognition motif)
chr06_pseudomolecule_IMGAG_V2 4176093-4171291 E
EGN_Mt071002 20080227
Length = 240
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 201 SEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDE 260
+E D +F GDL +V D +L + F +RF S A+VV D TG++KGYGF+ F +
Sbjct: 125 AEWPEDDYRLFCGDLGNEVNDDVLSKAF-TRFPSFNMARVVRDKRTGKTKGYGFISFANP 183
Query: 261 NERTRAMTEMNGVFCSNRPMRV 282
+ A+ EMNG + NRP+++
Sbjct: 184 ADLAAALKEMNGKYVGNRPIKL 205
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
D+ R ++ GDL + ++++ + F A+V+R+K+TG+++GYGF+ F + A
Sbjct: 130 DDYR-LFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAA 188
Query: 171 VLQNFNGTMMPNTDQAFR 188
L+ NG + N R
Sbjct: 189 ALKEMNGKYVGNRPIKLR 206
>IMGA|AC202369_17.3 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 17195654-17190859 E
EGN_Mt071002 20080227
Length = 240
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 201 SEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDE 260
+E D +F GDL +V D +L + F +RF S A+VV D TG++KGYGF+ F +
Sbjct: 125 AEWPEDDYRLFCGDLGNEVNDDVLSKAF-TRFPSFNMARVVRDKRTGKTKGYGFISFANP 183
Query: 261 NERTRAMTEMNGVFCSNRPMRV 282
+ A+ EMNG + NRP+++
Sbjct: 184 ADLAAALKEMNGKYVGNRPIKL 205
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
D+ R ++ GDL + ++++ + F A+V+R+K+TG+++GYGF+ F + A
Sbjct: 130 DDYR-LFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAA 188
Query: 171 VLQNFNGTMMPNTDQAFR 188
L+ NG + N R
Sbjct: 189 ALKEMNGKYVGNRPIKLR 206
>IMGA|AC150977_25.5 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 14333004-14330524 F
EGN_Mt071002 20080227
Length = 280
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L +D + F + G+V +VI +K TG+S G+GFV S A E Q
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 176 NGTMM-------------PNTDQAFRLNWASFSAGER-----RSEAATSDLSIFVGDLAI 217
NG ++ P + R G+R R ++ D + VG+LA
Sbjct: 146 NGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAW 205
Query: 218 DVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSN 277
V + L+ FG + + AKV+ D +GRS+G+GFV F +E A+ ++G +
Sbjct: 206 GVDNLALESLFGEQ-GQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNG 264
Query: 278 RPMRVGVA--TPKKTY 291
R +RV A PK+ +
Sbjct: 265 RAIRVSPADSRPKRQF 280
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 14/203 (6%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+FVG+L V A L E F + ++ +V+ D +TGRS+G+GFV E A +
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENA-GDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 270 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 329
+NG R +RV P GG G +G SDGD+
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRF---GGDRPRGP-PRGGSSDGDNR--- 197
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIHAL 383
+ VG L + + L F + G V+ K+ +G GFV F+ + AI L
Sbjct: 198 VHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTL 257
Query: 384 NGTVIGKQTVRLSWGRSPGNKHW 406
+G + + +R+S S + +
Sbjct: 258 DGADLNGRAIRVSPADSRPKRQF 280
>IMGA|AC121232_18.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 12513934-12509664 E
EGN_Mt071002 20080227
Length = 506
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 22/191 (11%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
++ +++G + DE + FA GEV+ A ++R++ TG++ G+GFV F A AE+V
Sbjct: 29 DLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERV 88
Query: 172 LQN---FNG------TMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDA 222
+ + +G +P DQ +N + S + S IFVG L +T++
Sbjct: 89 IIDKHIIDGRTVEAKKAVPRDDQQ-NINRQTGSV--QGSPGPGRTKKIFVGGLPSTITES 145
Query: 223 MLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNR 278
+ F +F +I V+ D NT R +G+GF+ + E R + E+NG +
Sbjct: 146 DFKMYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNG-----K 199
Query: 279 PMRVGVATPKK 289
+ V A PK+
Sbjct: 200 MVEVKRAVPKE 210
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 39/203 (19%)
Query: 201 SEAATSDL-SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGD 259
S+ SDL +F+G ++ D + L+E F + + + A ++ D TGR++G+GFV F D
Sbjct: 23 SDKMESDLGKLFIGGISWDTDEERLKEYFAT-YGEVIEAVIMRDRATGRARGFGFVVFSD 81
Query: 260 ENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGS 319
R + + + R + A P+ + G+V QGS
Sbjct: 82 PAVAERVIIDKH--IIDGRTVEAKKAVPRDDQQNI--------------NRQTGSV-QGS 124
Query: 320 QSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADR 373
G + IFVGGL S I++ D + F QFG + V + +G GF+ +
Sbjct: 125 PGPGRTKK--IFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITY--- 179
Query: 374 KNAEEAI--------HALNGTVI 388
++EEA+ H LNG ++
Sbjct: 180 -DSEEAVDRVLYKTFHELNGKMV 201
>IMGA|CR955006_36.5 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 36065353-36070155 E
EGN_Mt071002 20080227
Length = 479
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 24/188 (12%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ-- 173
+++G + +E + F+ GEV A +++++ TG++ G+GFV F A A+ V+Q
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEK 67
Query: 174 -NFNGTM------MPNTDQAFRLNWASFSAGE-RRSEAATSDLSIFVGDLAIDVTDAMLQ 225
N +G M +P DQ N S ++G S IFVG LA VT++ +
Sbjct: 68 HNIDGRMVEAKKAVPRDDQ----NVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123
Query: 226 ETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMR 281
+ F +F +I V+ D NT R +G+GF+ + E + + E+NG + +
Sbjct: 124 KYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNG-----KMVE 177
Query: 282 VGVATPKK 289
V A PK+
Sbjct: 178 VKRAVPKE 185
>IMGA|AC146743_25.4 U2 auxiliary factor small subunit
chr00_pseudomolecule_IMGAG_V2 2624254-2627959 E
EGN_Mt071002 20080227
Length = 492
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 324 DSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHAL 383
D + T++VGGLD+ ++++DLR F G++ SVK+ + + C FV + R+ AE+A L
Sbjct: 224 DESIKTLYVGGLDARVTEQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEEL 283
Query: 384 -NGTVIGKQTVRLSWGR 399
N VI ++L WGR
Sbjct: 284 SNKLVIKGLRLKLMWGR 300
>IMGA|AC157981_22.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 38680301-38682192 E
EGN_Mt071002 20080227
Length = 476
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 24/174 (13%)
Query: 130 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ---NFNGTM------M 180
+ F+ GEV A +++++ TG++ G+GFV F A A+ V+Q N +G M +
Sbjct: 5 LREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEKHNIDGRMVEAKKAV 64
Query: 181 PNTDQAFRLNWASFSAGE-RRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAK 239
P DQ N S ++G S IFVG LA VT++ ++ F +F +I
Sbjct: 65 PRDDQ----NVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF-DQFGTITDVV 119
Query: 240 VVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMRVGVATPKK 289
V+ D NT R +G+GF+ + E + + E+NG + + V A PK+
Sbjct: 120 VMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNG-----KMVEVKRAVPKE 168
>IMGA|AC137522_14.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 33036485-33042576 F
EGN_Mt071002 20080227
Length = 567
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 97/195 (49%), Gaps = 27/195 (13%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
++F + + T+ + E F S+ ++ ++++D N+ RSKG G++ F D A+
Sbjct: 203 TVFAYQMPLKATERDVYEFF-SKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 261
Query: 269 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 328
++G +P+ V + +K L + S+GA G D
Sbjct: 262 -LSGQLLLGQPVMVKPSEAEKN--------------LVQSNASSGAAVVGPYGAVDRK-- 304
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAIHA 382
++VG L ++++ +LR+ F FG + V++P+ KG GFVQFA ++A +A +
Sbjct: 305 -LYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHA-KAAQS 362
Query: 383 LNGTV-IGKQTVRLS 396
LNG + I +T+++S
Sbjct: 363 LNGKLEIAGRTIKVS 377
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 12/182 (6%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
RT++ + E V+ F+ G+V ++I ++ + +S+G G++EFY + +
Sbjct: 202 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 261
Query: 174 NFNGTMM--------PNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQ 225
+G ++ P+ + + + S D ++VG+L ++T+A L+
Sbjct: 262 -LSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANLR 320
Query: 226 ETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF-CSNRPMRVGV 284
E F F I+ ++ +D TG KG+GFV+F E +A +NG + R ++V
Sbjct: 321 EIFEP-FGQIEVVQLPLDMETGHCKGFGFVQFA-HLEHAKAAQSLNGKLEIAGRTIKVSS 378
Query: 285 AT 286
T
Sbjct: 379 VT 380
>IMGA|AC144431_42.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 6167334-6172171 E
EGN_Mt071002 20080227
Length = 399
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 107/274 (39%), Gaps = 37/274 (13%)
Query: 125 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL--QNFNGTMMPN 182
+D + + GE+ V++ + TG+S G+G+V F S A++VL ++ G M
Sbjct: 15 VDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRM-- 72
Query: 183 TDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVI 242
L + E A IFV + VT+ + F ++ I +
Sbjct: 73 ------LEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHF-EKYGDITDLYMPK 125
Query: 243 DSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT------------ 290
D + +G GF+ FG+ M+E + + S + V ATPK
Sbjct: 126 DQGSKMHRGIGFITFGNAESVENLMSETHELGGSA--VVVDRATPKAREDDVKPTGRMSQ 183
Query: 291 ---YGXXXXXXXXXAVVLAGGHPS---NGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDL 344
YG A G P+ + G + IFVG L + + EDL
Sbjct: 184 GGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDL 243
Query: 345 RQPFLQFGDVVSVKIPVG------KGCGFVQFAD 372
RQ F +FG + V IP +G GFV FAD
Sbjct: 244 RQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFAD 277
>IMGA|AC148526_13.4 RNA-binding region RNP-1 (RNA recognition motif)
chr02_pseudomolecule_IMGAG_V2 6339165-6343189 E
EGN_Mt071002 20080227
Length = 522
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN- 174
+++G + +E+ + F + G+VV A +++++ TG++ G+GFV F + AE+V+
Sbjct: 47 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 106
Query: 175 --FNG------TMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQE 226
+G +P DQ S S G + IFVG LA VT++ +
Sbjct: 107 HVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGS-PAPTPIRTKKIFVGGLASTVTESDFKN 165
Query: 227 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMNGVFCSNRPMRV 282
F +F +I V+ D NT R +G+GF+ + E + + E+NG + + V
Sbjct: 166 YF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNG-----KMVEV 219
Query: 283 GVATPK 288
A PK
Sbjct: 220 KRAVPK 225
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 28/189 (14%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G ++ D + L++ F F + A ++ D TGR++G+GFV F D + R + E
Sbjct: 47 LFIGGISWDTNEDRLRQYF-QNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 105
Query: 270 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 329
+ + R + A P+ + + + GS +
Sbjct: 106 KHVI--DGRTVEAKKAVPRDDQNVFTR---------------SNSSSHGSPAPTPIRTKK 148
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIHA- 382
IFVGGL S +++ D + F QFG + V + +G GF+ + + E+ +H
Sbjct: 149 IFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKT 208
Query: 383 ---LNGTVI 388
LNG ++
Sbjct: 209 FHELNGKMV 217
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAI--- 380
+F+GG+ D +++ LRQ F FGDVV I +G GFV FAD AE +
Sbjct: 47 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 106
Query: 381 HALNG-TVIGKQTV 393
H ++G TV K+ V
Sbjct: 107 HVIDGRTVEAKKAV 120
>IMGA|AC135100_25.5 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis
antigen chr08_pseudomolecule_IMGAG_V2 29868882-29857777
E EGN_Mt071002 20080227
Length = 735
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 89/184 (48%), Gaps = 10/184 (5%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
G +++G + E + F G VV +I++++TGQ +G F+++ + A+
Sbjct: 84 GGNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEAD 143
Query: 170 KVLQNF-NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETF 228
+ ++ N +P ++ +A GER A + +FVG L + ++E F
Sbjct: 144 QAIRALHNRHTLPGGVGPIQVRYAD---GERERLGAV-EYKLFVGSLNKQASVKEVEEVF 199
Query: 229 GSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFC---SNRPMRVGVA 285
S++ I+ ++ D + +S+G GFV++ + A+ +NG++ +P+ V A
Sbjct: 200 -SKYGRIEDVYLMRD-DQKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFA 257
Query: 286 TPKK 289
PK+
Sbjct: 258 DPKR 261
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 308 GHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSV------KIPV 361
G P +G A SDG N +FVG + ++ED+R F + G+VV V K
Sbjct: 69 GFPFSGRGASPDHSDG-GNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQ 127
Query: 362 GKGCGFVQFADRKNAEEAIHALN 384
+GC F+++A + A++AI AL+
Sbjct: 128 HQGCCFIKYATSEEADQAIRALH 150
>IMGA|AC174143_20.4 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis
antigen chr08_pseudomolecule_IMGAG_V2 29672130-29683222
E EGN_Mt071002 20080227
Length = 735
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 89/184 (48%), Gaps = 10/184 (5%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
G +++G + E + F G VV +I++++TGQ +G F+++ + A+
Sbjct: 84 GGNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEAD 143
Query: 170 KVLQNF-NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETF 228
+ ++ N +P ++ +A GER A + +FVG L + ++E F
Sbjct: 144 QAIRALHNRHTLPGGVGPIQVRYAD---GERERLGAV-EYKLFVGSLNKQASVKEVEEVF 199
Query: 229 GSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFC---SNRPMRVGVA 285
S++ I+ ++ D + +S+G GFV++ + A+ +NG++ +P+ V A
Sbjct: 200 -SKYGRIEDVYLMRD-DQKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFA 257
Query: 286 TPKK 289
PK+
Sbjct: 258 DPKR 261
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 308 GHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSV------KIPV 361
G P +G A SDG N +FVG + ++ED+R F + G+VV V K
Sbjct: 69 GFPFSGRGASPDHSDG-GNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQ 127
Query: 362 GKGCGFVQFADRKNAEEAIHALN 384
+GC F+++A + A++AI AL+
Sbjct: 128 HQGCCFIKYATSEEADQAIRALH 150
>IMGA|CU041253_29.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 34554315-34559382 E
EGN_Mt071002 20080227
Length = 407
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 26/195 (13%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
++F + + T+ + E F S+ ++ ++++D N+ RSKG G++ F D A+
Sbjct: 36 TVFAYQMPLKATERDVYEFF-SKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 94
Query: 269 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 328
++G +P+ V + +K VV G + GAV +
Sbjct: 95 -LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVV--GPY---GAV-----------DR 137
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAIHA 382
++VG L ++++ LR+ F FG V V++P+ KG GF+QFA ++A+ A +
Sbjct: 138 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA-QS 196
Query: 383 LNGTV-IGKQTVRLS 396
LNG + I +T+++S
Sbjct: 197 LNGKLEIAGRTIKVS 211
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 82/168 (48%), Gaps = 12/168 (7%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
RT++ + E V+ F+ G+V ++I ++ + +S+G G++EFY + +
Sbjct: 35 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 94
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATS---------DLSIFVGDLAIDVTDAML 224
+G ++ + + A + + + + D ++VG+L ++T++ L
Sbjct: 95 -LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQL 153
Query: 225 QETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
+E F F +++ ++ +D TG KG+GF++F E +A +NG
Sbjct: 154 REIF-EPFGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNG 199
>IMGA|AC157373_30.4 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 1636778-1642537 E
EGN_Mt071002 20080227
Length = 541
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 105/270 (38%), Gaps = 50/270 (18%)
Query: 138 GEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWASFSAG 197
GEVV ++ + K ++ G+ FV + S A K ++ N T F AG
Sbjct: 259 GEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIKELNNT--------------EFKAG 304
Query: 198 ERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVID-SNTGRSKGYGFVR 256
+ + + + +F+G++ + L++ + +++ D N ++GY F+
Sbjct: 305 KIKCSKSQAKSRLFIGNIPRSWGEKDLKKVVSDIGPGVTAVELIKDMKNISNNRGYAFID 364
Query: 257 FGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPS-NGAV 315
+ + C+ R + +P + L P+ N A
Sbjct: 365 YHNNQ-------------CAEY-SRQKMTSP--------------SFKLGDNFPTVNWAE 396
Query: 316 AQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKG------CGFVQ 369
+ + S S ++V L +++ E L++ F G + V +P K GFV
Sbjct: 397 PKNADSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVH 456
Query: 370 FADRKNAEEAIHALNGTVIGKQTVRLSWGR 399
FA+R NA +A+ V+ Q + S +
Sbjct: 457 FAERSNAMKALKNTEKYVLDGQILECSLAK 486
>IMGA|AC202518_12.3 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 16448553-16449568 E
EGN_Mt071002 20080227
Length = 112
Score = 55.1 bits (131), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 206 SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTR 265
S +F+ L+ + + +L++TF + I KV+ + TG SKGYGFVRF E
Sbjct: 31 SSTKLFIAGLSYNTNETVLRDTF-EQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAAT 89
Query: 266 AMTEMNGVFCSNRPMRVGVA 285
A E++G R +RVG A
Sbjct: 90 ARKELHGQIVDGRRIRVGYA 109
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ L + +E + + F G+++ KVI N +TG+S+GYGFV F S A +
Sbjct: 35 LFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKEL 94
Query: 176 NGTMM 180
+G ++
Sbjct: 95 HGQIV 99
>IMGA|AC145470_21.4 SWAP/Surp; RNA-binding region RNP-1 (RNA
recognition motif); DNA-binding SAP; Regulation of
nuclear pre-mRNA protein chr08_pseudomolecule_IMGAG_V2
16866675-16855907 E EGN_Mt071002 20080227
Length = 1031
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 318 GSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI---------PVGKGCGFV 368
GS DGD T ++VG L + + L + F +FG + SVKI + CGFV
Sbjct: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
Query: 369 QFADRKNAEEAIHALNGTVIGKQTVRLSWGRS 400
F +R + + A + G V+ + +++ WG+S
Sbjct: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
>IMGA|AC158464_2.5 RNA-binding region RNP-1 (RNA recognition motif);
RNA recognition motif 2 chr02_pseudomolecule_IMGAG_V2
13462757-13456252 E EGN_Mt071002 20080227
Length = 865
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 314 AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFAD 372
++ + + SD D N T+ V LD +S+EDLRQ F +G+V ++ P + F+++ D
Sbjct: 267 SIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYD 326
Query: 373 RKNAEEAIHALNGTVIGKQTVRLSWGRSPG 402
+ AE A+ +LN + I + ++L R PG
Sbjct: 327 VRAAEAALKSLNRSDIAGKRIKLEPSR-PG 355
>IMGA|CU024864_17.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 25794794-25795821 H
EGN_Mt071002 20080227
Length = 135
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+FVG L+ V + L++ F S F + ++V D ++GR++G+GFV F +E+ A
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSS-FGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 270 MNGVFCSNRPMRVGVATPK 288
M+G RP+R+ A K
Sbjct: 97 MDGKALLGRPLRINFALEK 115
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGK------GCGFVQFADRKNAEEAIHAL 383
+FVGGL + ++ L+ F FGDV V+I K G GFV F++ A+ A A+
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 384 NGTVIGKQTVRLSWG 398
+G + + +R+++
Sbjct: 98 DGKALLGRPLRINFA 112
>IMGA|AC134242_14.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 19485092-19483974 E
EGN_Mt071002 20080227
Length = 190
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 211 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 270
FVG LA L++ F S+F I +KV+ D TGRS+G+GFV F +E A+ EM
Sbjct: 11 FVGGLAWATDSQALEQAF-SKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEM 69
Query: 271 NGVFCSNRPMRVGVA 285
NG R + V A
Sbjct: 70 NGQDIDGRNITVNEA 84
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 117 WLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFN 176
++G L D + F+ GE+ +KVI +++TG+S G+GFV F + ++ N
Sbjct: 11 FVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEMN 70
Query: 177 G 177
G
Sbjct: 71 G 71
>IMGA|AC146705_26.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 23207650-23209533 F
EGN_Mt071002 20080227
Length = 146
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G L+ +V D L++ F + + + A+V+ D TGRS+G+GFV F E T A++
Sbjct: 38 LFIGGLSYNVDDQSLRDAFTT-YGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS- 95
Query: 270 MNGVFCSNRPMRVGVATPKK 289
M+G + R +RV A ++
Sbjct: 96 MDGQDLNGRNIRVSYANDRQ 115
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL--- 172
+++G L + +D+ + + F G+VV A+VI +++TG+S G+GFV F S +A L
Sbjct: 38 LFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSMD 97
Query: 173 -QNFNG 177
Q+ NG
Sbjct: 98 GQDLNG 103
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 326 NNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEA 379
+++ +F+GGL ++ D+ LR F +GDVV ++ +G GFV F ++A A
Sbjct: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
Query: 380 IHALNGTVIGKQTVRLSWG 398
+ +++G + + +R+S+
Sbjct: 94 L-SMDGQDLNGRNIRVSYA 111
>IMGA|CU459035_17.3 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 21553444-21558849 F
EGN_Mt071002 20080227
Length = 283
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 205 TSDLSIFVGDLAIDV-TDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENER 263
T+ +FVG LA + TD M T+ +F I A ++ D NTG+SKGYGFV F D
Sbjct: 13 TTFTKVFVGGLAWETPTDEM--RTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESA 70
Query: 264 TRAMTEMNGV 273
RA + N V
Sbjct: 71 RRACADPNPV 80
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 323 GDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNA 376
GD+ T +FVGGL + +++R F QFGD++ I KG GFV F D ++A
Sbjct: 11 GDTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESA 70
Query: 377 EEAIHALNGTVIGKQ 391
A N + G++
Sbjct: 71 RRACADPNPVIDGRR 85
>IMGA|AC119413_25.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 11723269-11717829 E
EGN_Mt071002 20080227
Length = 324
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 7/163 (4%)
Query: 130 VHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRL 189
+ + F G V+ ++I++K G+ +GY FV S A+ + FN T + + + R+
Sbjct: 112 IKDLFGQCGTVIDVEIIKSKD-GKGKGYTFVTMDSGEGAQAAVDKFNATEI--SGRILRV 168
Query: 190 NWAS----FSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSN 245
+A + I+ +LA L++ F F + A+VV
Sbjct: 169 EFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTENFKTPVSARVVFQVP 228
Query: 246 TGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
G+S GYGFV + E E A++ + G RP+ V ++ K
Sbjct: 229 GGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKISERK 271
>IMGA|CT030180_20.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 22195567-22197506 E
EGN_Mt071002 20080227
Length = 352
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++G L F GE+ + +++++ TG+ G+GF+ + + ++V+Q
Sbjct: 20 IFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE- 78
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 235
N + D+ + + ++ T IFVG + V++ L+ F S+ ++
Sbjct: 79 NHII---NDKQVEIKRTIPKGASQTNDFKTK--KIFVGGIPATVSEDELK-IFFSKHGNV 132
Query: 236 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
+++ D T RS+G+GFV F + + + N + + + + A PKK
Sbjct: 133 VEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAEPKK 186
>IMGA|AC131026_44.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 32295786-32291333 E
EGN_Mt071002 20080227
Length = 281
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ +FVG LA + ++ F +F I A V+ D NTGRSKGYGFV F D
Sbjct: 26 TTYTKVFVGGLAWETQSETMRRYF-EQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 84
Query: 265 RAMTEMNGVFCSNR 278
RA + + V R
Sbjct: 85 RACADPSPVIDGRR 98
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 323 GDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNA 376
GD+ T +FVGGL + E +R+ F QFGD++ + KG GFV F D + A
Sbjct: 24 GDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 83
Query: 377 EEA 379
A
Sbjct: 84 RRA 86
>IMGA|AC174277_12.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 39131449-39132842 F
EGN_Mt071002 20080227
Length = 292
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
S+ V +L+ D + L E F F ++ V ID TG S+G+GFV F + RA+
Sbjct: 212 SVRVTNLSEDTREPDLLELFRP-FGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAIN 270
Query: 269 EMNGVFCSNRPMRVGVATPKKT 290
++NG N +RV ATP+ T
Sbjct: 271 KLNGYGYDNLILRVEWATPRTT 292
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 318 GSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFA 371
GS ++ ++ V L D + DL + F FG V V + + +G GFV F
Sbjct: 201 GSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFV 260
Query: 372 DRKNAEEAIHALNGTVIGKQTVRLSWG 398
R++A+ AI+ LNG +R+ W
Sbjct: 261 SREDAQRAINKLNGYGYDNLILRVEWA 287
>IMGA|CT963115_17.5 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 18117613-18120511 F
EGN_Mt071002 20080227
Length = 170
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
+++VG LA +V +++L F F IK K +D T + + +GFV F + + + AM
Sbjct: 11 TLYVGGLAEEVNESILHAAFIP-FGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMD 69
Query: 269 EMNGVFCSNRPMRVGVATPKKTYG 292
M+G R + V A P+K G
Sbjct: 70 NMDGAELYGRVLTVNYALPEKIKG 93
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 12/81 (14%)
Query: 314 AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGC------GF 367
A+ QG Q + T++VGGL ++++ L F+ FGD+ VK P+ + GF
Sbjct: 2 AMMQGVQKN------TLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGF 55
Query: 368 VQFADRKNAEEAIHALNGTVI 388
V F +R++A A+ ++G +
Sbjct: 56 VTFLEREDASAAMDNMDGAEL 76
>IMGA|AC122162_7.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 2878943-2880084 F
EGN_Mt071002 20080227
Length = 134
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
IFV LA T+ L E F S++ ++ A +V++ R KG+G+V F +E E +A
Sbjct: 34 IFVKGLAFSTTEEKLAEAF-SQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIG 92
Query: 270 MNGVFCSNRPMRVGVATPKK 289
MNG R + V + P +
Sbjct: 93 MNGKILHGRVLYVDMDPPNE 112
Score = 41.2 bits (95), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAIH 381
+ IFV GL ++E L + F Q+G+VV I + KG G+V FA+ + A +A
Sbjct: 32 SKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQI 91
Query: 382 ALNGTVI 388
+NG ++
Sbjct: 92 GMNGKIL 98
>IMGA|AC146760_9.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 22846699-22850069 E
EGN_Mt071002 20080227
Length = 248
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIH 381
T++ V L D EDLR+PF FG + + +P +G GF+QF D +A +A +
Sbjct: 41 TSLLVRNLRHDCRPEDLRRPFGHFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAKY 100
Query: 382 ALNGTVI 388
++G V+
Sbjct: 101 HMDGQVL 107
>IMGA|AC149546_31.4 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 17368014-17360795 E
EGN_Mt071002 20080227
Length = 971
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 6/65 (9%)
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKI------PVGKGCGFVQFADRKNAEEAIHAL 383
IFVGGLD D ++EDL++ F + G+V+ V++ +G V+FA++++A++A+ +
Sbjct: 392 IFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEM 451
Query: 384 NGTVI 388
VI
Sbjct: 452 KNPVI 456
>IMGA|AC134242_17.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 19467865-19466799 F
EGN_Mt071002 20080227
Length = 164
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 203 AATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENE 262
+A + FVG LA L++ F S++ I +K++ D TGRS+G+GFV F DE
Sbjct: 3 SADVEYRCFVGGLAWATDSEALEKAF-SQYGEIIDSKIINDRETGRSRGFGFVTFADEKS 61
Query: 263 RTRAMTEMNGVFCSNRPMRVGVA 285
A+ MNG R + V A
Sbjct: 62 MRDAIEGMNGQDMDGRNITVNEA 84
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 117 WLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFN 176
++G L D + F+ GE++ +K+I +++TG+S G+GFV F + ++ N
Sbjct: 11 FVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMN 70
Query: 177 GTMM 180
G M
Sbjct: 71 GQDM 74
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 331 FVGGLDSDISDEDLRQPFLQFGDVVSVKIP------VGKGCGFVQFADRKNAEEAIHALN 384
FVGGL E L + F Q+G+++ KI +G GFV FAD K+ +AI +N
Sbjct: 11 FVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMN 70
Query: 385 G 385
G
Sbjct: 71 G 71
>IMGA|AC146333_33.4 RNA-binding region RNP-1 (RNA recognition
motif); RNA recognition motif 2
chr07_pseudomolecule_IMGAG_V2 13411132-13415846 E
EGN_Mt071002 20080227
Length = 809
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 312 NGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSV-KIPVGKGCGFVQF 370
N ++A G S G+ + T+FV +DSD+ D L+ F QFGD+ + + +G + +
Sbjct: 183 NSSIA-GENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQGSAMISY 241
Query: 371 ADRKNAEEAIHALNGTVIGKQTVRLSW 397
D + A+ A+ ALN + G++ + +
Sbjct: 242 YDIRAAQNAMRALNNRLFGRKKFDIHY 268
>IMGA|AC134242_43.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 19512181-19511124 F
EGN_Mt071002 20080227
Length = 161
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 204 ATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENER 263
A + FVG LA + L++ F S++ I +K++ D TGRS+G+GFV F +E
Sbjct: 2 ADVEYRCFVGGLAWATDNEALEKAF-SQYGEIVDSKIINDRETGRSRGFGFVTFANEKSM 60
Query: 264 TRAMTEMNGVFCSNRPMRVGVA 285
A+ MNG R + V A
Sbjct: 61 NDAIEAMNGQDLDGRNITVNQA 82
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 117 WLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFN 176
++G L D + F+ GE+V +K+I +++TG+S G+GFV F + + ++ N
Sbjct: 9 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 68
Query: 177 G 177
G
Sbjct: 69 G 69
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 331 FVGGLDSDISDEDLRQPFLQFGDVVSVKIP------VGKGCGFVQFADRKNAEEAIHALN 384
FVGGL +E L + F Q+G++V KI +G GFV FA+ K+ +AI A+N
Sbjct: 9 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 68
Query: 385 G 385
G
Sbjct: 69 G 69
>IMGA|AC202373_19.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 35361221-35355148 E
EGN_Mt071002 20080227
Length = 595
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 25/176 (14%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
+T+++G+L + + + F GEVV + +++ G+ +G+G VEF S A+ L+
Sbjct: 340 KTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE-GRFKGFGHVEFASAEAAQSALE 398
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGER-------------RSEAATSDLSIFVGDLAIDVT 220
NG + +A RL+ A ER R ++ T + F +L D
Sbjct: 399 -MNGQEL--LQRAVRLDLAR----ERGAFTLIIIAQSGGRGQSQTVFVRGFDKNLGEDEI 451
Query: 221 DAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMNG 272
A L E FG + D +G SKG+ ++ F D + ++A+ +E++G
Sbjct: 452 RAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALELHESELDG 507
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 50/201 (24%)
Query: 209 SIFVGDLAIDVTDAMLQETFGS-------RFSSIKGAKVVIDSNTGRSKGYGFVRFGDEN 261
++FVG+L+ V + +++ F RFSS GR KG+G V F
Sbjct: 341 TLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSS---------DEEGRFKGFGHVEFAS-A 390
Query: 262 ERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQS 321
E ++ EMNG R +R+ +A + + +++A QS
Sbjct: 391 EAAQSALEMNGQELLQRAVRLDLARERGAF---------TLIIIA-------------QS 428
Query: 322 DGDSNNTTIFVGGLDSDISDEDLRQPFLQF-----GDVVSVKIP------VGKGCGFVQF 370
G + T+FV G D ++ ++++R ++ G+ V IP KG ++ F
Sbjct: 429 GGRGQSQTVFVRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDF 488
Query: 371 ADRKNAEEAIHALNGTVIGKQ 391
D + +A+ + G Q
Sbjct: 489 KDSDSFSKALELHESELDGYQ 509
>IMGA|AC140027_27.5 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 23874434-23871286 F
EGN_Mt071002 20080227
Length = 284
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 196 AGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFV 255
+ E EA+ +FV L+ ++ L+ F F + KV+ID + RSKGY F+
Sbjct: 180 SSEASQEASVKTKKLFVTGLSFYTSEKTLRAAFEG-FGELVEVKVIIDKISKRSKGYAFI 238
Query: 256 RFGDENERTRAMTEMNGVFCSNRPMRVGVA--TPKK 289
+ E + A+ EMNG + + V VA TP +
Sbjct: 239 EYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPPR 274
>IMGA|CR962128_15.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 28226391-28230385 H
EGN_Mt071002 20080227
Length = 289
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 324 DSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAE 377
+SNN ++ V + D E+LR PF +FG V V IP +G FVQF D A
Sbjct: 43 ESNNGSLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYEAS 102
Query: 378 EAIHALNGTVIGKQTV 393
EA + ++ + + +
Sbjct: 103 EAQYHMDRQIFAGREI 118
>IMGA|CT009540_36.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 33868874-33866998 H
EGN_Mt071002 20080227
Length = 251
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ IFVG LA + L+ F +F I A V+ D TG+SKGYGFV F D N
Sbjct: 23 TTYTKIFVGGLAWETKRDTLKRYF-DQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
Query: 265 RAMTEMNGVFCSNR 278
A N + R
Sbjct: 82 LACQNPNPMIDGRR 95
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 323 GDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNA 376
GD+ T IFVGGL + + L++ F QFGD++ + KG GFV F D +A
Sbjct: 21 GDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSA 80
Query: 377 EEAIHALNGTVIGKQ 391
A N + G++
Sbjct: 81 ILACQNPNPMIDGRR 95
>IMGA|AC145289_29.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 13200806-13192265 E
EGN_Mt071002 20080227
Length = 272
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ +FVG LA + +++ F +F I A V+ D TGRSKGYGFV F + +
Sbjct: 13 TTYTKVFVGGLAWETQKETMKKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPDAAM 71
Query: 265 RAMTE 269
RA +
Sbjct: 72 RACVD 76
>IMGA|AC202473_6.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 35298638-35303744 E
EGN_Mt071002 20080227
Length = 623
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 31/182 (17%)
Query: 114 RTIWLGDLHHW------MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRAT 167
R WL D+ W E + +C GEVV + +++ G+ +G+G VEF S
Sbjct: 362 REQWLKDIICWEPVLQCATEKFFQDC----GEVVDVRFSSDEE-GRFKGFGHVEFASAEA 416
Query: 168 AEKVLQNFNGTMMPNTDQAFRLNWA----SFSAGERRSEAATS-----DLSIFV----GD 214
A+ L+ NG + +A RL+ A +F+ + +A S ++FV +
Sbjct: 417 AQSALE-MNGQEL--LQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKN 473
Query: 215 LAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEM 270
L D A L E FG + D +G SKG+ ++ F D + ++A+ +E+
Sbjct: 474 LGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALELHESEL 533
Query: 271 NG 272
+G
Sbjct: 534 DG 535
>IMGA|AC146704_27.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 6163159-6161440 F
EGN_Mt071002 20080227
Length = 128
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
D +++G+L + + + F+ G +SAKV R T +S G+GFV F S E
Sbjct: 49 DSPYKVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEA 108
Query: 171 VLQNFNGTMMPNTDQAFRLNWA 192
+ +FN ++ Q R+N A
Sbjct: 109 AISSFNNALLEG--QKIRVNKA 128
>IMGA|AC129091_32.5 RNA-binding region RNP-1 (RNA recognition motif)
chr02_pseudomolecule_IMGAG_V2 4002353-3997865 E
EGN_Mt071002 20080227
Length = 325
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 82/207 (39%), Gaps = 24/207 (11%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
IFVG L T+ ++E + F ++ +V D TG SKGYGF + D A
Sbjct: 103 IFVGGLPYYFTEVQMRELLQA-FGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAA 161
Query: 270 MNGVFCSNRPMRVGVAT------PKK--TYGXXXXXXXXXAVVL------AGGHPSNGAV 315
+NG+ ++ + V AT P++ + + L G P+N
Sbjct: 162 LNGLKMGDKTLTVRRATVSAHSKPEEDNIFARAQQHIAMQKIALEVVGLNIPGVPTNDES 221
Query: 316 AQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP---------VGKGCG 366
++ T + + ED+R +FG +V+V IP G G
Sbjct: 222 PTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLVNVVIPRPNPNGELSTGIGKV 281
Query: 367 FVQFADRKNAEEAIHALNGTVIGKQTV 393
F++++D A +ALNG G V
Sbjct: 282 FLEYSDCTACLAAKNALNGRKFGGSIV 308
>IMGA|AC125368_8.5 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 26182639-26180185 F
EGN_Mt071002 20080227
Length = 141
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 200 RSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGD 259
R + + +F+ L+ TD L E F S F + AKV+ D +GRSKG+ FV +
Sbjct: 27 RLNSTLTSPKLFISGLSRLTTDEKLTEAF-SPFGQLLEAKVITDRGSGRSKGFAFVSYST 85
Query: 260 ENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
E +A MN F + V A P++
Sbjct: 86 IEEAEKAREGMNAKFLDGWVIFVDPAKPRE 115
>IMGA|AC160838_3.5 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 25378792-25373634 E
EGN_Mt071002 20080227
Length = 555
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 325 SNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI-----PVGKGCGFVQFADRKNAEEA 379
++++I+VGGL +DE +R F +G ++ VKI +GK FV F + ++A +A
Sbjct: 4 DDDSSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRTIGKCYCFVTFTNPRSAIDA 63
Query: 380 IHALNGTVIGKQTVRLSWGRSPG 402
I+ +NG I + V+++ +S G
Sbjct: 64 INDMNGRTINGRVVKVNGVKSRG 86
>IMGA|AC144541_44.4 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 31412933-31415211 E
EGN_Mt071002 20080227
Length = 252
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 326 NNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI---PVGKGCGFVQFADRKNAEEAIHA 382
++ TI+VG L DI ++ F +FG +V +++ P G FV+F D ++AE+AI
Sbjct: 5 SSRTIYVGNLPGDIRLREVEDLFYKFGPIVDIELKIPPRPPGYAFVEFEDARDAEDAIRY 64
Query: 383 LNG 385
+G
Sbjct: 65 RDG 67
>IMGA|CR936368_46.5 RNA-binding region RNP-1 (RNA recognition
motif); Zinc finger, CCHC-type
chr03_pseudomolecule_IMGAG_V2 30837735-30840711 E
EGN_Mt071002 20080227
Length = 199
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP-VGKGCGFVQFADRKNAEEAIHALNG 385
T +++G LDS IS+ DL F FG + SV + G F+ F DR++A +AI L+G
Sbjct: 2 TRVYIGNLDSRISERDLEDDFHVFGVIRSVWVARRPPGYAFIDFDDRRDALDAIRELDG 60
>IMGA|CU062643_11.3 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 28273303-28271287 H
EGN_Mt071002 20080227
Length = 290
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 130 VHNCFAHTGEVVSAKV-IRNKQTGQSEGYGFVEFYSRATAEKVLQN-----FNGTMMPNT 183
V + F G+V+ ++ + NK ++ G FVE S A + L + F+G ++ N
Sbjct: 105 VRSLFEKYGKVLHVELSMYNK--NRNRGLAFVEMGSPEEASEALNSLQSYEFDGRII-NI 161
Query: 184 DQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVID 243
A ER+ ++FV + + ++E F S + A+V+
Sbjct: 162 QYAKPKKEKIPPPVERKP----ITYNLFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFH 217
Query: 244 SNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
N R GYGFV + + E A+ E G RP+RV
Sbjct: 218 ENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPLRVA 257
>IMGA|AC187356_26.4 RNA-binding region RNP-1 (RNA recognition
motif); Zinc finger, CCHC-type - 5prime partial
chr02_pseudomolecule_IMGAG_V2 1366063-1367727 E
EGN_Mt071002 20080227
Length = 238
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 238 AKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
AKVV+D +GRS+G+GFV F D+ A+ MNG+ R + V A P+
Sbjct: 5 AKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQ 55
>IMGA|AC150443_40.5 RNA-binding region RNP-1 (RNA recognition
motif); Calcium-binding EF-hand
chr07_pseudomolecule_IMGAG_V2 32027929-32025407 E
EGN_Mt071002 20080227
Length = 284
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/143 (18%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L ++ V G++V K+I++++TG+S+GY FV + ++ A+K + +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 235
+ F R + + +F+G++ T+ ++ +
Sbjct: 166 HNK--------------EFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGV 211
Query: 236 KGAKVVID-SNTGRSKGYGFVRF 257
+ ++ D N R++G+ FV +
Sbjct: 212 ESIDLIKDPQNQSRNRGFAFVLY 234
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIH 381
+ +F+GGL D SD+D+R+ GD+V +K+ KG FV + ++ A++AI
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 382 ALNGTVIGKQTVR 394
++ +T+R
Sbjct: 164 DIHNKEFKGKTLR 176
>IMGA|AC144431_18.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 6101068-6101715 E
EGN_Mt071002 20080227
Length = 176
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 321 SDGDSNNTTIFVGG-LDSDISDEDLRQPFLQFGDVVSVKIPVGKGCG------FVQFADR 373
SD + N+ + VGG L + + DL Q F FG V+ I + + G FV FA +
Sbjct: 87 SDDKNKNSFLVVGGNLPPETRNHDLLQLFQPFGHVIGADIAIAQHTGLSGRFAFVNFATK 146
Query: 374 KNAEEAIHALNGTVIGKQTVRLSW 397
+ A+ AI LNG +R+ W
Sbjct: 147 EAAQSAIERLNGIDYHNFILRVEW 170
>IMGA|AC146743_17.4 RNA-binding region RNP-1 (RNA recognition motif)
chr00_pseudomolecule_IMGAG_V2 2592477-2591536 H
EGN_Mt071002 20080227
Length = 180
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 41/71 (57%)
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIG 389
++VG L +I +++L PF++FG + V G+ F+ F ++A +A+ +L G ++
Sbjct: 45 LWVGNLSHNIVEDELAHPFIRFGPLEKVAFQPGRSYAFINFEVDEDAIDAMRSLQGFLLA 104
Query: 390 KQTVRLSWGRS 400
+R+ + ++
Sbjct: 105 GNPLRIEFAKA 115
>IMGA|AC141435_12.5 RNA-binding region RNP-1 (RNA recognition
motif); RNA recognition motif 2
chr03_pseudomolecule_IMGAG_V2 24665094-24667450 H
EGN_Mt071002 20080227
Length = 524
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 326 NNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGK-GCGFVQFADRKNAEEAIHAL 383
N T+ V LD D+S + L+Q F FG + V+ P K FV+F D ++AE+A+ L
Sbjct: 150 NQGTLVVFNLDDDVSSDQLQQVFGAFGAIKEVRDTPWKKRNQSFVEFFDIRDAEKALKEL 209
Query: 384 NGTVIGKQTVRLSWGRSPGNKHWRSDSN 411
NG I + + + + + K + S+ N
Sbjct: 210 NGKEINGKPIAIEFSKP---KLFHSEPN 234
>IMGA|AC149134_50.5 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 23568765-23563374 E
EGN_Mt071002 20080227
Length = 486
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 206 SDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTR 265
S IFV L D T A L F S++ I+ K V D +G+SKGYGF+ F +
Sbjct: 125 SHRKIFVHGLGWDTTSATLINAF-SQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARN 183
Query: 266 AMTE 269
A+ E
Sbjct: 184 ALKE 187
>IMGA|CT033766_5.5 U2 auxiliary factor small subunit
chr05_pseudomolecule_IMGAG_V2 23709374-23707315 E
EGN_Mt071002 20080227
Length = 161
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGCG------FVQFADRKNAEEAIHAL 383
+FVGG+ D ++ D+ F Q+G+VV + + KG G F+ + D+++ A+ L
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 384 NGTVIGKQTVRL 395
NG + + +R+
Sbjct: 98 NGAQVSGRIIRV 109
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+FVG + D T+ + F +++ + +V D TG+SKG+ F+ + D+ A+
Sbjct: 38 VFVGGIPFDFTEGDVIAVF-AQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDN 96
Query: 270 MNGVFCSNRPMRV 282
+NG S R +RV
Sbjct: 97 LNGAQVSGRIIRV 109
>IMGA|AC139707_45.4 RNA-binding region RNP-1 (RNA recognition
motif); von Willebrand factor, type A
chr02_pseudomolecule_IMGAG_V2 27085036-27087059 H
EGN_Mt071002 20080227
Length = 98
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+FV L+ T L+ F S F + A ++ D NT R KG+GFV + E E +A
Sbjct: 9 LFVSRLSFYTTQQQLESLF-SPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKA 67
Query: 270 MNGVF 274
+NG +
Sbjct: 68 LNGRY 72
>IMGA|AC139854_19.4 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 28119974-28114016 F
EGN_Mt071002 20080227
Length = 477
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 75/154 (48%), Gaps = 12/154 (7%)
Query: 140 VVSAKVIRNKQTG-QSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWASFSAGE 198
V+S +++++ Q+ ++ G+ F+E+++ A AE ++ M N++ N A S +
Sbjct: 205 VISVELLKDPQSSSRNRGFAFIEYHNHACAE-----YSRQKMSNSNFKLDNNDAIVSWAD 259
Query: 199 RRSEAATSDL---SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKG-YGF 254
R+ ++S +++V +L ++T L+E F K A + + G+ K YGF
Sbjct: 260 PRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVA--LPPAKAGQEKSRYGF 317
Query: 255 VRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
V F D + +A+ + + + +A P+
Sbjct: 318 VHFADRSSAMKALKNTEKYEINGQTLECSLAKPQ 351