Miyakogusa Predicted Gene
- chr4.CM0042.1300.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.CM0042.1300.nc + phase: 0
(319 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC140035_34.4 Ubiquitin fusion degradation protein UFD1 chr... 492 e-139
IMGA|AC174290_15.4 Ubiquitin fusion degradation protein UFD1 chr... 317 5e-87
IMGA|AC174290_6.4 Ubiquitin fusion degradation protein UFD1 chr0... 310 6e-85
IMGA|AC174290_27.4 Ubiquitin fusion degradation protein UFD1 chr... 290 6e-79
IMGA|CR931732_26.4 Ubiquitin fusion degradation protein UFD1; Zi... 115 2e-26
>IMGA|AC140035_34.4 Ubiquitin fusion degradation protein UFD1
chr04_pseudomolecule_IMGAG_V2 38030687-38035543 F
EGN_Mt071002 20080227
Length = 320
Score = 492 bits (1266), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/320 (75%), Positives = 251/320 (78%), Gaps = 1/320 (0%)
Query: 1 MFFDGYGYHGTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMLFELR 60
MFFDGYGYHGTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMLFELR
Sbjct: 1 MFFDGYGYHGTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMLFELR 60
Query: 61 NDDAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDIVRVKNVTLPKGKYVKLQPHTK 120
N AERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGD+VRVKNVTLPKG YVKLQPHTK
Sbjct: 61 NAAAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDVVRVKNVTLPKGTYVKLQPHTK 120
Query: 121 DFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPANAISIIETDCEVD 180
DFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDI+E+KPANAISIIETDCEVD
Sbjct: 121 DFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIVESKPANAISIIETDCEVD 180
Query: 181 FAPPLDYKEPEKPTXXXXXXXXXXXXXXXXXXXXXKFNPFTGAGRRLDGKPLKYEPPPVS 240
FAPPLDYKEPE+P KFNPFTG+GRRLDGKPL Y+PPPVS
Sbjct: 181 FAPPLDYKEPERPVAPRSAGKAPEADKEAPAETEPKFNPFTGSGRRLDGKPLNYQPPPVS 240
Query: 241 SSGTKDKKPDVPSVXXXXXXXXXXXXXXXXXXGKLVFGSNPARTKDTGXXXXXXXXXX-X 299
SSG+KDK P +V GKLVFGSNP R K+TG
Sbjct: 241 SSGSKDKNPAAQNVNSQPSTASSSQSNAPQTQGKLVFGSNPNRGKETGKATEAKAKQEPP 300
Query: 300 XXXXXXXFQPFSGKKYSLRG 319
FQPF+GKKYSLRG
Sbjct: 301 KEKEEDKFQPFTGKKYSLRG 320
>IMGA|AC174290_15.4 Ubiquitin fusion degradation protein UFD1
chr04_pseudomolecule_IMGAG_V2 16819129-16823304 E
EGN_Mt071002 20080227
Length = 386
Score = 317 bits (811), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 165/315 (52%), Positives = 200/315 (63%), Gaps = 15/315 (4%)
Query: 7 GYHGTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMLFELRNDDAER 66
G H FE Y C+P S +++P LE+GDKIIMP SALDRLA L+I+YPMLFELRN AER
Sbjct: 84 GLHNEIFEHVYSCFPVSSLKRPTLENGDKIIMPSSALDRLARLNIEYPMLFELRNTSAER 143
Query: 67 VSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDIVRVKNVTLPKGKYVKLQPHTKDFLDIS 126
+HCGVLEF A+EG++++P WMME++LLQEG+IV +K+ +L KGK VKLQPH+KDFL+IS
Sbjct: 144 TTHCGVLEFTADEGIVFLPNWMMEDLLLQEGNIVSLKSTSLVKGKCVKLQPHSKDFLEIS 203
Query: 127 NPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPANAISIIETDCEVDFAPPLD 186
+PKA+LET+LR++SCLTTG +IM+ YNNKKYYIDI+ETKP+ AISIIETDCEVDFAPPLD
Sbjct: 204 DPKAMLETSLRSYSCLTTGRTIMIPYNNKKYYIDIVETKPSPAISIIETDCEVDFAPPLD 263
Query: 187 YKEPEKPTXXXXXXXXXXXXXXXXXXXXXKFNPFTGAGRRLDGKPLKYEPPPVSSSGTKD 246
YKEPEKP + PF+G GRRLDGKP S+ K
Sbjct: 264 YKEPEKPLPSDLSHKESPQVEEEPAAKVPRLMPFSGIGRRLDGKPSTQLVEQASTPVPKK 323
Query: 247 KKPDVPSVXXXXXXXXXXXXXXXXXXGKLVFGSN---PARTKDTGXXXXXXXXXXXXXXX 303
+ D S G LVFGS P
Sbjct: 324 QHTDNNSN------------NSNRTSGNLVFGSKANAPKVQTQPKAFLNSASQESSKKTD 371
Query: 304 XXXFQPFSGKKYSLR 318
FQ F+GKKYSLR
Sbjct: 372 TPQFQAFTGKKYSLR 386
>IMGA|AC174290_6.4 Ubiquitin fusion degradation protein UFD1
chr04_pseudomolecule_IMGAG_V2 16813956-16816640 H
EGN_Mt071002 20080227
Length = 419
Score = 310 bits (793), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 160/310 (51%), Positives = 197/310 (63%), Gaps = 15/310 (4%)
Query: 12 SFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMLFELRNDDAERVSHCG 71
+FEQ Y C P S +++P LE+GDKIIMP SALD LA L+I+YPMLFELRN AER +HCG
Sbjct: 122 TFEQFYSCLPISSLKRPTLENGDKIIMPSSALDSLARLNIEYPMLFELRNTSAERTTHCG 181
Query: 72 VLEFIAEEGMIYMPYWMMENMLLQEGDIVRVKNVTLPKGKYVKLQPHTKDFLDISNPKAI 131
VLEF A+EG++++P WMME++ LQEG+IV +K+ +L KGK+VKLQPH+KDFL+IS+PKA+
Sbjct: 182 VLEFTADEGIVFLPNWMMEDLFLQEGNIVSLKSTSLVKGKFVKLQPHSKDFLEISDPKAM 241
Query: 132 LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPANAISIIETDCEVDFAPPLDYKEPE 191
LET+LR++SCLTTG +IM+ YN KKYYID++ETKP+ AISIIETDCEVDFAPPLDYKEPE
Sbjct: 242 LETSLRSYSCLTTGRTIMIPYNKKKYYIDVVETKPSPAISIIETDCEVDFAPPLDYKEPE 301
Query: 192 KPTXXXXXXXXXXXXXXXXXXXXXKFNPFTGAGRRLDGKPLKYEPPPVSSSGTKDKKPDV 251
KP + PF+G GRRLDGKP S+ + V
Sbjct: 302 KPLPSDLSHKKPLQVEEERAAKAPRLMPFSGIGRRLDGKP--------STQSVEQASTPV 353
Query: 252 PSVXXXXXXXXXXXXXXXXXXGKLVFGSN---PARTKDTGXXXXXXXXXXXXXXXXXXFQ 308
P GKLVFGS P FQ
Sbjct: 354 PK----KQHTENNSNNSNRTSGKLVFGSKANAPKVQTQPKAFLNSASQESSKKTDTPQFQ 409
Query: 309 PFSGKKYSLR 318
F+GKKYSLR
Sbjct: 410 AFTGKKYSLR 419
>IMGA|AC174290_27.4 Ubiquitin fusion degradation protein UFD1
chr04_pseudomolecule_IMGAG_V2 16797797-16799711 H
EGN_Mt071002 20080227
Length = 272
Score = 290 bits (742), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 149/284 (52%), Positives = 180/284 (63%), Gaps = 15/284 (5%)
Query: 38 MPPSALDRLASLHIDYPMLFELRNDDAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEG 97
MP SALDRLA L+I+YPMLFELRN AER +HCGVLEF A+EG++++P WMME+MLLQEG
Sbjct: 1 MPSSALDRLARLNIEYPMLFELRNTSAERTTHCGVLEFTADEGIVFLPNWMMEDMLLQEG 60
Query: 98 DIVRVKNVTLPKGKYVKLQPHTKDFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKY 157
D+V +K+ +L KGK+VK QPH+KDFLDISNPKA+LET+LR++SCLTTG +IM+ YNNKKY
Sbjct: 61 DLVSLKSTSLEKGKFVKFQPHSKDFLDISNPKAMLETSLRSYSCLTTGRTIMIPYNNKKY 120
Query: 158 YIDIIETKPANAISIIETDCEVDFAPPLDYKEPEKPTXXXXXXXXXXXXXXXXXXXXXKF 217
YID++ETKP+ AISIIE DCEVDFAPPLDYKEPEKP K
Sbjct: 121 YIDVVETKPSPAISIIEIDCEVDFAPPLDYKEPEKPLPSDLSHKKHRQVEEEPPTKVPKL 180
Query: 218 NPFTGAGRRLDGKPLKYEPPPVSSSGTKDKKPDVPSVXXXXXXXXXXXXXXXXXXGKLVF 277
PF+G+GRRLDGKP S+ K ++ + GKLVF
Sbjct: 181 IPFSGSGRRLDGKPSAQSIEQTSTPIIKQQQTE------------NKTNSSIRTPGKLVF 228
Query: 278 GSNPARTK---DTGXXXXXXXXXXXXXXXXXXFQPFSGKKYSLR 318
GSN + FQ F GKKYSLR
Sbjct: 229 GSNANASNVQTQPKASLKSASQESSKKTDTPQFQAFLGKKYSLR 272
>IMGA|CR931732_26.4 Ubiquitin fusion degradation protein UFD1; Zinc
finger, C2H2-type; Peptidase, archaeal and bacterial
C-terminal; TRAF-like chr05_pseudomolecule_IMGAG_V2
30957587-30962603 E EGN_Mt071002 20080227
Length = 571
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 103/177 (58%), Gaps = 19/177 (10%)
Query: 32 SGDKIIMPPSALDRLASL-HIDY-PMLFEL-----------RNDDAERV--SHCGVLEFI 76
SGDKI +PPS L+ +D PM F+L ++ D E++ +H GVLEF
Sbjct: 90 SGDKIKLPPSCFTDLSDHGALDKGPMYFQLSLTHKEGSSSTQDTDKEKMGTTHSGVLEFT 149
Query: 77 AEEGMIYMPYWMMENML----LQEGDIVRVKNVTLPKGKYVKLQPHTKDFLDISNPKAIL 132
A+EG + +P + N+ + E ++ V+ V LPKG Y KLQP F D+ N KAIL
Sbjct: 150 ADEGSVGLPPHVWNNLFSEGCIMESPLIEVRYVWLPKGTYAKLQPERGGFSDLPNHKAIL 209
Query: 133 ETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPANAISIIETDCEVDFAPPLDYKE 189
ET+LR + L+ GD V Y ++ + ++E KP++++S++ETD EVD P+D+ E
Sbjct: 210 ETSLRQHATLSQGDIFTVNYGKLEHKLRVLELKPSSSVSVLETDIEVDIVDPIDFSE 266