Miyakogusa Predicted Gene
- chr4.CM0004.310.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.CM0004.310.nd + phase: 0
(347 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC144766_8.4 Zinc finger, CCCH-type chr04_pseudomolecule_IM... 416 e-117
IMGA|AC130963_23.4 Zinc finger, CCCH-type chr06_pseudomolecule_I... 341 3e-94
IMGA|AC155885_16.5 Zinc finger, CCCH-type chr07_pseudomolecule_I... 196 1e-50
IMGA|AC122162_29.4 Zinc finger, CCCH-type chr03_pseudomolecule_I... 186 1e-47
IMGA|AC151527_5.4 Zinc finger, CCCH-type chr04_pseudomolecule_IM... 183 8e-47
IMGA|AC135162_15.4 Zinc finger, CCCH-type chr05_pseudomolecule_I... 180 8e-46
IMGA|AC135466_15.5 Zinc finger, CCCH-type chr01_pseudomolecule_I... 177 6e-45
IMGA|AC174288_26.4 Zinc finger, CCCH-type chr01_pseudomolecule_I... 173 1e-43
IMGA|CT573029_22.4 Zinc finger, CCCH-type chr03_pseudomolecule_I... 163 9e-41
>IMGA|AC144766_8.4 Zinc finger, CCCH-type
chr04_pseudomolecule_IMGAG_V2 36395801-36394211 F
EGN_Mt071002 20080227
Length = 381
Score = 416 bits (1069), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/360 (62%), Positives = 249/360 (69%), Gaps = 38/360 (10%)
Query: 1 MML-----RANPTVHVPPWPMVNDPTTEIFSPLTATNADYDHSPFYLQEAL---EQYAPS 52
MML R NPTVHVPPWP +N+PT EIFSPLT+ + D+S FY+QEAL + Y
Sbjct: 1 MMLGEPPHRTNPTVHVPPWPTLNNPTAEIFSPLTSND---DYSQFYMQEALSAFQHYVNE 57
Query: 53 DADSD------PGRDSADVYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDP 106
+ DSD P +S D YS D FRMFEFK+R CARGRSHDWTECP++HPGEKARRRDP
Sbjct: 58 NNDSDSDSEIFPTHESVDSYSNDHFRMFEFKIRRCARGRSHDWTECPFSHPGEKARRRDP 117
Query: 107 RKYHYSGASCADFHKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAH 166
RKY+YSG SC DF KGSC KGD+CEFAHGVFECWLHP+RYRTQPCKDGTSCRR VCFFAH
Sbjct: 118 RKYNYSGTSCPDFRKGSCKKGDSCEFAHGVFECWLHPSRYRTQPCKDGTSCRRPVCFFAH 177
Query: 167 TPEQLRVLPQHSPR-----------PRSVAFEFQXXXXXXXXXXXXXXXXXXXXXXETAT 215
T EQLR Q SPR P +AFE +
Sbjct: 178 TTEQLRAPTQQSPRSVPSVDSYDGSPLRLAFE------SSCVKTLQFMSSPGSVSPPVES 231
Query: 216 PPMSPVAQSLCSS--SVGVSEMVASLCNLQLGRVKSLPSSWNMQMGSPRFGSPRGPVIRP 273
PPMSP+ +SL S S V+EMVASL NLQLG +KSLPSSWN+QMGSPRFGSPRGPVIRP
Sbjct: 232 PPMSPMTRSLGRSVGSSSVNEMVASLRNLQLGTMKSLPSSWNVQMGSPRFGSPRGPVIRP 291
Query: 274 GFCSLPSTPTQVPPGRGSVNYFDLWDQRCXXXXXXXXXXXSGRGIRAKMFEKLSKENSLD 333
GFCSLPSTPTQV P RG VN+FDLWDQ C SGR IR KMFEKLSKENS +
Sbjct: 292 GFCSLPSTPTQV-PSRGRVNHFDLWDQSC-EEEPVMERVESGRDIRVKMFEKLSKENSFN 349
>IMGA|AC130963_23.4 Zinc finger, CCCH-type
chr06_pseudomolecule_IMGAG_V2 18212463-18210963 F
EGN_Mt071002 20080227
Length = 377
Score = 341 bits (874), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 200/384 (52%), Positives = 226/384 (58%), Gaps = 59/384 (15%)
Query: 1 MMLRANPTVHVPPWPMVNDPTTEIFSPLTA---------------------TNADYDHSP 39
MMLRANPTVHVPPWP +DPT EI S + DY
Sbjct: 1 MMLRANPTVHVPPWPNHDDPTAEILSSCFGYDNNNIAGDFTGAGDYTAGDFSTGDYSSGD 60
Query: 40 FYLQEAL---EQYAPSDADSDPGRDS---------ADVYSFDQFRMFEFKVRNCARGRSH 87
+YL+EAL ++Y PS+ +D +S D YS D FRM+EFK+R CARGRSH
Sbjct: 61 YYLREALAALQRYLPSNEFNDSDLESPATAAADSTVDAYSCDHFRMYEFKIRRCARGRSH 120
Query: 88 DWTECPYAHPGEKARRRDPRKYHYSGASCADFHKGSCMKGDACEFAHGVFECWLHPARYR 147
DWTECPYAHPGEKARRRDPRK+HYSG +C DF KG+C KGDACE AHGVFECWLHPARYR
Sbjct: 121 DWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEHAHGVFECWLHPARYR 180
Query: 148 TQPCKDGTSCRRRVCFFAHTPEQLRVLPQHSPRPRSVAFEFQXXXXXXXXXXXXXXXXXX 207
TQPCKDGTSCRRRVCFFAHTPEQLR+ Q Q
Sbjct: 181 TQPCKDGTSCRRRVCFFAHTPEQLRLNVQ------------QSPSSSRSVNSPDSYDGSP 228
Query: 208 XXXXETATPPMSPVAQSLCSSSVGVSEMVASLCNLQLGRVKSLPSSWNMQMGSPRFGSPR 267
T T S SEMVASL NLQLGR+K++P + N+ +GSP FGS
Sbjct: 229 LRQMVTIT-----TPPESPPMSPMASEMVASLRNLQLGRMKTMPINRNVTIGSPVFGSGS 283
Query: 268 ---GPVIRPGFCSLPSTPTQVPPGRGSVNYFDLWDQRCXXXXXXXXXXXSGRGIRAKMFE 324
G +R GF SLP+TPT+ PG G V FDLWDQ C SGR IRAKMFE
Sbjct: 284 PVFGSPLRSGFLSLPNTPTK-KPGLGRVGGFDLWDQSC-EEEPIMERVESGRDIRAKMFE 341
Query: 325 KLSKENSLD----SSGSGQEDGAP 344
KLSKENSL+ +SG G E G P
Sbjct: 342 KLSKENSLENENGNSGLGLESGQP 365
>IMGA|AC155885_16.5 Zinc finger, CCCH-type
chr07_pseudomolecule_IMGAG_V2 22236361-22232743 E
EGN_Mt071002 20080227
Length = 734
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/206 (49%), Positives = 125/206 (60%), Gaps = 16/206 (7%)
Query: 65 VYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGASCADFHKGSC 124
+YS D+FRM+ FKVR C+R SHDWTECP+ HPGE ARRRDPRKYHYS C DF KG+C
Sbjct: 259 IYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGAC 318
Query: 125 MKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQHS----PR 180
+GD CE+AHGVFECWLHPA+YRT+ CKDGT+C RRVCFFAHTPE+LR L + P
Sbjct: 319 RRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTPEELRPLYVSTGSAVPS 378
Query: 181 PR---SVAFEFQXXXXXXXXXXXXXXXXXXXXXXETATPPMSPVAQSLCSSSVG-----V 232
PR S A +F TPPMSP + +SV +
Sbjct: 379 PRSSTSSAMDF----AAAMSMLPGSPSSMSVMSPSPFTPPMSPSGNGISHNSVAWPQPNI 434
Query: 233 SEMVASLCNLQLGRVKSLPSSWNMQM 258
+ NLQ R++S ++ ++ M
Sbjct: 435 PALHLPGSNLQSSRLRSSLNARDIHM 460
>IMGA|AC122162_29.4 Zinc finger, CCCH-type
chr03_pseudomolecule_IMGAG_V2 2887430-2883022 E
EGN_Mt071002 20080227
Length = 773
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 96/125 (76%), Gaps = 4/125 (3%)
Query: 65 VYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGASCADFHKGSC 124
+Y+ D+FRM+ FKVR C+R SHDWTECP+ HPGE ARRRDPRK+HYS C DF KG+C
Sbjct: 301 MYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGAC 360
Query: 125 MKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQHS----PR 180
+ D CE+AHGVFECWLHPA+YRT+ CKDG C RRVCFFAH+PE+LR L + P
Sbjct: 361 RRSDMCEYAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAHSPEELRPLYVSTGSAVPS 420
Query: 181 PRSVA 185
PRS A
Sbjct: 421 PRSAA 425
>IMGA|AC151527_5.4 Zinc finger, CCCH-type
chr04_pseudomolecule_IMGAG_V2 22448845-22449915 E
EGN_Mt071002 20080227
Length = 317
Score = 183 bits (465), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 76/110 (69%), Positives = 94/110 (85%)
Query: 64 DVYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGASCADFHKGS 123
D +S D FRM+EFK+R C R RSHDWT+CP+AHPGEKARRRDP +Y YSG C D+ +G+
Sbjct: 54 DPFSSDHFRMYEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPLRYQYSGEVCPDYRRGN 113
Query: 124 CMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRV 173
C +G+ACEF+HGVFECWLHP+RYRT+ CKDG +C+R++CFFAHTP QLRV
Sbjct: 114 CDRGEACEFSHGVFECWLHPSRYRTEACKDGKNCKRKICFFAHTPRQLRV 163
>IMGA|AC135162_15.4 Zinc finger, CCCH-type
chr05_pseudomolecule_IMGAG_V2 24052334-24050214 E
EGN_Mt071002 20080227
Length = 704
Score = 180 bits (456), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 78/123 (63%), Positives = 95/123 (77%), Gaps = 4/123 (3%)
Query: 65 VYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGASCADFHKGSC 124
+YS D+FRM+ FKV+ C+R SHDWTECP+ HPGE ARRRDPRKYHYS C +F KGSC
Sbjct: 225 IYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSC 284
Query: 125 MKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQHS----PR 180
KGD+C++AHG+FECWLHPA+Y+T+ CKD + C RRVCFFAH E+LR L + P
Sbjct: 285 SKGDSCDYAHGIFECWLHPAQYKTRLCKDESLCMRRVCFFAHKVEELRPLYASTGSAIPS 344
Query: 181 PRS 183
PRS
Sbjct: 345 PRS 347
>IMGA|AC135466_15.5 Zinc finger, CCCH-type
chr01_pseudomolecule_IMGAG_V2 17991268-17986726 E
EGN_Mt071002 20080227
Length = 653
Score = 177 bits (449), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 76/110 (69%), Positives = 88/110 (80%)
Query: 65 VYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGASCADFHKGSC 124
+YS D+FRMF FKV+ C+R SHDWTECP+ HPGE ARRRD RK HY+ C +F KGSC
Sbjct: 224 IYSTDEFRMFTFKVKPCSRAYSHDWTECPFVHPGENARRRDLRKCHYTCVPCPEFRKGSC 283
Query: 125 MKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVL 174
KGDA E+AHG+FECWLHPA+YRT+ CKD T C RRVCFFAH PE+LR L
Sbjct: 284 NKGDASEYAHGIFECWLHPAQYRTRLCKDETRCTRRVCFFAHKPEELRPL 333
>IMGA|AC174288_26.4 Zinc finger, CCCH-type
chr01_pseudomolecule_IMGAG_V2 18038413-18034738 E
EGN_Mt071002 20080227
Length = 291
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 76/110 (69%), Positives = 88/110 (80%)
Query: 65 VYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGASCADFHKGSC 124
+YS D+FRMF FKV+ C+R SHDWTECP+ HPGE ARRRD RK HY+ C +F KGSC
Sbjct: 182 IYSTDEFRMFTFKVKPCSRAYSHDWTECPFVHPGENARRRDLRKCHYTCVPCPEFRKGSC 241
Query: 125 MKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVL 174
KGDA E+AHG+FECWLHPA+YRT+ CKD T C RRVCFFAH PE+LR L
Sbjct: 242 NKGDASEYAHGIFECWLHPAQYRTRLCKDETRCTRRVCFFAHKPEELRPL 291
>IMGA|CT573029_22.4 Zinc finger, CCCH-type
chr03_pseudomolecule_IMGAG_V2 17579100-17576195 E
EGN_Mt071002 20080227
Length = 517
Score = 163 bits (413), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 102/163 (62%), Gaps = 11/163 (6%)
Query: 23 EIFSPLTATNADYDHSPFYLQEAL-----EQYAPSDADSDPGRDSA------DVYSFDQF 71
EI L AD D +++ L ++ DS D++ V+ D+F
Sbjct: 105 EIVKLLLDAGADVDFLDEVVRQKLSVANSKELVAEKKDSGYAIDTSLPDINNGVFVTDEF 164
Query: 72 RMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGASCADFHKGSCMKGDACE 131
RM+ FKV+ C+RG +HDWTECP+ HPGE ARRRDPRKY YS C +F KG+C K D+CE
Sbjct: 165 RMYSFKVKTCSRGYTHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKKDSCE 224
Query: 132 FAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVL 174
++HG+FE LHP++YRT+ CKD C R+VCFFAH E+LR L
Sbjct: 225 YSHGIFESLLHPSQYRTRLCKDEIRCTRKVCFFAHKHEELRPL 267