Miyakogusa Predicted Gene
- chr4.CM0003.50.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.CM0003.50.nd + phase: 2 /pseudo/partial
(478 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC152423_8.4 RabGAP/TBC chr08_pseudomolecule_IMGAG_V2 26593... 723 0.0
IMGA|AC202319_4.4 RabGAP/TBC chr04_pseudomolecule_IMGAG_V2 22250... 123 2e-28
IMGA|AC146555_23.5 RabGAP/TBC chr02_pseudomolecule_IMGAG_V2 1958... 122 4e-28
IMGA|AC149805_17.4 RabGAP/TBC chr01_pseudomolecule_IMGAG_V2 1609... 112 2e-25
IMGA|AC166093_18.4 RabGAP/TBC chr03_pseudomolecule_IMGAG_V2 2307... 86 5e-17
IMGA|AC130798_2.4 RabGAP/TBC chr04_pseudomolecule_IMGAG_V2 29763... 80 2e-15
IMGA|AC146308_5.5 RabGAP/TBC chr02_pseudomolecule_IMGAG_V2 23110... 74 1e-13
IMGA|AC137825_46.4 RabGAP/TBC chr04_pseudomolecule_IMGAG_V2 1795... 73 2e-13
IMGA|AC152425_24.4 RabGAP/TBC chr08_pseudomolecule_IMGAG_V2 2614... 69 4e-12
IMGA|CU302337_16.4 RabGAP/TBC chr05_pseudomolecule_IMGAG_V2 3630... 61 9e-10
IMGA|AC202574_34.3 RabGAP/TBC chr08_pseudomolecule_IMGAG_V2 2403... 53 3e-07
>IMGA|AC152423_8.4 RabGAP/TBC chr08_pseudomolecule_IMGAG_V2
26593613-26583681 F EGN_Mt071002 20080227
Length = 666
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/471 (76%), Positives = 388/471 (82%), Gaps = 10/471 (2%)
Query: 1 SAEDANVFLVNDFQNTLQRTLSSLELPRAVSLACGPSNTPXXXXXXXXXXXXGDSGVYNG 60
SAEDANVFLVNDFQ+TLQ+TLSSLELPRAV LA GPS+ DSGV NG
Sbjct: 162 SAEDANVFLVNDFQSTLQKTLSSLELPRAVPLARGPSDMSADESTLNENQERNDSGVNNG 221
Query: 61 SASVPQFHGRPRHKVQDPARDLSIQVLEKFSLVTKFARETTSQLFRENHSNGFSVHERRT 120
S SVPQFH RPRHKV DP RDLSIQVLEKFSLVTKFARETTSQLFREN +NGF +ERRT
Sbjct: 222 SVSVPQFHRRPRHKVNDPTRDLSIQVLEKFSLVTKFARETTSQLFRENQTNGFRANERRT 281
Query: 121 HIQSNLDPPK---------KSSNVAENISDESPAVLDSQEFDKLSLVWGKPRQPPLGSEE 171
I++NLDPPK KSS VA +SDE+ A DS+EFD LSLVWGKPRQ PLGS+E
Sbjct: 282 RIETNLDPPKSSQTNLDPPKSSTVAGKVSDENSAFSDSKEFDNLSLVWGKPRQSPLGSKE 341
Query: 172 LITFLDSEGRVTDSEAFRKRIFYGGLDHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKS 231
ITF+DSEGRV DSEA RKRIFYGGLDH+LR EVWGLLLGYYPY+STYAERE+LK+VKKS
Sbjct: 342 WITFVDSEGRVIDSEALRKRIFYGGLDHELRNEVWGLLLGYYPYDSTYAEREFLKSVKKS 401
Query: 232 EYETIKNQWQSISSAQARRFTKFRERKGLIEKDVVRTDRSLNFYEGDDNPNVNVLRDILL 291
EYETIKNQWQSISSAQA+RFTKFRERKGLIEKDVVRTDRSL FYEGDDNPNVNVLRDILL
Sbjct: 402 EYETIKNQWQSISSAQAKRFTKFRERKGLIEKDVVRTDRSLTFYEGDDNPNVNVLRDILL 461
Query: 292 TYSFYNFDLGYCQGMSDLLSPILFVMGDESEAFWCFVALMERLGPNFNRDQNGMHSQLFA 351
TYSFYNFDLGYCQGMSDLLSPILFVM DESEAFWCFV+LMERLGPNFNRDQNGMHSQLFA
Sbjct: 462 TYSFYNFDLGYCQGMSDLLSPILFVMEDESEAFWCFVSLMERLGPNFNRDQNGMHSQLFA 521
Query: 352 LSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEILLAHYPSEHL 411
LSKLVELLDSPLHNYFKQRDCLNYFFCFRW+LIQFKREFEYE TMRLWE+L HYPSEHL
Sbjct: 522 LSKLVELLDSPLHNYFKQRDCLNYFFCFRWILIQFKREFEYEKTMRLWEVLWTHYPSEHL 581
Query: 412 SPFFVVWKGXTNRKQIIGEERT-SPPLKFIKTXVAHCLVQPSRCRAYHMSV 461
+ V R +IIGEE LKFI H + + A +S+
Sbjct: 582 HLYVCVAVLKRCRGKIIGEEMDFDSLLKFINELSGHIDLDATLRDAEALSI 632
>IMGA|AC202319_4.4 RabGAP/TBC chr04_pseudomolecule_IMGAG_V2
22250413-22246094 E EGN_Mt071002 20080227
Length = 436
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 95/146 (65%), Gaps = 4/146 (2%)
Query: 261 IEKDVVRTDRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMGDE 320
I DV+RTDR+L FYE +N ++ L DIL Y+ + D+GY QGMSDL SP++ ++ DE
Sbjct: 181 IGLDVIRTDRTLVFYEKKEN--LSKLWDILAVYARIDNDVGYGQGMSDLCSPMIILLDDE 238
Query: 321 SEAFWCFVALMERLGPNFNRDQN--GMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFC 378
+++FWCF LM RL NF N G+ +QL L+ + +++D LH + + +Y F
Sbjct: 239 ADSFWCFERLMRRLRGNFRCTNNSVGVETQLNNLASITQVIDPKLHQHIEHIGGGDYLFA 298
Query: 379 FRWVLIQFKREFEYEDTMRLWEILLA 404
FR +++ F+REF + D++ LWE++ A
Sbjct: 299 FRMLMVLFRREFSFCDSLYLWEMMWA 324
>IMGA|AC146555_23.5 RabGAP/TBC chr02_pseudomolecule_IMGAG_V2
19583375-19589053 E EGN_Mt071002 20080227
Length = 443
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 95/146 (65%), Gaps = 4/146 (2%)
Query: 261 IEKDVVRTDRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMGDE 320
I DVVRTDR+L FYE +N ++ L DIL Y++ + ++GY QGMSDL SP++ ++ DE
Sbjct: 185 IGLDVVRTDRTLVFYEKQEN--LSKLWDILAVYAWIDKEVGYGQGMSDLCSPMIILLDDE 242
Query: 321 SEAFWCFVALMERLGPNFNRDQN--GMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFC 378
++AFWCF LM RL NF G+ +QL L+ + +++D LH + + +Y F
Sbjct: 243 ADAFWCFERLMRRLRGNFRCTGRTLGVEAQLSNLASITQVIDPKLHKHIEHIGGGDYVFA 302
Query: 379 FRWVLIQFKREFEYEDTMRLWEILLA 404
FR +++ F+REF + D++ LWE++ A
Sbjct: 303 FRMLMVLFRREFSFCDSLYLWEMMWA 328
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 190 KRIFYGGLDHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKSEYETIKNQ 239
+RI+ GG+ +R EVW LLG Y +ST+ ER+ ++ ++ +Y T K +
Sbjct: 58 RRIYRGGVHPSIRGEVWEFLLGCYDPKSTFDERDQIRERRRIQYATWKKE 107
>IMGA|AC149805_17.4 RabGAP/TBC chr01_pseudomolecule_IMGAG_V2
1609426-1605509 E EGN_Mt071002 20080227
Length = 591
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 77/116 (66%)
Query: 289 ILLTYSFYNFDLGYCQGMSDLLSPILFVMGDESEAFWCFVALMERLGPNFNRDQNGMHSQ 348
IL Y+ Y+ ++GYCQGMSDLLSPI+ ++ ++ EAFWCFV M++ NF D+ G+ Q
Sbjct: 390 ILEAYALYDSEIGYCQGMSDLLSPIVSIISEDHEAFWCFVGFMKKARQNFRLDEVGIRRQ 449
Query: 349 LFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
L ++K+++ D L + ++ + FF +R V++ F+RE +E T+ LWE++ A
Sbjct: 450 LELVAKIIKYKDGHLFKHLEKLQAEDCFFVYRMVVVLFRRELTFEQTICLWEVMWA 505
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 157 LVWGKPRQPPLGSEELITFLDSEGRVTDS-EAFRKRIFYGGLDHKLRIEVWGLLLGYYPY 215
+ + + R+ PL ++ + +GR+ D F KR+ GG+ ++R EVW LLG Y +
Sbjct: 58 IFYSRKRKHPLSPQQWKSLFTEDGRLRDGGTKFLKRVRNGGVHPRIRAEVWPFLLGVYDF 117
Query: 216 ESTYAEREYLKTVKKSEYETIKNQ 239
ST ER+ +KT + +YE ++ Q
Sbjct: 118 NSTKDERDAVKTQNRKQYEELRRQ 141
>IMGA|AC166093_18.4 RabGAP/TBC chr03_pseudomolecule_IMGAG_V2
23079875-23085303 E EGN_Mt071002 20080227
Length = 432
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 126/285 (44%), Gaps = 63/285 (22%)
Query: 181 RVTDSEAFRKRIFYGGLDHK-LRIEVWGLLLGYYPYESTYAEREYLKTVKKSEYETIKNQ 239
+V D RK G D LR +W LLLGY P + + E K K+S+Y+ K
Sbjct: 91 KVIDMRELRKIASQGIPDSPGLRSTIWKLLLGYLPPDRSLWSSELAK--KRSQYKRFKQD 148
Query: 240 WQSISSAQARR---------------------------------------FTKFRERKGL 260
S RR + +F + +
Sbjct: 149 ILINPSEITRRMFNSASYDADDVKCETRGMLSRSQITHGEHPLSLGKTSIWNQFFQDTDI 208
Query: 261 IE---KDVVRTDRSLNFYEGDDN---PNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPIL 314
IE +DV RT ++F+ GD N L++IL+ ++ N + Y QGM+++L+P+
Sbjct: 209 IEQIDRDVKRTHPDMHFFCGDSQLAKSNQEALKNILIIFAKLNPGIRYVQGMNEVLAPLF 268
Query: 315 FVMGD----------ESEAFWCFVALMERLGPNFNRDQN----GMHSQLFALSKLVELLD 360
+V + E++ F+CFV L+ NF + + G+ S + LS+L++ D
Sbjct: 269 YVFKNDPDEENAAFSEADTFFCFVELLSGFRDNFCQQLDNSIVGIRSTITRLSQLLKEHD 328
Query: 361 SPLHNYFKQRDCLN-YFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
L + + +N F+ FRW+ + +EF++ D++R+W+ L++
Sbjct: 329 EELWRHLEVTTKVNPQFYAFRWITLLLTQEFDFADSLRIWDTLVS 373
>IMGA|AC130798_2.4 RabGAP/TBC chr04_pseudomolecule_IMGAG_V2
29763475-29759239 E EGN_Mt071002 20080227
Length = 443
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 63/285 (22%)
Query: 181 RVTDSEAFRKRIFYGGLDHK-LRIEVWGLLLGYYPYESTYAEREYLKTVKKSEYETIKNQ 239
+V D R+ G D +R +W LLLGY P + E K K+S+Y+ K +
Sbjct: 102 KVMDLRELRRISCQGVPDSAGIRSTLWKLLLGYLPPDRALWSSELAK--KRSQYKQFKEE 159
Query: 240 WQSISSAQARRF----------TKFRERKGL----------------------------- 260
S RR R+R L
Sbjct: 160 ILMNPSEITRRMYNSTIGDADDAAKRDRALLSRSEIPHDEHPLSLGKTSVWNQFFQDTEI 219
Query: 261 ---IEKDVVRTDRSLNFYEGDDN---PNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPIL 314
I++DV RT ++F+ GD N L++IL+ ++ N + Y QGM++LL+P+
Sbjct: 220 IDQIDRDVKRTHPDMHFFSGDSKFAKSNQEALKNILIIFAKLNPGVKYVQGMNELLAPLF 279
Query: 315 FVMGDE----------SEAFWCFVALMERLGPNFNRDQN----GMHSQLFALSKLVELLD 360
+V ++ ++AF+CFV L+ L NF + + G+ S + LS+L+ D
Sbjct: 280 YVFKNDPDEENAAFAEADAFFCFVELLSGLRDNFVQQLDNSVVGIRSTITKLSQLLRKHD 339
Query: 361 SPLHNYFKQRDCLN-YFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
L + + +N F+ FRW+ + +EF + D++ +W+ LL
Sbjct: 340 EELWRHLEITSKINPQFYAFRWITLLLTQEFNFADSLHIWDTLLG 384
>IMGA|AC146308_5.5 RabGAP/TBC chr02_pseudomolecule_IMGAG_V2
23110693-23105029 E EGN_Mt071002 20080227
Length = 448
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 35/241 (14%)
Query: 190 KRIFYGGLDHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKSEYETIKNQWQSISSAQAR 249
+ + + G+ +R VW LLLGY P S RE + K+ EY +Q+ I +
Sbjct: 145 RELAWSGVPDYMRPTVWRLLLGYAPTNSD--RREGVLRRKRLEYLDCVSQYYDIPDTERS 202
Query: 250 --RFTKFRERKGLIEKDVVRTDRSLNFYEGDDNPNVN-VLRDILLTYSFYNFDLGYCQGM 306
+ R+ I D RT + F++ P V L IL ++ + GY QG+
Sbjct: 203 DDEISMLRQ----IAVDCPRTVPDVAFFQ---QPQVQKSLERILYAWAIRHPASGYVQGI 255
Query: 307 SDLLSPILFV--------------MGD---------ESEAFWCFVALMERLGPNFNRDQN 343
+DL++P V M D E++ +WC L++ + ++ Q
Sbjct: 256 NDLVTPFFVVFLSEYLEGSINNWTMSDLSSDKISNVEADCYWCLSKLLDGMQDHYTFAQP 315
Query: 344 GMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEILL 403
G+ +F L +LV +D P+ ++ + + F FRW RE + RLW+ L
Sbjct: 316 GIQRLVFKLKELVRRIDDPVSSHMENQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYL 375
Query: 404 A 404
A
Sbjct: 376 A 376
>IMGA|AC137825_46.4 RabGAP/TBC chr04_pseudomolecule_IMGAG_V2
17952770-17947618 E EGN_Mt071002 20080227
Length = 455
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 29/238 (12%)
Query: 190 KRIFYGGLDHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKSEYETIKNQWQSISSAQAR 249
+ + + G+ +R +VW LLLGY P S +E + K+ EY +Q+ I ++
Sbjct: 152 RELAWSGVPDYMRPKVWRLLLGYEPPNSD--RKEGVLGRKRGEYLDCISQYYDIPDSERS 209
Query: 250 RFTKFRERKGLIEKDVVRTDRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDL 309
R+ I D RT + F++ L IL ++ + GY QG++DL
Sbjct: 210 DDEVNMLRQ--IAVDCPRTVPDVTFFQQ--QQVQKSLERILYAWAIRHPASGYVQGINDL 265
Query: 310 LSPILFV--------------MGD---------ESEAFWCFVALMERLGPNFNRDQNGMH 346
++P L V M D E++ +WC L++ + ++ Q G+
Sbjct: 266 VTPFLVVFISEHLEGGIDDWSMSDLSSDKISNVEADCYWCLSKLLDGMQDHYTFAQPGIQ 325
Query: 347 SQLFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
+F L +LV +D P+ + + + F FRW RE ++ RLW+ LA
Sbjct: 326 RLVFKLKELVRRIDEPISQHIEDQGLEFLQFAFRWFNCLLIREIPFDLITRLWDTYLA 383
>IMGA|AC152425_24.4 RabGAP/TBC chr08_pseudomolecule_IMGAG_V2
26143019-26147973 E EGN_Mt071002 20080227
Length = 478
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 91/175 (52%), Gaps = 18/175 (10%)
Query: 249 RRFTKFRERKGLIEKDVVRTDRSLNFYEGDDN---PNVNVLRDILLTYSFYNFDLGYCQG 305
R++ + E I++D+ RT + F+ + + N +++ILL ++ N + Y QG
Sbjct: 239 RQYFQHTEIAEQIDRDLQRTHPDMPFFSAETSFSRKNREAMKNILLLFAKLNPAICYVQG 298
Query: 306 MSDLLSPILFVMGD----------ESEAFWCFVALM----ERLGPNFNRDQNGMHSQLFA 351
M+++L+PI +V E+++F CFV ++ + + +G+ + L
Sbjct: 299 MNEVLAPIYYVFSADNDNQNAANAEADSFSCFVRILGDSVDHFCQQLDNSSSGILATLSR 358
Query: 352 LSKLVELLDSPLHNYFK-QRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEILLAH 405
LS L+++ D L ++ + F+ FRW+ + +EF++E +R+W+ LL++
Sbjct: 359 LSDLLKVNDEQLWHHLEFTTKVKPQFYAFRWITLLLTQEFKFESILRIWDTLLSN 413
>IMGA|CU302337_16.4 RabGAP/TBC chr05_pseudomolecule_IMGAG_V2
36302619-36298978 E EGN_Mt071002 20080227
Length = 395
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 286 LRDILLTYSFYNFDLGYCQGMSDLLSPILFVMGDESEAFWCFVALMER--LGPNFNRDQN 343
LR +L+ YSF + D+GYCQG++ + + +L VM E +AFW L+E + + + +
Sbjct: 182 LRRVLVAYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVSDCYTNNLS 241
Query: 344 GMHSQLFALSKLVELLDSPLHNYFKQRDCLNY---FFCFRWVLIQFKREFEYEDTMRLWE 400
G H + +LL D L + W L F + E T+R+W+
Sbjct: 242 GCHVEQRVFK---DLLTKKCPRIATHLDSLEFDVSLVTTEWFLCLFSKSLPSETTLRVWD 298
Query: 401 IL 402
++
Sbjct: 299 VI 300
>IMGA|AC202574_34.3 RabGAP/TBC chr08_pseudomolecule_IMGAG_V2
24031405-24039573 E EGN_Mt071002 20080227
Length = 839
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 36/241 (14%)
Query: 192 IFYGGLDHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKSEYETIKNQWQS--ISSAQAR 249
+ GG+ LR E+W +G ++ E+ Y + + IK+ Q+ + +
Sbjct: 241 LVRGGVPMALRGELWQAFVGV---KARRVEKYYQDLLASNGDSGIKSNHQNGQLDDNDGK 297
Query: 250 RFTKF----RERKGLIEKDVVRTDRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQG 305
+F + KG IEKD+ RT + D N LR +L Y+ +N +GYCQ
Sbjct: 298 TNAEFIHVPEKWKGQIEKDLPRT---FPGHPALDEDGRNALRRLLTAYARHNPSVGYCQA 354
Query: 306 MSDLLSPILFVMGDESEAFWCF----VALMERLGPNFNR---------DQ--NGMHSQLF 350
M+ +L +M +E+ AFW +A+M+ P F D +G +S+
Sbjct: 355 MNFFAGLLLLLMPEEN-AFWFLHMTSIAVMKEWHPTFAAFILTLMGILDDYFDGYYSEDM 413
Query: 351 ALSKLVELLDSPL--HNYFKQRDCLNY------FFCFRWVLIQFKREFEYEDTMRLWEIL 402
S++ +L+ L + K + L+Y + W L F +E +R+W++L
Sbjct: 414 IESQVDQLVFEELVRERFPKLANHLDYLGVQVAWVTGPWFLSIFVNMLPWESVLRVWDVL 473
Query: 403 L 403
L
Sbjct: 474 L 474