Miyakogusa Predicted Gene

chr4.CM0003.160.nc

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr4.CM0003.160.nc + phase: 0 
         (835 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC153121_8.4 Immunoglobulin/major histocompatibility comple...  1266   0.0  

>IMGA|AC153121_8.4 Immunoglobulin/major histocompatibility complex;
           Tetratricopeptide-like helical
           chr08_pseudomolecule_IMGAG_V2 26740156-26746879 E
           EGN_Mt071002 20080227
          Length = 857

 Score = 1266 bits (3275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 630/838 (75%), Positives = 689/838 (82%), Gaps = 25/838 (2%)

Query: 22  ATDADDGIFTVTVALAKDAALHFQSGKFAECAEVLHQLLQKKQDDPKVLHNIAIAEFFRD 81
           + + DDG+  +TVALAKDAALH+QSGKFAEC +V+  LL  K  DPKVLHN AIAEFFRD
Sbjct: 21  SAEVDDGVLALTVALAKDAALHYQSGKFAECVDVMQHLLLNKPTDPKVLHNTAIAEFFRD 80

Query: 82  GCSDPKKLLEVIKGIKRTNDEHTQTSGEQGESLNNAGSKDVSGSKGSNPSALQFSGANST 141
           GCSDPKKLLEVI  IKR  DE + T  +QGE +NN G+K   GSKGSN SA QFSG NST
Sbjct: 81  GCSDPKKLLEVIYSIKRKYDELSLTYVDQGELVNNVGNKVALGSKGSNASAPQFSGVNST 140

Query: 142 TTIHKDEFDSSVAMLNTAIIWFHLHDYAKTLSVLEPLFQNIEPVDE-------------- 187
            T+H DE DSSVA LN AIIWFHLHDYAKT+SVLEPLFQ I+P+ E              
Sbjct: 141 DTMHPDELDSSVATLNIAIIWFHLHDYAKTVSVLEPLFQKIDPIKESTALHICLLLLDAS 200

Query: 188 ----------DVLTYLEKAFGVSSVSQGDSGNTAQQQSANLITKSAPVXXXXXXXXXXXX 237
                     DVLTYLE+AFGV S +Q D+GNT QQQSANL TKS PV            
Sbjct: 201 LACHDASKSADVLTYLERAFGVGSANQVDNGNTTQQQSANLTTKSVPVTISESAADPSSS 260

Query: 238 XXXXXXNASENHLSRAESEDTLDYEAMIVDMGGQSLARAMGPSSNDISRASVDRFSTVDL 297
                 NASEN+LSR  SED LDYEAMI+DMG Q+L R   P SN +SR  VDRFST+DL
Sbjct: 261 DLGSSANASENNLSRTFSEDGLDYEAMILDMGSQNLTRPTVPPSNYLSRTLVDRFSTLDL 320

Query: 298 KLKLQLYKVQFLLLTRNLKLAKREVKLAMNIARGRDSPMALLLKSELEYARGNHRKAIKL 357
           KLKLQL KVQFL+LTRNLK+AKREVKLAMNIARGRDS MAL+LKS+LEYARGNHRKAIKL
Sbjct: 321 KLKLQLCKVQFLILTRNLKIAKREVKLAMNIARGRDSSMALILKSQLEYARGNHRKAIKL 380

Query: 358 LMASSNRTDTVFSSIFNNNLGCIYYQLGKYQTSSLFFSKALTNCSSLRKDQPLKLATFSQ 417
           LMASSNRTDT FSSIFNNNLGCIYYQLGKYQTSS FFSKALTNCSSLRK+Q  KLATFSQ
Sbjct: 381 LMASSNRTDTEFSSIFNNNLGCIYYQLGKYQTSSFFFSKALTNCSSLRKEQQKKLATFSQ 440

Query: 418 DNSLLIMYNCGVQYLACGKPVLAARCFQKASLVFYKQPLLWLRLSECCLMALEKGLIKSN 477
           D SLLI+YNCGVQ+LACGKP+LAARCFQKASLVFYKQPLLWLRLSECCLMALEKGLIKS 
Sbjct: 441 DKSLLIIYNCGVQHLACGKPILAARCFQKASLVFYKQPLLWLRLSECCLMALEKGLIKSC 500

Query: 478 RVPSENLEVGVCVVGMGKWRQLVVQDQIPGKGNVDSSEGNDCFSSENGRQKLSMSLARQC 537
           RVPSE +EVGVCVVG+ KWRQLVV+DQIPG G+++SS+G+DC   E+GR KLSMSLARQC
Sbjct: 501 RVPSEKMEVGVCVVGLEKWRQLVVEDQIPGNGHMESSKGDDCVPGEDGRLKLSMSLARQC 560

Query: 538 LLNALHLLDSYSTNCLKSGLPSNSSVEEIDPNEVXXXXXXXXXXXHGVDSKAFSVAVGLG 597
           LLNALHLLDSYSTN LKSGLPSNSSVE+ D +E+           HG DSKAFSVAV +G
Sbjct: 561 LLNALHLLDSYSTNRLKSGLPSNSSVED-DTSEMLPSKNLSRKNSHGADSKAFSVAVAVG 619

Query: 598 QVNSNGDVKEQKGGTSQELIQNSLSYYEDVRRRENQLIKQAVLANLAFVELELDNPVKAL 657
           QVNSNGD KEQKGG SQEL QNSLSYYEDV RR+NQL+KQAVLANLA+VELELDNPVKAL
Sbjct: 620 QVNSNGDTKEQKGGASQELFQNSLSYYEDVCRRDNQLVKQAVLANLAYVELELDNPVKAL 679

Query: 658 SVAKRLLELPECSRIYIFLGRVYAAEALCLLNRPKEAAELLSIYLSGGNDVDLPFSQEDC 717
           + AK L ELPECSRIYIFLG VYAAEALCLLNRPKEAA+ LS YLSGGN V+LPFSQ+DC
Sbjct: 680 AAAKSLFELPECSRIYIFLGHVYAAEALCLLNRPKEAADYLSYYLSGGNSVELPFSQDDC 739

Query: 718 EKWQAERTAEFEEVNGGSTATNNSSFEDTRRIVFLKPEEARATIYANFAALSAMQGEFEK 777
           EK Q ERT EFE+ NGGSTA  NSS +D + IVFLKPEEARA+IYANFA +SAMQGE EK
Sbjct: 740 EKLQVERTVEFEDGNGGSTAAKNSSLQDPQSIVFLKPEEARASIYANFAVMSAMQGELEK 799

Query: 778 ANVLVTQALSILPNSPEAILTAVYVDLLVGKPQEALAKLKSCSRIRFLPSGVALNKSS 835
           AN+LVTQALSILPNSPEA LTAVYVDLL+GKPQEALAKLKSCSRIRFLPSGV+LNKSS
Sbjct: 800 ANILVTQALSILPNSPEATLTAVYVDLLLGKPQEALAKLKSCSRIRFLPSGVSLNKSS 857