Miyakogusa Predicted Gene

chr3.LjT34H24.100.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.LjT34H24.100.nd - phase: 1 /partial
         (322 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC161398_3.4 Mov34-1 chr02_pseudomolecule_IMGAG_V2 24802978...   470   e-133

>IMGA|AC161398_3.4 Mov34-1 chr02_pseudomolecule_IMGAG_V2
           24802978-24798664 E EGN_Mt071002 20080227
          Length = 363

 Score =  470 bits (1210), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/336 (72%), Positives = 260/336 (77%), Gaps = 16/336 (4%)

Query: 1   VRTQGMYQLLDSGFIGLIFSCYSEDANKVGRIQVIAFQSSDGKQNHMSRPIPLSPVNRXX 60
           VRTQ MYQLLDSGFIGLIFSCY+EDANK+G+IQVIAFQSSDGKQN MSRPIPLSPVN+  
Sbjct: 30  VRTQAMYQLLDSGFIGLIFSCYNEDANKIGKIQVIAFQSSDGKQNSMSRPIPLSPVNKSS 89

Query: 61  XXXXXXXXXXXXXXXXXXGYFKAESPDQDTXXXXXXXXXXXXXXXXXLGNFFANADASYL 120
                             GYFK +SP+QDT                 LGNFFANADA+YL
Sbjct: 90  IIHIDSSPSSSENLTTRSGYFKGDSPEQDTGDSRSAGASKGGGRSSELGNFFANADANYL 149

Query: 121 GGEKGGGNYLLNNSDSKEIDIDPMDMSESMQEAMHRSNLDMSGAEYVRREIPLYVLPSLS 180
           G  K G NY LNNSD   +D DPMDMSESMQEAMHRSNLDMSGAEYVR+EIPL+VLPSLS
Sbjct: 150 GSVKDGENYHLNNSDIIAVD-DPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPSLS 208

Query: 181 LINLDSPLASYMDLQHVIFEEERTAYNQAISQNMRDEKVHPLTFIHHTSTYQASLCKLIE 240
            INLDSPL+SY DLQHV+FEEERTAYNQAI QN RD KVHPLTFIHHTSTYQASLCKLIE
Sbjct: 209 FINLDSPLSSYTDLQHVLFEEERTAYNQAILQNTRDGKVHPLTFIHHTSTYQASLCKLIE 268

Query: 241 YCLSPAITALQDRLRENEVRLAIMSEEAKSLEAEA--YRGSEASLSSPRRVASPVHQVAS 298
           YCLSPAI ALQDRLRENE+RLA++SEEAKSLEAEA   RGSEASL SPR+VASP  QVAS
Sbjct: 269 YCLSPAINALQDRLRENEIRLAVLSEEAKSLEAEASTSRGSEASLGSPRQVASP-RQVAS 327

Query: 299 PVHRGSLSPASRN------------VASPGSRSRRG 322
           P+HRGS SP  RN            VASPGSRSR+G
Sbjct: 328 PIHRGSSSPRQRNSQSSSESLGSKSVASPGSRSRKG 363