Miyakogusa Predicted Gene

chr3.CM1570.200.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM1570.200.nc - phase: 0 
         (744 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC139744_8.4 PAP/25A core; PAP/25A-associated chr02_pseudom...   142   4e-34
IMGA|AC174347_24.5 hypothetical protein chr08_pseudomolecule_IMG...    53   5e-07

>IMGA|AC139744_8.4 PAP/25A core; PAP/25A-associated
           chr02_pseudomolecule_IMGAG_V2 27302498-27299355 H
           EGN_Mt071002 20080227
          Length = 721

 Score =  142 bits (359), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 146/294 (49%), Gaps = 26/294 (8%)

Query: 459 WPTSKLYLYGSCANSFGVSKSDIDVCLAIKEAEDKSKI-----IMKLADILQSDNLQNVQ 513
           +P   L+L GS  + FG + SD+D+CL ++ +E    I     + ++   L+  +     
Sbjct: 417 YPKYGLFLVGSTISGFGSNNSDMDMCLLVRHSEMDQLIESLGHLERVLKCLRQCSFIKNA 476

Query: 514 ALTRARVPIVKLMDPATGISCDICVNNILAVVNTKLLRDYGLIDARLRQLAFIIKHWAKS 573
            L +A+VPI+K  D   G+  D+  NN + + NT +L  Y  +D R+R L  I+K WA S
Sbjct: 477 DLIQAKVPILKFKDAEHGLEVDLNCNNAVGIRNTHMLFCYAQMDWRVRPLVLIVKLWAAS 536

Query: 574 RGVNETYHGTLSSYAYVLMCIHFLQL-RRPAILPCLQEMESTYSVTVDDTYCSYFDQVDR 632
           +G+N+  + T+SSY+ VLM I+FLQ    P++LPCL ++  +      D +  + D  + 
Sbjct: 537 QGINDAKNMTISSYSLVLMVINFLQCGVNPSVLPCLHKLHPSKFQPHTDLH--FIDLHEE 594

Query: 633 LCNFGRNNKETIARLVWGFFYYWAYCHDYANTVISVRTGSILSKREKDWTRRIGNDRH-- 690
           L      N +++  L   F  Y+A   DY    +SVRTGS LS  E    R   ND H  
Sbjct: 595 LQPIKSENNQSLGELFAAFLEYYAQ-FDYTKNAVSVRTGSCLSIEECRHARSFKNDPHQW 653

Query: 691 -LICIE--------------DPFETSHDLGRVVDKRSIKVLREEFERAADIMQN 729
             +CIE              +PF+ ++    V D    + ++  F  + +I+ +
Sbjct: 654 KYLCIEGVTYTYFPPFQLDTEPFDLTNTAHSVYDPEVFEKIKSIFRSSFEILND 707


>IMGA|AC174347_24.5 hypothetical protein
           chr08_pseudomolecule_IMGAG_V2 242415-240933 E
           EGN_Mt071002 20080227
          Length = 149

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 38/45 (84%), Gaps = 3/45 (6%)

Query: 133 GAALSDDLRRLGFPIEGN-DKSTFVQQQELKLKFGSLPSVSYASS 176
           G +L++ LRRLGFPIE + + ++FVQ  ELKL+FGSLP+VSYA++
Sbjct: 74  GVSLAEYLRRLGFPIESSSNNNSFVQ--ELKLQFGSLPTVSYATT 116