Miyakogusa Predicted Gene

chr3.CM0792.150.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0792.150.nd - phase: 0 
         (868 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC202498_22.3 Splicing factor PWI chr04_pseudomolecule_IMGA...   339   3e-93
IMGA|AC202498_16.3 Serine/arginine repetitive matrix protein 1. ...   161   1e-39

>IMGA|AC202498_22.3 Splicing factor PWI
           chr04_pseudomolecule_IMGAG_V2 17065983-17059995 E
           EGN_Mt071002 20080227
          Length = 891

 Score =  339 bits (869), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 220/454 (48%), Positives = 265/454 (58%), Gaps = 22/454 (4%)

Query: 431 LQYKSPVLGKKXXXXXXXXXX-XXDGWXXXXXXXXXXXXXXXXXXXXXXXXXVDSSMTRV 489
           LQ++SPV GKK             D W                         + SSM RV
Sbjct: 444 LQHRSPVSGKKRSASASPKRSPSQDEWSSQSPVRVSPSPVRRRTSPRHQRSPLQSSMGRV 503

Query: 490 RMQKSLSPETHQ--SPLRSVQRDKNGRASRNKSQDSMSTPEKSPIRSVAT-RGRSRTSSE 546
           R+QK LSPE +Q  SPLRSVQRDKNG+AS  KSQDSMSTP+KSPIRS++  + RS+TSS+
Sbjct: 504 RVQKILSPEVYQPSSPLRSVQRDKNGKASGYKSQDSMSTPDKSPIRSISPPQARSKTSSK 563

Query: 547 DRSPHESPPRQRKEKVTNERSSSP----PKKARTQRPSYDIPETREGAEETYNSRESRDP 602
           +RSPHE   RQ ++K+TN+ S SP    PKK    +P++DIPET EGAEE Y SRE +DP
Sbjct: 564 NRSPHEISLRQPRDKLTNKGSLSPRLSPPKKPTNHKPTHDIPETSEGAEEAYYSRERKDP 623

Query: 603 KSNSSQKKPKYSPVSKQKGSPAKFRHGDEFHPERRADR-------YDNKDLSNKGQEIKC 655
           KSNSS+KK ++SPVSK+ GS AKF   DEF+PER A         YDN + + KGQ+ K 
Sbjct: 624 KSNSSEKKSRHSPVSKRIGSSAKFHDEDEFYPERAASHLASDTKHYDNNERNKKGQDNKM 683

Query: 656 DNSSRKGDDPPAQQKSPMNKEIFSSEKRHESYPI-IKKSDDKDQSHSVHAKSSEQLHKSE 714
                 G + P QQKSPMNKE FS EK  ++Y    KK+DDKDQ +S +AKSS+Q HKSE
Sbjct: 684 ------GGESPGQQKSPMNKEFFSGEKLRDTYAAETKKTDDKDQINSKYAKSSDQHHKSE 737

Query: 715 AAPDFVAKVDLVNQSASYDSVSEESDKHRREGKDRRRKHKRSEKKIVXXXXXXXXXXXXX 774
              D V KVD VNQSASYDSVSEESDKHRR+GKDRR+  +   K +              
Sbjct: 738 GTQDLVGKVDHVNQSASYDSVSEESDKHRRDGKDRRKHKRSERKVVSSDENDSYDSELED 797

Query: 775 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDYISDDEEAERMDDH 834
                                                         YISD+EEAER D H
Sbjct: 798 RKEAKRRKKEEKKKLRKEEKHRKREERRRKREERHAEKLKMKSKPGYISDNEEAERRDGH 857

Query: 835 PSNNEETQVDPKKLEIELRNKALESLKAKRGLNN 868
            S++EE   DPKKLEIELRNKALESLKAK+ +NN
Sbjct: 858 QSDDEEEPYDPKKLEIELRNKALESLKAKKSMNN 891



 Score =  338 bits (867), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 161/208 (77%), Positives = 170/208 (81%), Gaps = 1/208 (0%)

Query: 1   MSGGFFRGTSADQDTRFSNKQAKLMKSQKFAPELEHLVDMTKVNMEVMKPWITRRVTELL 60
           MSGGFFRGTSADQDTRFSNKQAKL+KSQKFAPELEHLVDMTKVNM+VM+PWITR+VTELL
Sbjct: 1   MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMTKVNMDVMRPWITRKVTELL 60

Query: 61  GFEDEVLINFIHGLLDAKEVNGKEIQIQITGFMEKNTVKFMKELWTLLLSAQKNASGVPQ 120
           GFEDEVLINFIHGLL+AK+VNGKEIQIQITGFMEKNT KFMKELWTLLLSAQKNASGVPQ
Sbjct: 61  GFEDEVLINFIHGLLEAKKVNGKEIQIQITGFMEKNTGKFMKELWTLLLSAQKNASGVPQ 120

Query: 121 QFLDAXXXXXXXXXXXXXRIASEIQXXXXXXXXXXXXXXXXXLDGGLDAKDNNTASDPTL 180
           QFLDA             RI SEIQ                 LDG LDAKDN+ ASDPTL
Sbjct: 121 QFLDAKEEELLKKKAESDRITSEIQRKKDKESKDIMEERLKKLDGRLDAKDNDAASDPTL 180

Query: 181 KHRDSGHYVQDGKEADKRNGVRARNRVS 208
           K RDSGHY+QDGK+ D RNGVRARNR S
Sbjct: 181 KSRDSGHYIQDGKQTD-RNGVRARNRGS 207


>IMGA|AC202498_16.3 Serine/arginine repetitive matrix protein 1.  
          chr04_pseudomolecule_IMGAG_V2 17029668-17028263 H
          EGN_Mt071002 20080227
          Length = 83

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 78/78 (100%)

Query: 1  MSGGFFRGTSADQDTRFSNKQAKLMKSQKFAPELEHLVDMTKVNMEVMKPWITRRVTELL 60
          MSGGFFRGTSADQDTRFSNKQAKL+KSQKFAPELEHLVDMTKVNM+VM+PWITR+VTELL
Sbjct: 1  MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMTKVNMDVMRPWITRKVTELL 60

Query: 61 GFEDEVLINFIHGLLDAK 78
          GFEDEVLINFIHGLL+AK
Sbjct: 61 GFEDEVLINFIHGLLEAK 78