Miyakogusa Predicted Gene

chr3.CM0590.120.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0590.120.nc + phase: 0 
         (530 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC185525_27.5 Peptidase aspartic, active site; RNA polymera...   850   0.0  

>IMGA|AC185525_27.5 Peptidase aspartic, active site; RNA polymerase
           subunit, RPB5/RPB6-like chr08_pseudomolecule_IMGAG_V2
           1995412-1985428 H EGN_Mt071002 20080227
          Length = 529

 Score =  850 bits (2195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/532 (78%), Positives = 455/532 (85%), Gaps = 7/532 (1%)

Query: 1   MLQGRLSFFGGGDSRLVDNNSSKGEPLVPTLKLETDKQVYRPGDPVVVTIQISNPSNGYS 60
           ML+GRLSFFGGGDS L+D NSSK E +VPTLKLETDKQVYRPGDPV++TIQISNPSNGYS
Sbjct: 1   MLKGRLSFFGGGDSGLLDKNSSKNEEIVPTLKLETDKQVYRPGDPVIITIQISNPSNGYS 60

Query: 61  FLMERLSFEIKGIEKLDTQWFATQKPLPGSKQRRGEHVFLDCSCPILVANQIVNAGTSKS 120
           FLMERLSFEI+GIEKLDTQWFATQKPLPGS+QRRGEHVF+D S PILVANQI+NAGTSKS
Sbjct: 61  FLMERLSFEIRGIEKLDTQWFATQKPLPGSRQRRGEHVFVDSSTPILVANQIINAGTSKS 120

Query: 121 YVVRTLLPSIIPPSYKGSNIRYLYYVKSAVTGGWLILENGQSHAETSNDVTDLDVRIPLQ 180
           YVVRT+LPSIIPPSYKGSNIRYLYYVKSA+TGGWLILENGQS  E +NDVTDL+VRIPLQ
Sbjct: 121 YVVRTMLPSIIPPSYKGSNIRYLYYVKSAITGGWLILENGQSRTEPTNDVTDLEVRIPLQ 180

Query: 181 VWINQKSSGFPTDEDIVPLTTVQPDIFWKEMDGDADWVRANDFYDGIEEGYXXXXXXXXX 240
           +W+NQKSSGFP D+DIVPLTTVQ DIFWKEMDGDADWVRAND YDG+E+GY         
Sbjct: 181 IWVNQKSSGFPLDDDIVPLTTVQLDIFWKEMDGDADWVRANDIYDGVEDGYDSSRDDISS 240

Query: 241 XXXYNPSKENLHXXXXXXXXXXXXXXXXXXXXXXXXEIHRTSLSSNMALPRLSVA--VSD 298
              YNP KEN+                         E HRTSLSSN+ALPRLSVA  +SD
Sbjct: 241 VSSYNPMKENM----VRGFGSSLSLRSSSARSLNRLEGHRTSLSSNIALPRLSVAEVLSD 296

Query: 299 PGADVLSTQKSFGIVSPSDQQQFRKPFSADDDAGVSSSPEAG-AESLSSEGFIRGKSYNI 357
            GAD LSTQKSF +VSP++QQ+F K FSA+DDAGVSSSPEAG  ESLSSEGFIRG+SYNI
Sbjct: 297 TGADALSTQKSFTMVSPTEQQKFGKQFSAEDDAGVSSSPEAGPVESLSSEGFIRGRSYNI 356

Query: 358 RLDDQVLLKFSPKNSDSTHYFSDVIGGTLTFFHEEGARRCLEISVTLETSETINRRFVHP 417
           RLDDQVLLKFSPKNSDST+YFSD+IGGTLTFFHE+G RRCLEISVTLETSETINRRFVHP
Sbjct: 357 RLDDQVLLKFSPKNSDSTYYFSDMIGGTLTFFHEQGGRRCLEISVTLETSETINRRFVHP 416

Query: 418 SRRNSPTITKVQSDHHEVVADLVQTSFLFSVPMDGPMSFSTPHVSVQWVLRFEFFTTPKH 477
           SRRNSPTITKVQSDHHEVVADL QTSFLFSVP+DGPM+FSTPHVSVQWVLRFEF+TTPK 
Sbjct: 417 SRRNSPTITKVQSDHHEVVADLAQTSFLFSVPVDGPMTFSTPHVSVQWVLRFEFYTTPKF 476

Query: 478 VDWSKYEHPLLIEGRERTEWVLPITVHXXXXXXXXXXXXXEKLFSLDPLWVQ 529
           VDW+KYEHPLLIEGRE+TEWVLPITVH             EKLFSLDP+WV 
Sbjct: 477 VDWTKYEHPLLIEGREKTEWVLPITVHAPPPRTPTSGSRNEKLFSLDPMWVH 528