Miyakogusa Predicted Gene

chr3.CM0279.130.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0279.130.nd + phase: 0 /pseudo/partial
         (931 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC148996_15.5 Zinc finger, C3HC-like chr08_pseudomolecule_I...   197   1e-50
IMGA|AC152552_23.4 Zinc finger, C3HC-like chr07_pseudomolecule_I...   197   1e-50

>IMGA|AC148996_15.5 Zinc finger, C3HC-like
           chr08_pseudomolecule_IMGAG_V2 24808522-24802958 E
           EGN_Mt071002 20080227
          Length = 674

 Score =  197 bits (502), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 197/372 (52%), Gaps = 43/372 (11%)

Query: 68  CRPWERCDLLRRLSTFKLAGKI--PKVAGSLACAKRGWVSVDVTKIECELCGAQLDFAM- 124
           CRPW+R D +RRL+TFK       PK   ++ CA+RGW++VDV  I CE CGA+L F+  
Sbjct: 72  CRPWDRADFMRRLATFKSISWFAKPKKVSAVNCARRGWINVDVDTIACEECGARLLFSTP 131

Query: 125 LSASSVEADTSSEELSKQLDRGHKIKCPWRGNSCPESLVQFPPTSPSALIGGFKDRCDGL 184
            S +  + + ++   S +LD GHK+ CPW  N+C E+L +FPPTSP  L+  F++RC  L
Sbjct: 132 ASWNHHQVEKAALVFSLKLDNGHKLLCPWIDNACSETLARFPPTSPPVLVDNFRERCSAL 191

Query: 185 LQFYSLPIVSSSAVEQMRISHNPQIDRFIAQLQVQTAGELGYKAEMG---VTGEQAPYLY 241
           L+  +LP ++SSA++ M+   +P +D F+ Q  +Q  G  G     G   V+ ++   LY
Sbjct: 192 LELSTLPRIASSALDHMQ---SPYMDDFLGQSLMQECGN-GSAENFGIEDVSSQEELKLY 247

Query: 242 SYAQKFISLCGWEPLWHSNILDCEEQSAESAKNG---YSSCPAKGSAPDS-APSRKEFST 297
             AQ+ ISLCGWE  +    +DC + S +S KN    YS      +  ++      + + 
Sbjct: 248 YQAQRLISLCGWELRYLPYAVDCRDVSDQSHKNSTIVYSPRVVSDARNNNLTVYSADNNE 307

Query: 298 SSRKDTGDNDVLGSEFNCESRSPLLDCSLCGATVRVWDFLTTPRPVHLAPCGIDTPQTSK 357
           SS+ D      +G +   +  S +LDCSLCGATV +W F T PRPV              
Sbjct: 308 SSKMDENSKHSIGEQM--DPNSAVLDCSLCGATVGLWAFCTVPRPVE------------- 352

Query: 358 KIASTR--GISAASGINELAAADGIEKERTGDRDEATTSNKGQFVSNKNLDLNLKVACGP 415
              S R  G +  +  N+L +  G+    +   D A +S       + +L LN+ +A GP
Sbjct: 353 ---SIRLVGYAEVNVDNDLESRQGVNNALS---DIANSSK------DTSLGLNMTIAGGP 400

Query: 416 SCSPKNLISTVN 427
             + +N  + ++
Sbjct: 401 PPTKQNFKAIIS 412


>IMGA|AC152552_23.4 Zinc finger, C3HC-like
           chr07_pseudomolecule_IMGAG_V2 15755090-15749526 E
           EGN_Mt071002 20080227
          Length = 674

 Score =  197 bits (502), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 197/372 (52%), Gaps = 43/372 (11%)

Query: 68  CRPWERCDLLRRLSTFKLAGKI--PKVAGSLACAKRGWVSVDVTKIECELCGAQLDFAM- 124
           CRPW+R D +RRL+TFK       PK   ++ CA+RGW++VDV  I CE CGA+L F+  
Sbjct: 72  CRPWDRADFMRRLATFKSISWFAKPKKVSAVNCARRGWINVDVDTIACEECGARLLFSTP 131

Query: 125 LSASSVEADTSSEELSKQLDRGHKIKCPWRGNSCPESLVQFPPTSPSALIGGFKDRCDGL 184
            S +  + + ++   S +LD GHK+ CPW  N+C E+L +FPPTSP  L+  F++RC  L
Sbjct: 132 ASWNHHQVEKAALVFSLKLDNGHKLLCPWIDNACSETLARFPPTSPPVLVDNFRERCSAL 191

Query: 185 LQFYSLPIVSSSAVEQMRISHNPQIDRFIAQLQVQTAGELGYKAEMG---VTGEQAPYLY 241
           L+  +LP ++SSA++ M+   +P +D F+ Q  +Q  G  G     G   V+ ++   LY
Sbjct: 192 LELSTLPRIASSALDHMQ---SPYMDDFLGQSLMQECGN-GSAENFGIEDVSSQEELKLY 247

Query: 242 SYAQKFISLCGWEPLWHSNILDCEEQSAESAKNG---YSSCPAKGSAPDS-APSRKEFST 297
             AQ+ ISLCGWE  +    +DC + S +S KN    YS      +  ++      + + 
Sbjct: 248 YQAQRLISLCGWELRYLPYAVDCRDVSDQSHKNSTIVYSPRVVSDARNNNLTVYSADNNE 307

Query: 298 SSRKDTGDNDVLGSEFNCESRSPLLDCSLCGATVRVWDFLTTPRPVHLAPCGIDTPQTSK 357
           SS+ D      +G +   +  S +LDCSLCGATV +W F T PRPV              
Sbjct: 308 SSKMDENSKHSIGEQM--DPNSAVLDCSLCGATVGLWAFCTVPRPVE------------- 352

Query: 358 KIASTR--GISAASGINELAAADGIEKERTGDRDEATTSNKGQFVSNKNLDLNLKVACGP 415
              S R  G +  +  N+L +  G+    +   D A +S       + +L LN+ +A GP
Sbjct: 353 ---SIRLVGYAEVNVDNDLESRQGVNNALS---DIANSSK------DTSLGLNMTIAGGP 400

Query: 416 SCSPKNLISTVN 427
             + +N  + ++
Sbjct: 401 PPTKQNFKAIIS 412