Miyakogusa Predicted Gene

chr3.CM0253.470.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0253.470.nd - phase: 0 
         (434 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC147202_46.4 hypothetical protein chr07_pseudomolecule_IMG...    77   2e-14
IMGA|AC202343_15.3 Tetratricopeptide-like helical  chr04_pseudom...    62   7e-10
IMGA|AC165446_60.4 Tetratricopeptide-like helical  chr04_pseudom...    62   7e-10
IMGA|AC135464_6.5 RanBP1 chr06_pseudomolecule_IMGAG_V2 7540883-7...    55   4e-08
IMGA|CU013542_32.5 RanBP1 chr03_pseudomolecule_IMGAG_V2 6885710-...    53   3e-07
IMGA|CT963130_39.5 hypothetical protein chr03_pseudomolecule_IMG...    50   3e-06

>IMGA|AC147202_46.4 hypothetical protein
          chr07_pseudomolecule_IMGAG_V2 12279006-12279419 F
          EGN_Mt071002 20080227
          Length = 52

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 43/51 (84%)

Query: 1  MGDAENALQPSKKRAAGRELTRDTPIDDEEDSPDLESGTFKRASEEVLASR 51
          MG+AEN LQ SKKRAA R+ TRDT ID+EED  DLE+GTF +ASEEVLA+R
Sbjct: 1  MGNAENVLQSSKKRAAVRKFTRDTLIDNEEDDADLEAGTFNKASEEVLATR 51


>IMGA|AC202343_15.3 Tetratricopeptide-like helical
          chr04_pseudomolecule_IMGAG_V2 4764464-4763055 H
          EGN_Mt071002 20080227
          Length = 71

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 3  DAENALQPSKKRAAGRELTRDTPIDDEEDSPDLESGTFKRASEEVLASRRIVKVRRQQTT 62
          DAEN    SKKRAA +EL+RD P+ DEED+  L +GTFKR S+++LA++R +  R ++  
Sbjct: 2  DAENTFLSSKKRAAEQELSRDIPLLDEEDACGLAAGTFKRVSDDILATKRKLAQRSERVK 61

Query: 63 SA 64
          S 
Sbjct: 62 SV 63


>IMGA|AC165446_60.4 Tetratricopeptide-like helical
          chr04_pseudomolecule_IMGAG_V2 4673514-4672108 H
          EGN_Mt071002 20080227
          Length = 71

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 44/62 (70%)

Query: 3  DAENALQPSKKRAAGRELTRDTPIDDEEDSPDLESGTFKRASEEVLASRRIVKVRRQQTT 62
          DAEN    SKKRAA +EL+RD P+ DEED+  L +GTFKR S+++LA++R +  R ++  
Sbjct: 2  DAENTFLSSKKRAAEQELSRDIPLLDEEDACGLAAGTFKRVSDDILATKRKLAQRSERVK 61

Query: 63 SA 64
          S 
Sbjct: 62 SV 63


>IMGA|AC135464_6.5 RanBP1 chr06_pseudomolecule_IMGAG_V2
           7540883-7536528 E EGN_Mt071002 20080227
          Length = 220

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 7/120 (5%)

Query: 293 LAMQEVAVETGEENEKVVFNADSVLFEF--VDGSWKERGKGELKVNVTSGSEKARILMRS 350
           + + EVAV TGEE+E+ + +  + L+ F  V   WKERG G +K      + K R++MR 
Sbjct: 29  IQLHEVAVSTGEEDEEAILDLKAKLYRFDKVGNQWKERGAGTVKFLKHKVTGKVRLVMRQ 88

Query: 351 KGNLRLIMNARLYADMKLTNMDKKGVTFACINSA---SEGKGGLSTFAVKFKDVSIVEEF 407
              L++  N  +    K+T  +  G   +C+  A   ++G+     F ++F  +    +F
Sbjct: 89  SKTLKICANHLILP--KMTVQEHAGNEKSCVWHAKDFADGELKDEFFCIRFASIENCRKF 146


>IMGA|CU013542_32.5 RanBP1 chr03_pseudomolecule_IMGAG_V2
           6885710-6885194 F EGN_Mt071002 20080227
          Length = 158

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 293 LAMQEVAVETGEENEKVVFNADSVLFEF-VDGS-WKERGKGELKVNVTSGSEKARILMRS 350
           + +QEVAV TGEE+E+ + +  S L+ F  DG+ WKERG G +K      + K R+LMR 
Sbjct: 29  VQLQEVAVTTGEEDEESILDLKSKLYRFDKDGNQWKERGAGTVKFLKHKVTGKVRLLMRQ 88

Query: 351 KGNLRLIMNARLYADMKLTNMD 372
              L +  N  +   M +   D
Sbjct: 89  SKTLNICANHLIIPTMSVQEYD 110


>IMGA|CT963130_39.5 hypothetical protein
          chr03_pseudomolecule_IMGAG_V2 7542538-7537490 H
          EGN_Mt071002 20080227
          Length = 78

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 28/35 (80%)

Query: 11 SKKRAAGRELTRDTPIDDEEDSPDLESGTFKRASE 45
          SKKR  GR+LT DT ID+EED  DLE+GTFK+A E
Sbjct: 9  SKKRVVGRKLTCDTLIDNEEDDADLEAGTFKKAPE 43