Miyakogusa Predicted Gene

chr3.CM0253.430.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0253.430.nd + phase: 1 /pseudo/partial
         (290 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CU302340_34.3 Heat shock protein Hsp70 chr05_pseudomolecule...   113   9e-26
IMGA|CT868736_32.4 Heat shock protein Hsp70 chr03_pseudomolecule...    45   5e-05

>IMGA|CU302340_34.3 Heat shock protein Hsp70
           chr05_pseudomolecule_IMGAG_V2 33742138-33746551 E
           EGN_Mt071002 20080227
          Length = 774

 Score =  113 bits (283), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 84/135 (62%), Gaps = 11/135 (8%)

Query: 37  CVARGCALQWAILSPTLKVREFQVNESFPFSISLSWKXXXXXXXXXXXXNKPSTLVFPKG 96
           CVARGCALQ A+LSP   V+E++V +S PFSI LS               + + ++FPKG
Sbjct: 368 CVARGCALQCAMLSPVFHVKEYEVQDSIPFSIGLS-------SDEGPICEETNGVLFPKG 420

Query: 97  NPIPSFKQLTFFRTGTFSIDVQY---DDVSGLTTPAKISSYTIGPFQSTKGEKAKVKVKV 153
            PIPS K LT   +    ++  Y   D+V   T+P KIS +TIGPFQ +   KA V+V++
Sbjct: 421 QPIPSSKALTLQGSDLLHLEAFYANPDEVPKGTSP-KISCFTIGPFQRSGESKAVVEVRI 479

Query: 154 RLNLHGIVYVESATL 168
            LNLHGIV +ES+TL
Sbjct: 480 DLNLHGIVSIESSTL 494


>IMGA|CT868736_32.4 Heat shock protein Hsp70
           chr03_pseudomolecule_IMGAG_V2 10151936-10150105 E
           EGN_Mt071002 20080227
          Length = 399

 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 22/25 (88%)

Query: 37  CVARGCALQWAILSPTLKVREFQVN 61
           CVARGCALQ A+LSPT +VRE+++ 
Sbjct: 368 CVARGCALQCAMLSPTYRVREYEIR 392