Miyakogusa Predicted Gene
- chr3.CM0176.40.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr3.CM0176.40.nc + phase: 0
(641 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC174280_40.4 Cyclin, N-terminal chr01_pseudomolecule_IMGAG... 183 2e-46
IMGA|CU302348_15.4 Immunoglobulin/major histocompatibility compl... 148 8e-36
IMGA|CT573507_41.5 Immunoglobulin/major histocompatibility compl... 144 9e-35
IMGA|AC171804_10.4 Cyclin, N-terminal chr07_pseudomolecule_IMGAG... 89 5e-18
IMGA|AC137838_24.4 Cyclin, N-terminal - 5prime partial chr01_pse... 54 2e-07
IMGA|AC151426_17.5 Cyclin-like chr01_pseudomolecule_IMGAG_V2 205... 44 1e-04
>IMGA|AC174280_40.4 Cyclin, N-terminal chr01_pseudomolecule_IMGAG_V2
29643494-29646224 E EGN_Mt071002 20080227
Length = 339
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 128/200 (64%), Gaps = 4/200 (2%)
Query: 34 YFSRKEIEENSPSKQDGVDLKKEAYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFL 93
+ SR +I+ NSPS++DG+D+ E +LR SYC FLQ+LG RL++PQ TI T+++ CHRFF+
Sbjct: 141 FMSRDDIDRNSPSRKDGIDVLHETHLRYSYCAFLQNLGTRLEMPQTTIGTSMVLCHRFFV 200
Query: 94 RQSHAKNDRRIIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAVQRIKQKDVYEQ 153
R+SHA +DR +IAT +FLAGK EE+P PL V+ S E++HK+D A + D +EQ
Sbjct: 201 RRSHACHDRFLIATAALFLAGKSEESPCPLNSVLRTSSELLHKQDFAFLSYWFPVDWFEQ 260
Query: 154 QKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLC 213
+E +L E+++L TL F+L V HPY PL + K +++ L +A N + C
Sbjct: 261 YRERVLEAEQLILTTLNFELGVQHPYAPLTSVLNKLGLSKTVLVNMALNLDLHKIIMLAC 320
Query: 214 LQFKPHHIAAGAIFLAAKFL 233
+ F +A G I + K L
Sbjct: 321 MIF----LAGGLICCSWKVL 336
>IMGA|CU302348_15.4 Immunoglobulin/major histocompatibility complex;
Cyclin, N-terminal; Vpu protein, cytoplasmic
chr05_pseudomolecule_IMGAG_V2 20637843-20642744 F
EGN_Mt071002 20080227
Length = 428
Score = 148 bits (373), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 129/229 (56%), Gaps = 10/229 (4%)
Query: 43 NSPSKQDGVDLKKEAYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDR 102
NSPS++DG+D E LR C +Q+ G+ L++PQ +AT + HRF+ ++S A+ +
Sbjct: 18 NSPSRKDGIDEATETSLRIYGCDLIQESGILLRLPQAVMATGQVLFHRFYCKKSFARFNV 77
Query: 103 RIIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAVQRIKQKDVYEQQ----KELI 158
+ +A C++LA K+EE PR + V+++ + + +++ V+ + D Y ++ K +
Sbjct: 78 KKVAASCVWLASKLEENPRKARQVLIIFHRMECRRENLPVEYL---DFYSKKYVNLKMEL 134
Query: 159 LLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKP 218
ER +L +GF +V HP+K + + + L Q AWN ND LRTSLC++FK
Sbjct: 135 SRTERHILKEMGFICHVEHPHKFISNYLATLETPPE-LRQEAWNLANDSLRTSLCVRFKS 193
Query: 219 HHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELY 267
+A G ++ AA+ +V LP + WW+ FD ++EV + LY
Sbjct: 194 EIVACGVVYAAARRFQVPLPENPP--WWKAFDAEKSGIDEVCRVLAHLY 240
>IMGA|CT573507_41.5 Immunoglobulin/major histocompatibility complex;
Cyclin, N-terminal chr05_pseudomolecule_IMGAG_V2
2372492-2376976 F EGN_Mt071002 20080227
Length = 438
Score = 144 bits (364), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 129/229 (56%), Gaps = 10/229 (4%)
Query: 43 NSPSKQDGVDLKKEAYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDR 102
NSPS++DG+D E LR C +Q+ G+ L++PQ +AT + HRF+ ++S A+ +
Sbjct: 18 NSPSRKDGIDEATETTLRIYGCDLIQESGILLRLPQAVMATGQVLFHRFYCKKSFARFNV 77
Query: 103 RIIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAVQRIKQKDVYEQQ----KELI 158
+ +A C++LA K+EE R + V+++ + + +++ + + D+Y ++ K +
Sbjct: 78 KKVAASCVWLASKLEENTRKARQVLIIFHRMECRRENLPIDHL---DLYSKKYVDLKTEL 134
Query: 159 LLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKP 218
ER +L +GF +V HP+K + + + L+Q AWN ND LRT+LC++FK
Sbjct: 135 SRTERHILKEMGFICHVEHPHKFISNYLATLETPPE-LSQEAWNLANDSLRTTLCVRFKS 193
Query: 219 HHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELY 267
+A G ++ AA+ +V LP + WW+ FD ++EV + LY
Sbjct: 194 EVVACGVVYAAARRFEVPLPENPP--WWKAFDAEKSGIDEVCRVLAHLY 240
>IMGA|AC171804_10.4 Cyclin, N-terminal chr07_pseudomolecule_IMGAG_V2
11003007-11012434 H EGN_Mt071002 20080227
Length = 313
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 17/209 (8%)
Query: 43 NSPSKQDGVDLKKEAYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDR 102
N K+ GV L+ ++ ++ L ++KV Q +ATA+ + R + R S + D
Sbjct: 24 NPVDKEKGVTLEDFKLIKMHMSNYILKLAQQVKVRQRVVATAVTYMRRVYTRMSMTEYDP 83
Query: 103 RIIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAVQRIKQKDVYEQQKELILLGE 162
R++A C++LA K EE+ ++ +LV Y ++++ D Y + + IL E
Sbjct: 84 RLVAPACLYLASKAEES--TVQARLLVFY----------IKKLYADDKYRYEIKDILEME 131
Query: 163 RVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIA 222
+L L + L V HPY+ L ++ + ++ Q+ W VND + L L PH IA
Sbjct: 132 MKILEALKYYLVVFHPYRSLSGFLQDAGLNDLSMTQLTWGLVNDTYKMDLMLVHPPHLIA 191
Query: 223 AGAIFLAAKFLKVKLPSDGEKVWWQEFDV 251
I++A+ L VW++E V
Sbjct: 192 LACIYIAS-----VLREKDTTVWYEELRV 215
>IMGA|AC137838_24.4 Cyclin, N-terminal - 5prime partial
chr01_pseudomolecule_IMGAG_V2 29646322-29649906 E
EGN_Mt071002 20080227
Length = 58
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/60 (58%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 208 LRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELY 267
LR+SL LQFKPH IAAGA +LAAKFL + L + K WQEF TP L++VS Q++EL+
Sbjct: 1 LRSSLWLQFKPHQIAAGAAYLAAKFLNMDLAA--YKNIWQEFQATPSVLQDVSQQLMELF 58
>IMGA|AC151426_17.5 Cyclin-like chr01_pseudomolecule_IMGAG_V2
20573033-20576237 E EGN_Mt071002 20080227
Length = 342
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 32/197 (16%)
Query: 46 SKQDGVDLKKEAYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRII 105
S+ + +++E ++ Y LQ++ P ATA+IF RF+L+ S ++ + I
Sbjct: 68 SRIKPLSIEEEQSIKVFYENKLQEVCNNFHFPHKIQATALIFFKRFYLQWSVMEHQPKNI 127
Query: 106 ATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAVQRIKQKD--VYEQQKELILLGER 163
C++ A K+EE VS E + K Q I + VY+ +K L +
Sbjct: 128 MLTCIYAACKIEENH--------VSAEELGKGISQDHQMILNNEMIVYQARKGL----KY 175
Query: 164 VVLATLGFDLNVHHPYKPL--------------VEAIKKFKVAQNALAQVAWNFVNDGLR 209
+ +L FDL V+ PY+ + + ++KFK QN A++ V+ +
Sbjct: 176 QFVLSLDFDLIVYAPYRSVEGFTDSMEELCISGEDELQKFKALQNT-ARLE---VDKMML 231
Query: 210 TSLCLQFKPHHIAAGAI 226
T L F P +A A+
Sbjct: 232 TDSPLLFPPGQLALAAL 248