Miyakogusa Predicted Gene

chr3.CM0135.380.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0135.380.nd + phase: 1 /partial
         (1111 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC146777_22.5 PWWP; Regulation of nuclear pre-mRNA protein ...   975   0.0  
IMGA|AC158374_21.5 PWWP; Regulation of nuclear pre-mRNA protein ...   200   3e-51

>IMGA|AC146777_22.5 PWWP; Regulation of nuclear pre-mRNA protein
            chr04_pseudomolecule_IMGAG_V2 32034456-32026199 E
            EGN_Mt071002 20080227
          Length = 1051

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/852 (64%), Positives = 613/852 (71%), Gaps = 33/852 (3%)

Query: 6    DNGHGVLKNGSKTRKVVTGSKKQSEAADDINKNGGSSTGKKLKEGNSTGGADRSRSGVTL 65
            DNG+ VL NGS  RK+VTGSK++ E ADD NKNGGSS G  LK G+STG AD  RSG T 
Sbjct: 227  DNGNSVLTNGSTPRKLVTGSKRRLEVADDRNKNGGSSAGTILKVGSSTGSADLFRSGATF 286

Query: 66   KDGKKRKIAPSVKSDAPETLKSGSNGNAGEKSKNLIPIKTSPKVKEDLQE----SEETDG 121
            K GKK K A +VKSD+P+TLK   NGN GEK KNLI   TS +VK +L E    ++E  G
Sbjct: 287  KIGKKGKDASAVKSDSPDTLKPDLNGNTGEKGKNLISKNTSLEVKNELHEIMSDAKEAGG 346

Query: 122  KSSSMGKKVQLLAKHNVRANESLHATKRLKRADAKDDSTLGYLPKDVKSAPPGSIAVEGK 181
            K+SSMGKK Q+  KHNV ANESLHATK+LKR DAKDDST G++PKDVKS  P S  VE K
Sbjct: 347  KNSSMGKKNQVHTKHNVGANESLHATKKLKRMDAKDDSTSGHIPKDVKSTLPCSTFVEDK 406

Query: 182  AFKKMELKRSTSNLKTEKSVPSRAQVGVVGSDDSVHEVLPETNHHSKVQQAMPDSDCIAS 241
            + K  ELKRSTSN K EKS              S  E+ P   HHS+VQ+ MPDSD IAS
Sbjct: 407  SSKMFELKRSTSNSKAEKS--------------SGRELPPTIKHHSQVQKTMPDSDRIAS 452

Query: 242  DEKKDQSALRLKGDXXXXXXXXXXXXXXCVYXXXXXXXPKTPVHGGPAKTMKSPIVSEVK 301
            DEKKD S L+LKGD               V        PKTPVHGG AK  KSP  S+VK
Sbjct: 453  DEKKDWSNLKLKGDMKNVMTKQVQKKRKAVCLYEDDDKPKTPVHGGAAKNSKSPFASDVK 512

Query: 302  KSNDAHLERSDDTQLAPRKSSEPENIRLKEPSSQLRNDSSSIKQPKKDKGDEVIPVHAPC 361
            K N+AH E+SD  +LA R S E  +  LKE SSQL + +SSIK P+K+K DEVI VH P 
Sbjct: 513  KGNNAHSEKSDTARLALRNSGEFVDAHLKESSSQLHSHTSSIKPPQKEKADEVITVHVPH 572

Query: 362  GHDKLDPKQTVSKMAKLSSASPVKSPQSLPAM-KPNLDRNKSSKPLLKGSSNATQKKVDH 420
             HDKLD KQ  SK AK+SSASPVKSPQ++PA+ K N +R+KSSK LLK SS AT KK D+
Sbjct: 573  SHDKLDSKQFPSKAAKVSSASPVKSPQAVPAITKSNAERSKSSKSLLKASSIATPKKADN 632

Query: 421  AXXXXXXXXXXXQNQVATHKKKLAXXXXXXXXXXXXLPQAVEVPPSTLGFKEPDALHVDR 480
                        QNQV+ HKKK A            LPQAV++P S + FKEPDALHVDR
Sbjct: 633  GSSKSSHNLSSSQNQVSAHKKKPASSAEVSKTTPKTLPQAVDIPVSAVDFKEPDALHVDR 692

Query: 481  LEVSMEEKSIMYAGSGTPESARTMRHLIAVAQAKRKQAHSQYLTLGIHNFQGGTPSPSSV 540
            LE  MEE+S              M++LIA AQAK K+AHSQYL+  IH+ QG TPSPS++
Sbjct: 693  LEEGMEERS-------------NMKNLIAAAQAKWKKAHSQYLSSDIHHVQGETPSPSTL 739

Query: 541  QPILSISNSFVQTDVQGVYEHTALASPPTNEHHSASRNLLDADEIEERRVGSAQRGVGGS 600
            QP LS+S++F   DVQGV+EHT   SPPTNE+HSAS+N LDADEIEERRV S QRG GGS
Sbjct: 740  QPFLSVSSNFAHADVQGVHEHTTSVSPPTNEYHSASQNQLDADEIEERRVSSVQRGPGGS 799

Query: 601  LSGGTEAAVARDAFEGMIETLSRTKESIGRATRLAIDCAKYGIANEVVEVLIRKLENETS 660
            LSGGTEA VARDAFEGMIETLSRTKESIGRATRLAIDCAKYGIANEVVE+LIRKLENETS
Sbjct: 800  LSGGTEAGVARDAFEGMIETLSRTKESIGRATRLAIDCAKYGIANEVVELLIRKLENETS 859

Query: 661  FHRKVDLFFLVDSITQCSHSHKGIAGASYIPTVQXXXXXXXXXXXXXXXXXXENRRQCLK 720
            FHRKVDLFFLVDSITQCSHS KGIAGASYIPTVQ                  ENRRQC K
Sbjct: 860  FHRKVDLFFLVDSITQCSHSQKGIAGASYIPTVQAALPRLLGAAAPPGASARENRRQCHK 919

Query: 721  VLRLWLERKIFPESVIRRYMDDIGVSNDDMTVSLSLRRPSRAERSVDDPIREMEGMLVDE 780
            VLRLWLERKI PESVIR YMD+IGVSNDD+TVS S RRPSRAERSVDDPIREMEGMLVDE
Sbjct: 920  VLRLWLERKILPESVIRHYMDEIGVSNDDITVSFSFRRPSRAERSVDDPIREMEGMLVDE 979

Query: 781  YGSNATFQLPGFLSSHAF-EDEDEDDLQINSCKDTQDASPADPTLTLGESETSTVTPNDK 839
            YGSNATFQLPGFLS HAF EDEDE+DL INSC D    SP DPT   G SET TVTPNDK
Sbjct: 980  YGSNATFQLPGFLSCHAFDEDEDEEDLPINSCTDMYGTSPVDPTPKFGGSETDTVTPNDK 1039

Query: 840  RHCILEDVDGEL 851
            RHCILEDVDGEL
Sbjct: 1040 RHCILEDVDGEL 1051


>IMGA|AC158374_21.5 PWWP; Regulation of nuclear pre-mRNA protein
            chr01_pseudomolecule_IMGAG_V2 16379458-16395544 E
            EGN_Mt071002 20080227
          Length = 1381

 Score =  200 bits (509), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 137/348 (39%), Positives = 173/348 (49%), Gaps = 38/348 (10%)

Query: 532  GGTPSPSSVQPILSISNSFVQTDVQGVYEHTALASPPTNEHHSASRNLLDADEIEERRVG 591
            GG   P    P  SI N  V T       H    SP  + H   +     +  ++E + G
Sbjct: 786  GGDCLPQGSPPNTSICN--VSTSDSSNILHNGSCSPDVHLHQKQTL----SGPVDESKYG 839

Query: 592  SA----QRGVGGSLSGGTEAAVARDAFEGMIETLSRTKESIGRATRLAIDCAKYGIANEV 647
            S      R +G S   G  A +    FE M+ TL RTKESIGRATR+AIDCAK+GIA++V
Sbjct: 840  SEATQQSRSMGKSSEAGRAALLY---FEAMLGTLKRTKESIGRATRIAIDCAKFGIADKV 896

Query: 648  VEVLIRKLENETSFHRKVDLFFLVDSITQCSHSHKGIAGASYIPTVQXXXXXXXXXXXXX 707
            +E+L   LE E+S HR+VDLFFLVDSI Q S   KG     Y   +Q             
Sbjct: 897  MEILADNLETESSLHRRVDLFFLVDSIAQFSRGLKGDVCLVYSSAIQAVLPRLLSAAVPT 956

Query: 708  XXXXXENRRQCLKVLRLWLERKIFPESVIRRYMDDIGVSNDDMTVSLSLRRPSRAERSVD 767
                 ENRRQCLK                  +   +G  N      +  RR  R ER++D
Sbjct: 957  GNAAQENRRQCLKA----------------SFKAVVGEKNPTRAHGVYSRRSLRTERALD 1000

Query: 768  DPIREMEGMLVDEYGSNATFQLPGFLSSHAFEDEDEDDLQINSCKDTQDASPADPTLTLG 827
            DPIREMEGM VDEYGSN++ QLPGF      +DED+++    S  D  +     P     
Sbjct: 1001 DPIREMEGMHVDEYGSNSSLQLPGFCMPRMLKDEDDNE---ESDSDGGNFEAVTPEHNSE 1057

Query: 828  ESETSTVTPNDKRHCILEDVDGELEMEDVSGHPKDEKPVFLNSFDEID 875
              E +++   DK   ILEDVDGELEMEDVS      + V +NSF  +D
Sbjct: 1058 VHEMTSII--DKHRHILEDVDGELEMEDVS----PSRDVEMNSFSNVD 1099